From 690db2a6b605aaf4d7419cfb326ec9c86841b3c3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Thu, 1 Feb 2018 16:32:51 -0300 Subject: [PATCH 1/3] New package: lcalc-1.23 --- srcpkgs/lcalc-devel | 1 + srcpkgs/lcalc/files/test | 14 + srcpkgs/lcalc/files/test.i686 | 2102 +++++++++++++++++ srcpkgs/lcalc/files/test.musl | 2102 +++++++++++++++++ srcpkgs/lcalc/files/test.out | 2102 +++++++++++++++++ srcpkgs/lcalc/patches/Lcommon.h.patch | 11 + .../lcalc-1.23_default_parameters_1.patch | 24 + .../lcalc-1.23_default_parameters_2.patch | 56 + .../patches/lcalc-1.23_fix-const-char.patch | 53 + .../lcalc-1.23_fix-return-non-void.patch | 20 + srcpkgs/lcalc/patches/pari-2.7.patch | 67 + srcpkgs/lcalc/patches/pari-mem.patch | 24 + srcpkgs/lcalc/patches/pari_include.patch | 30 + .../lcalc/patches/using_namespace_std.patch | 41 + srcpkgs/lcalc/template | 45 + 15 files changed, 6692 insertions(+) create mode 120000 srcpkgs/lcalc-devel create mode 100644 srcpkgs/lcalc/files/test create mode 100644 srcpkgs/lcalc/files/test.i686 create mode 100644 srcpkgs/lcalc/files/test.musl create mode 100644 srcpkgs/lcalc/files/test.out create mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch create mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch create mode 100644 srcpkgs/lcalc/patches/pari-mem.patch create mode 100644 srcpkgs/lcalc/patches/pari_include.patch create mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch create mode 100644 srcpkgs/lcalc/template diff --git a/srcpkgs/lcalc-devel b/srcpkgs/lcalc-devel new file mode 120000 index 000000000000..ec3437a2fb19 --- /dev/null +++ b/srcpkgs/lcalc-devel @@ -0,0 +1 @@ +lcalc \ No newline at end of file diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test new file mode 100644 index 000000000000..cbac6d8b324d --- /dev/null +++ b/srcpkgs/lcalc/files/test @@ -0,0 +1,14 @@ +echo "### First 1000 zeros of zeta function" +./lcalc -z 1000 +echo +echo "### Analytic rank of elliptic curve 5077a1" +./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r +echo +echo "### run example program" +LD_LIBRARY_PATH=. example_programs/example +echo +echo "### test data files: zeros of data_mass" +./lcalc -F example_data_files/data_maass -z 20 +echo +echo "### test data files: zeros of data_tau" +./lcalc -F example_data_files/data_tau -z 1000 diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686 new file mode 100644 index 000000000000..08872e4cc25f --- /dev/null +++ b/srcpkgs/lcalc/files/test.i686 @@ -0,0 +1,2102 @@ +### First 1000 zeros of zeta function + 14.13472514173 + 21.02203963877 + 25.01085758015 + 30.42487612586 + 32.93506158774 + 37.58617815883 + 40.91871901215 + 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1405.6669750592 + 1407.0851427764 + 1408.1363074962 + 1409.3206810798 + 1410.0248107258 + 1411.2570568157 + 1411.9656534618 + 1413.8431487886 + 1415.5857847955 + 1415.7815813033 + 1417.1028229338 + 1418.6969638525 + 1419.422480946 + +### Analytic rank of elliptic curve 5077a1 +analytic rank equals 3 + +### run example program +----------------------------------------------- + +Name of L_function: zeta +All coefficients are equal to 1 + +Q = 0.564189583548 +OMEGA = (1,0) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0,0) + + +number of poles (of the completed L function) = 2 +pole[1] =(1,0) residue[1] =(1,0) +pole[2] =(0,0) residue[2] =(-1,0) +----------------------------------------------- + +----------------------------------------------- + +Name of L_function: L4 +number of dirichlet coefficients = 4 +coefficients are periodic +b[1] = 1 +b[2] = 0 +b[3] = -1 +b[4] = 0 + +Q = 1.1283791671 +OMEGA = (1,0) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0.5,0) + + +number of poles (of the completed L function) = 0 +----------------------------------------------- + +----------------------------------------------- + +Name of L_function: L5 +number of dirichlet coefficients = 5 +coefficients are periodic +b[1] = (1,0) +b[2] = (0,1) +b[3] = (-0,-1) +b[4] = (-1,0) +b[5] = (0,0) + +Q = 1.26156626101 +OMEGA = (0.850650808352,0.525731112119) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0.5,0) + + +number of poles (of the completed L function) = 0 +----------------------------------------------- + +zeta(0.5,0) = (-1.46035450881,0) +L4(0.5,0) = (0.6676914571896,0) +L5(0.5,0) = (0.7637478801173,0.2169647675189) +L4(1,0) = (0.7853981633975,0) +L5(1,0) = (0.8648062659772,0.2041530661384) +0.4285714285714 +1.5 +0.1666666666667 +0.6666666666667 +0.5714285714286 +0 +0.5714285714286 +0.5714285714286 +0 +0.8888888888889 +6.123031769112e-17 +-0.7071067811865 + +### test data files: zeros of data_mass + 2.89772467827 + 5.59124531532 + 21.09037750873 + 23.15751048459 + 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example program +----------------------------------------------- + +Name of L_function: zeta +All coefficients are equal to 1 + +Q = 0.564189583548 +OMEGA = (1,0) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0,0) + + +number of poles (of the completed L function) = 2 +pole[1] =(1,0) residue[1] =(1,0) +pole[2] =(0,0) residue[2] =(-1,0) +----------------------------------------------- + +----------------------------------------------- + +Name of L_function: L4 +number of dirichlet coefficients = 4 +coefficients are periodic +b[1] = 1 +b[2] = 0 +b[3] = -1 +b[4] = 0 + +Q = 1.1283791671 +OMEGA = (1,0) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0.5,0) + + +number of poles (of the completed L function) = 0 +----------------------------------------------- + +----------------------------------------------- + +Name of L_function: L5 +number of dirichlet coefficients = 5 +coefficients are periodic +b[1] = (1,0) +b[2] = (0,1) +b[3] = (-0,-1) +b[4] = (-1,0) +b[5] = (0,0) + +Q = 1.26156626101 +OMEGA = (0.850650808352,0.525731112119) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0.5,0) + + +number of poles (of the completed L function) = 0 +----------------------------------------------- + +zeta(0.5,0) = (-1.46035450881,0) +L4(0.5,0) = (0.6676914571896,0) +L5(0.5,0) = (0.7637478801173,0.2169647675189) +L4(1,0) = (0.7853981633975,0) +L5(1,0) = (0.8648062659772,0.2041530661384) +0.4285714285714 +1.5 +0.1666666666667 +0.6666666666667 +0.5714285714286 +0 +0.5714285714286 +0.5714285714286 +0 +0.8888888888889 +6.123233995737e-17 +-0.7071067811865 + +### test data files: zeros of data_mass + 2.89772467827 + 5.59124531532 + 21.09037750873 + 23.15751048459 + 25.43930038984 + 29.18920671354 + 31.06173948455 + 32.45271823746 + 34.02727968404 + 36.93123719687 + 38.98709821794 + 40.46554901427 + 41.68511034313 + 43.05108147996 + 45.22036201604 + 47.66072427933 + 48.81796648431 + 49.79846517638 + 51.37514501231 + 52.55988761653 + +### test data files: zeros of 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1381.0739771492 + 1382.3456629785 + 1383.2975910079 + 1384.4444158478 + 1385.6637770112 + 1387.3266476635 + 1387.9214541271 + 1389.5658317984 + 1390.7054902864 + 1391.8532004433 + 1392.6440277885 + 1393.4334017408 + 1394.8841846757 + 1396.5441631237 + 1397.8346233214 + 1398.8376752014 + 1399.8394729412 + 1400.4269462974 + 1402.5643472501 + 1402.9737476409 + 1404.0062921705 + 1405.6669750592 + 1407.0851427764 + 1408.1363074962 + 1409.3206810798 + 1410.0248107258 + 1411.2570568157 + 1411.9656534618 + 1413.8431487886 + 1415.5857847955 + 1415.7815813033 + 1417.1028229338 + 1418.6969638525 + 1419.422480946 + +### Analytic rank of elliptic curve 5077a1 +analytic rank equals 3 + +### run example program +----------------------------------------------- + +Name of L_function: zeta +All coefficients are equal to 1 + +Q = 0.564189583548 +OMEGA = (1,0) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0,0) + + +number of poles (of the completed L function) = 2 +pole[1] =(1,0) residue[1] =(1,0) +pole[2] =(0,0) residue[2] =(-1,0) +----------------------------------------------- + +----------------------------------------------- + +Name of L_function: L4 +number of dirichlet coefficients = 4 +coefficients are periodic +b[1] = 1 +b[2] = 0 +b[3] = -1 +b[4] = 0 + +Q = 1.1283791671 +OMEGA = (1,0) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0.5,0) + + +number of poles (of the completed L function) = 0 +----------------------------------------------- + +----------------------------------------------- + +Name of L_function: L5 +number of dirichlet coefficients = 5 +coefficients are periodic +b[1] = (1,0) +b[2] = (0,1) +b[3] = (-0,-1) +b[4] = (-1,0) +b[5] = (0,0) + +Q = 1.26156626101 +OMEGA = (0.850650808352,0.525731112119) +a = 1 (the quasi degree) +gamma[1] =0.5 lambda[1] =(0.5,0) + + +number of poles (of the completed L function) = 0 +----------------------------------------------- + +zeta(0.5,0) = (-1.46035450881,0) +L4(0.5,0) = (0.6676914571896,0) +L5(0.5,0) = (0.7637478801173,0.2169647675189) +L4(1,0) = (0.7853981633975,0) +L5(1,0) = (0.8648062659772,0.2041530661384) +0.4285714285714 +1.5 +0.1666666666667 +0.6666666666667 +0.5714285714286 +0 +0.5714285714286 +0.5714285714286 +0 +0.8888888888889 +6.123233995737e-17 +-0.7071067811865 + +### test data files: zeros of data_mass + 2.89772467827 + 5.59124531532 + 21.09037750873 + 23.15751048459 + 25.43930038984 + 29.18920671354 + 31.06173948455 + 32.45271823746 + 34.02727968404 + 36.93123719687 + 38.98709821794 + 40.46554901427 + 41.68511034313 + 43.05108147996 + 45.22036201604 + 47.66072427933 + 48.81796648431 + 49.79846517638 + 51.37514501231 + 52.55988761653 + +### test data files: zeros of data_tau + 9.222379399921 + 13.90754986139 + 17.44277697823 + 19.65651314195 + 22.33610363721 + 25.27463654811 + 26.80439115835 + 28.83168262419 + 31.17820949836 + 32.77487538223 + 35.19699584121 + 36.74146297671 + 37.75391597562 + 40.21903437422 + 41.73049228931 + 43.59174123558 + 45.04007921378 + 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+0000 ++++ src/include/Lcommon.h 2011-03-08 21:19:11.849443238 +0000 +@@ -25,7 +25,7 @@ + #ifdef USE_MPFR + inline double lcalc_to_double(const double& x) { return x; } + #endif +-//inline double lcalc_to_double(const long double& x) { return x; } ++inline double lcalc_to_double(const long double& x) { return x; } + inline double lcalc_to_double(const int& x) { return x; } + inline double lcalc_to_double(const long long& x) { return x; } + inline double lcalc_to_double(const short& x) { return x; } diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch new file mode 100644 index 000000000000..b94fc72d18a5 --- /dev/null +++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch @@ -0,0 +1,24 @@ +diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h +--- lcalc-1.23-vanilla/include/Ldirichlet_series.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h 2014-04-21 14:37:59.027464849 +0200 +@@ -43,7 +43,7 @@ + //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + template + Complex L_function :: +-dirichlet_series(Complex s, long long N=-1) ++dirichlet_series(Complex s, long long N) + { + Complex z=0.; + long long m,n; +diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h +--- lcalc-1.23-vanilla/include/L.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23-fixed-gcc.4.9/include/L.h 2014-04-21 14:32:04.003467348 +0200 +@@ -491,7 +491,7 @@ + + //#include "Ldirichlet_series.h" //for computing Dirichlet series + Complex partial_dirichlet_series(Complex s, long long N1, long long N2); +- Complex dirichlet_series(Complex s, long long N); ++ Complex dirichlet_series(Complex s, long long N=-1LL); + + //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series + //void compute_taylor_series(int N, int K, Complex s_0, Complex *series); diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch new file mode 100644 index 000000000000..f5fd45358d0b --- /dev/null +++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch @@ -0,0 +1,56 @@ +--- lcalc-1.23/include/Lgamma.h 2012-08-08 23:21:55.000000000 +0200 ++++ lcalc-1.23/include/Lgamma.h 2014-05-18 21:15:27.786889718 +0200 +@@ -77,7 +77,7 @@ + //n=0 should just give log_GAMMA(z)... thus making log_GAMMA + //code obsolete. But leave log_GAMMA intact anyways. + template +-precise(ttype) log_GAMMA (ttype z,int n=0) ++precise(ttype) log_GAMMA (ttype z,int n) + { + int M; + precise(ttype) log_G,r,r2,y; +@@ -230,7 +230,7 @@ + //value exp_w which holds exp(-w) + //computes G(z,w), so there's an extra w^(-z) factor. + template +-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false) ++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle) + { + + Complex G; +@@ -334,7 +334,7 @@ + + + template +-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false) //computes G(z,w) via continued fraction ++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via continued fraction + { + + ttype G; +@@ -424,7 +424,7 @@ + } + + template +-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false) //computes G(z,w) via asymptotic series ++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via asymptotic series + { + + if(my_verbose>3) cout << "called asympt_GAMMA("< +-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false) //computes g(z,w) ++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle) //computes g(z,w) + { + + ttype g; +@@ -604,7 +604,7 @@ + } + + template +-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme") ++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method) + { + Complex SUM=0; + diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch new file mode 100644 index 000000000000..1640dda12bc4 --- /dev/null +++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch @@ -0,0 +1,53 @@ +diff --git a/include/cmdline.h b/include/cmdline.h +index 319920a..41967e1 100644 +--- a/include/cmdline.h ++++ b/include/cmdline.h +@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info); + int cmdline_parser_required (struct gengetopt_args_info *args_info, + const char *prog_name); + +-extern char *cmdline_parser_output_character_values[] ; /**< @brief Possible values for output-character. */ ++extern const char *cmdline_parser_output_character_values[] ; /**< @brief Possible values for output-character. */ + + + #ifdef __cplusplus +diff --git a/src/cmdline.c b/src/cmdline.c +index 6daf7da..1087693 100644 +--- a/src/cmdline.c ++++ b/src/cmdline.c +@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf + struct cmdline_parser_params *params, const char *additional_error); + + +-char *cmdline_parser_output_character_values[] = {"1", "2", 0} ; /* Possible values for output-character. */ ++const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ; /* Possible values for output-character. */ + + static char * + gengetopt_strdup (const char *s); +@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info) + * -2 if more than one value has matched + */ + static int +-check_possible_values(const char *val, char *values[]) ++check_possible_values(const char *val, const char *values[]) + { + int i, found, last; + size_t len; +@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[]) + + + static void +-write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[]) ++write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[]) + { + int found = -1; + if (arg) { +@@ -681,7 +681,7 @@ static char *package_name = 0; + static + int update_arg(void *field, char **orig_field, + unsigned int *field_given, unsigned int *prev_given, +- char *value, char *possible_values[], const char *default_value, ++ char *value, const char *possible_values[], const char *default_value, + cmdline_parser_arg_type arg_type, + int check_ambiguity, int override, + int no_free, int multiple_option, diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch new file mode 100644 index 000000000000..23850bbfbd56 --- /dev/null +++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch @@ -0,0 +1,20 @@ +diff --git a/include/Lvalue.h b/include/Lvalue.h +index eef9ffa..01974c3 100644 +--- a/include/Lvalue.h ++++ b/include/Lvalue.h +@@ -486,6 +486,15 @@ + delete [] DELTA; + return L_value*exp(z-.5*log(OMEGA)); + } ++ ++ else // return L(s) ++ { ++ z=1; ++ for(j=1;j<=a;j++) ++ z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]); ++ delete [] DELTA; ++ return L_value*exp(-log(Q)*s)/z; ++ } + } + + diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch new file mode 100644 index 000000000000..d565490d98d3 --- /dev/null +++ b/srcpkgs/lcalc/patches/pari-2.7.patch @@ -0,0 +1,67 @@ +--- src/src/Lcommandline_elliptic.cc 2010-01-31 16:16:45.000000000 +0100 ++++ src/src/Lcommandline_elliptic.cc 2011-05-10 17:08:10.000000000 +0200 +@@ -121,11 +121,11 @@ + + + F = cgetg(6, t_VEC); +- F[1] = lgeti(BIGDEFAULTPREC); +- F[2] = lgeti(BIGDEFAULTPREC); +- F[3] = lgeti(BIGDEFAULTPREC); +- F[4] = lgeti(BIGDEFAULTPREC); +- F[5] = lgeti(BIGDEFAULTPREC); ++ F[1] = (long)cgeti(BIGDEFAULTPREC); ++ F[2] = (long)cgeti(BIGDEFAULTPREC); ++ F[3] = (long)cgeti(BIGDEFAULTPREC); ++ F[4] = (long)cgeti(BIGDEFAULTPREC); ++ F[5] = (long)cgeti(BIGDEFAULTPREC); + + //gaffsg(a1,(GEN) F[1]); + //gaffsg(a2,(GEN) F[2]); +@@ -133,15 +133,15 @@ + //gaffsg(a4,(GEN) F[4]); + //gaffsg(a6,(GEN) F[5]); + +- gaffect(strtoGEN(a1), (GEN) F[1]); +- gaffect(strtoGEN(a2), (GEN) F[2]); +- gaffect(strtoGEN(a3), (GEN) F[3]); +- gaffect(strtoGEN(a4), (GEN) F[4]); +- gaffect(strtoGEN(a6), (GEN) F[5]); ++ gaffect(gp_read_str(a1), (GEN) F[1]); ++ gaffect(gp_read_str(a2), (GEN) F[2]); ++ gaffect(gp_read_str(a3), (GEN) F[3]); ++ gaffect(gp_read_str(a4), (GEN) F[4]); ++ gaffect(gp_read_str(a6), (GEN) F[5]); + +- E = initell(F,BIGDEFAULTPREC); ++ E = ellinit(F, NULL, BIGDEFAULTPREC); + +- C=globalreduction(E); ++ C=ellglobalred(E); + + x=gtodouble((GEN) C[1]); + +@@ -167,8 +167,8 @@ + + p=n; + gaffsg(p,y); +- coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p)); +- //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p)); ++ coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p)); ++ //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p)); + + if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction + { +diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc +--- src/src/Lcommandline.cc 2012-08-08 23:21:56.000000000 +0200 ++++ b/src/Lcommandline.cc 2014-01-06 14:02:19.463388366 +0100 +@@ -473,7 +473,9 @@ + + #ifdef INCLUDE_PARI + if(do_elliptic_curve){ +- allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double ++ // Reallocate PARI stack ++ paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double ++ + if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl; + initialize_new_L(a1,a2,a3,a4,a6,N_terms); + } diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch new file mode 100644 index 000000000000..1566681a909b --- /dev/null +++ b/srcpkgs/lcalc/patches/pari-mem.patch @@ -0,0 +1,24 @@ +Use a much smaller PARI stack size for starting up + +Actually 1MB is sufficient, so there is plenty of margin +with the 16MB in this patch + +See https://trac.sagemath.org/ticket/24516 + +diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc +--- lcalc-1.23/src/Lcommandline.cc 2012-08-08 23:21:56.000000000 +0200 ++++ lcalc-1.23-patched//src/Lcommandline.cc 2018-01-30 11:23:06.975418539 +0100 +@@ -412,12 +412,7 @@ + + t2=.5; //t2=.5 because of the GAMMA(s+1/2) + +- pari_init(1000000000,2); +- //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent +- //pari from giving its interrupt signal when its elliptic curve a_p +- //algorithm is called and interrupted with ctrl-c. Requires a more current +- //version of pari, so use pari_init above until I have a configure set up +- //that detects which pari, if any, is installed. ++ pari_init_opts(16000000, 2, INIT_DFTm); + + coeff = new Double[3]; + //compute the conductor which is copied to coeff[1] diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch new file mode 100644 index 000000000000..8ad1cc1cc43a --- /dev/null +++ b/srcpkgs/lcalc/patches/pari_include.patch @@ -0,0 +1,30 @@ +Notes: +Use a standard include path for pari. It means there is no need +to specify an include path when pari headers are in a standard location. + +diff --git a/include/Lcommandline.h b/include/Lcommandline.h +index 6537e98..5e63e4e 100644 +--- a/include/Lcommandline.h ++++ b/include/Lcommandline.h +@@ -39,7 +39,7 @@ + + #include "Lcommandline_globals.h" //command line global variables + #ifdef INCLUDE_PARI +-#include "pari.h" //for pari's elliptic curve functions ++#include "pari/pari.h" //for pari's elliptic curve functions + #undef init //pari has a '#define init pari_init' which + //causes trouble with the stream.h init. + //pari also causes trouble with things like abs. +diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h +index 17fa42c..7d80208 100644 +--- a/include/Lcommandline_elliptic.h ++++ b/include/Lcommandline_elliptic.h +@@ -32,7 +32,7 @@ + + + #ifdef INCLUDE_PARI +-#include "pari.h" //for pari's elliptic curve functions ++#include "pari/pari.h" //for pari's elliptic curve functions + #undef init //pari has a '#define init pari_init' which + //causes trouble with the stream.h init. + //pari also causes trouble with things like abs. diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch new file mode 100644 index 000000000000..6d733ffd7115 --- /dev/null +++ b/srcpkgs/lcalc/patches/using_namespace_std.patch @@ -0,0 +1,41 @@ +diff --git a/include/Lcommon.h b/include/Lcommon.h +index 1b3be43..bf40532 100644 +--- a/include/Lcommon.h ++++ b/include/Lcommon.h +@@ -48,7 +48,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th + + // Loop i from m to n + // Useful in tidying up most for loops +-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) ++#define loop(i,m,n) for(auto i=(m); i!=(n); i++) + + // A class for calculations involving polynomials of small degree + // Not efficient enough for huge polynomials +diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h +index 86ae4df..33c560c 100644 +--- a/include/Lcommon_ld.h ++++ b/include/Lcommon_ld.h +@@ -53,7 +53,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th + + // Loop i from m to n + // Useful in tidying up most for loops +-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) ++#define loop(i,m,n) for(auto i=(m); i!=(n); i++) + + // A class for calculations involving polynomials of small degree + // Not efficient enough for huge polynomials +diff --git a/include/Lglobals.h b/include/Lglobals.h +index 60002e4..ca2606c 100644 +--- a/include/Lglobals.h ++++ b/include/Lglobals.h +@@ -24,9 +24,9 @@ + #ifndef Lglobals_H + #define Lglobals_H + ++#include + using namespace std; + +-#include + #ifdef USE_MPFR + #include "Lgmpfrxx.h" + typedef mpfr_class Double; diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template new file mode 100644 index 000000000000..d724b524f992 --- /dev/null +++ b/srcpkgs/lcalc/template @@ -0,0 +1,45 @@ +# Template file for 'lcalc' +pkgname=lcalc +version=1.23 +revision=1 +build_wrksrc="src" +build_style="gnu-makefile" +makedepends="pari-devel" +short_desc="Michael Rubinstein's L-function calculator" +maintainer="Gonzalo Tornaría " +license="GPL-2.0-or-later" +homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/" +distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2" +checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0 +patch_args="-Np1" +nocross=yes + +pre_build() { + CC="$CXX" + LDFLAGS+=" -lpari" + make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI" +} + +pre_install() { + mkdir -p ${DESTDIR}/usr/{bin,lib,include} + make_install_args+=" INSTALL_DIR=${DESTDIR}/usr" +} + +do_check() { + echo "Testing lcalc ..." + . "${FILESDIR}/test" > test.log + case "$XBPS_TARGET_MACHINE" in + i686) OUT="${FILESDIR}/test.i686" ;; + *-musl) OUT="${FILESDIR}/test.musl" ;; + *) OUT="${FILESDIR}/test.out" ;; + esac + diff "$OUT" test.log && echo PASS +} + +lcalc-devel_package() { + short_desc+=" - development files" + pkg_install() { + vmove "usr/lib" + vmove "usr/include" + } +} From 75734708f6d670705c9b12672609ad29f6f2dffa Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Wed, 7 Apr 2021 19:09:58 -0300 Subject: [PATCH 2/3] lcalc: change patches, testing, enable cross --- srcpkgs/lcalc/files/test | 6 +- srcpkgs/lcalc/files/test.i686 | 2102 ----------------- srcpkgs/lcalc/files/test.musl | 2102 ----------------- srcpkgs/lcalc/files/test.out | 1994 +--------------- srcpkgs/lcalc/patches/Lcommon.h.patch | 11 - .../lcalc-1.23_default_parameters_1.patch | 24 - .../lcalc-1.23_default_parameters_2.patch | 56 - .../patches/lcalc-1.23_fix-const-char.patch | 53 - .../lcalc-1.23_fix-return-non-void.patch | 20 - srcpkgs/lcalc/patches/pari-2.7.patch | 67 - srcpkgs/lcalc/patches/pari-mem.patch | 24 - srcpkgs/lcalc/patches/pari_include.patch | 30 - .../lcalc/patches/using_namespace_std.patch | 41 - srcpkgs/lcalc/template | 57 +- 14 files changed, 49 insertions(+), 6538 deletions(-) delete mode 100644 srcpkgs/lcalc/files/test.i686 delete mode 100644 srcpkgs/lcalc/files/test.musl delete mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch delete mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch delete mode 100644 srcpkgs/lcalc/patches/pari-mem.patch delete mode 100644 srcpkgs/lcalc/patches/pari_include.patch delete mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test index cbac6d8b324d..d7f08e771829 100644 --- a/srcpkgs/lcalc/files/test +++ b/srcpkgs/lcalc/files/test @@ -1,5 +1,5 @@ echo "### First 1000 zeros of zeta function" -./lcalc -z 1000 +./lcalc -z 10 echo echo "### Analytic rank of elliptic curve 5077a1" ./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r @@ -8,7 +8,7 @@ echo "### run example program" LD_LIBRARY_PATH=. example_programs/example echo echo "### test data files: zeros of data_mass" -./lcalc -F example_data_files/data_maass -z 20 +./lcalc -F example_data_files/data_maass -z 10 echo echo "### test data files: zeros of data_tau" -./lcalc -F example_data_files/data_tau -z 1000 +./lcalc -F example_data_files/data_tau -z 10 diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686 deleted file mode 100644 index 08872e4cc25f..000000000000 --- a/srcpkgs/lcalc/files/test.i686 +++ /dev/null @@ -1,2102 +0,0 @@ -### First 1000 zeros of zeta function - 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1411.2570568157 - 1411.9656534618 - 1413.8431487886 - 1415.5857847955 - 1415.7815813033 - 1417.1028229338 - 1418.6969638525 - 1419.422480946 - -### Analytic rank of elliptic curve 5077a1 -analytic rank equals 3 - -### run example program ------------------------------------------------ - -Name of L_function: zeta -All coefficients are equal to 1 - -Q = 0.564189583548 -OMEGA = (1,0) -a = 1 (the quasi degree) -gamma[1] =0.5 lambda[1] =(0,0) - - -number of poles (of the completed L function) = 2 -pole[1] =(1,0) residue[1] =(1,0) -pole[2] =(0,0) residue[2] =(-1,0) ------------------------------------------------ - ------------------------------------------------ - -Name of L_function: L4 -number of dirichlet coefficients = 4 -coefficients are periodic -b[1] = 1 -b[2] = 0 -b[3] = -1 -b[4] = 0 - -Q = 1.1283791671 -OMEGA = (1,0) -a = 1 (the quasi degree) -gamma[1] =0.5 lambda[1] =(0.5,0) - - -number of poles (of the completed L function) = 0 ------------------------------------------------ - ------------------------------------------------ - -Name of L_function: L5 -number of dirichlet coefficients = 5 -coefficients are periodic -b[1] = (1,0) -b[2] = (0,1) -b[3] = (-0,-1) -b[4] = (-1,0) -b[5] = (0,0) - -Q = 1.26156626101 -OMEGA = (0.850650808352,0.525731112119) -a = 1 (the quasi degree) -gamma[1] =0.5 lambda[1] =(0.5,0) - - -number of poles (of the completed L function) = 0 ------------------------------------------------ - -zeta(0.5,0) = (-1.46035450881,0) -L4(0.5,0) = (0.6676914571896,0) -L5(0.5,0) = (0.7637478801173,0.2169647675189) -L4(1,0) = (0.7853981633975,0) -L5(1,0) = (0.8648062659772,0.2041530661384) -0.4285714285714 -1.5 -0.1666666666667 -0.6666666666667 -0.5714285714286 -0 -0.5714285714286 -0.5714285714286 -0 -0.8888888888889 -6.123031769112e-17 --0.7071067811865 - -### test data files: zeros of data_mass - 2.89772467827 - 5.59124531532 - 21.09037750873 - 23.15751048459 - 25.43930038984 - 29.18920671354 - 31.06173948455 - 32.45271823746 - 34.02727968404 - 36.93123719687 - 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1411.2570568157 - 1411.9656534618 - 1413.8431487886 - 1415.5857847955 - 1415.7815813033 - 1417.1028229338 - 1418.6969638525 - 1419.422480946 - -### Analytic rank of elliptic curve 5077a1 -analytic rank equals 3 - -### run example program ------------------------------------------------ - -Name of L_function: zeta -All coefficients are equal to 1 - -Q = 0.564189583548 -OMEGA = (1,0) -a = 1 (the quasi degree) -gamma[1] =0.5 lambda[1] =(0,0) - - -number of poles (of the completed L function) = 2 -pole[1] =(1,0) residue[1] =(1,0) -pole[2] =(0,0) residue[2] =(-1,0) ------------------------------------------------ - ------------------------------------------------ - -Name of L_function: L4 -number of dirichlet coefficients = 4 -coefficients are periodic -b[1] = 1 -b[2] = 0 -b[3] = -1 -b[4] = 0 - -Q = 1.1283791671 -OMEGA = (1,0) -a = 1 (the quasi degree) -gamma[1] =0.5 lambda[1] =(0.5,0) - - -number of poles (of the completed L function) = 0 ------------------------------------------------ - ------------------------------------------------ - -Name of L_function: L5 -number of dirichlet coefficients = 5 -coefficients are periodic -b[1] = (1,0) -b[2] = (0,1) -b[3] = (-0,-1) -b[4] = (-1,0) -b[5] = (0,0) - -Q = 1.26156626101 -OMEGA = (0.850650808352,0.525731112119) -a = 1 (the quasi degree) -gamma[1] =0.5 lambda[1] =(0.5,0) - - -number of poles (of the completed L function) = 0 ------------------------------------------------ - -zeta(0.5,0) = (-1.46035450881,0) -L4(0.5,0) = (0.6676914571896,0) -L5(0.5,0) = (0.7637478801173,0.2169647675189) -L4(1,0) = (0.7853981633975,0) -L5(1,0) = (0.8648062659772,0.2041530661384) -0.4285714285714 -1.5 -0.1666666666667 -0.6666666666667 -0.5714285714286 -0 -0.5714285714286 -0.5714285714286 -0 -0.8888888888889 -6.123233995737e-17 --0.7071067811865 - -### test data files: zeros of data_mass - 2.89772467827 - 5.59124531532 - 21.09037750873 - 23.15751048459 - 25.43930038984 - 29.18920671354 - 31.06173948455 - 32.45271823746 - 34.02727968404 - 36.93123719687 - 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1417.1028229338 - 1418.6969638525 - 1419.422480946 ### Analytic rank of elliptic curve 5077a1 analytic rank equals 3 @@ -1062,7 +72,7 @@ number of poles (of the completed L function) = 0 zeta(0.5,0) = (-1.46035450881,0) L4(0.5,0) = (0.6676914571896,0) L5(0.5,0) = (0.7637478801173,0.2169647675189) -L4(1,0) = (0.7853981633975,0) +L4(1,0) = (0.7853981633974,0) L5(1,0) = (0.8648062659772,0.2041530661384) 0.4285714285714 1.5 @@ -1088,16 +98,6 @@ L5(1,0) = (0.8648062659772,0.2041530661384) 32.45271823746 34.02727968404 36.93123719687 - 38.98709821794 - 40.46554901427 - 41.68511034313 - 43.05108147996 - 45.22036201604 - 47.66072427933 - 48.81796648431 - 49.79846517638 - 51.37514501231 - 52.55988761653 ### test data files: zeros of data_tau 9.222379399921 @@ -1110,993 +110,3 @@ L5(1,0) = (0.8648062659772,0.2041530661384) 28.83168262419 31.17820949836 32.77487538223 - 35.19699584121 - 36.74146297671 - 37.75391597562 - 40.21903437422 - 41.73049228931 - 43.59174123558 - 45.04007921378 - 46.19731875314 - 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793.6824817862 - 794.2494604355 - 794.8643478829 - 795.7108659659 - 796.3599628579 - 797.2415727207 - 797.5367495806 - 798.2405842527 - 798.4808445315 - 799.1140258006 - 800.1561392321 - 800.8559394303 - 801.3394717495 - 802.303512687 - 802.7583089762 - 803.3028993871 - 803.8165934026 - 804.8119519437 - 805.583201496 - 805.8640060142 - 806.6989178963 - 807.0969015865 - 807.842135501 - 808.5551619242 - 809.0614773183 - 809.9220540855 - 810.4394871581 - 810.954253284 diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch deleted file mode 100644 index c6b5c0aaa39e..000000000000 --- a/srcpkgs/lcalc/patches/Lcommon.h.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- src/include/Lcommon.h 2010-01-31 15:16:45.000000000 +0000 -+++ src/include/Lcommon.h 2011-03-08 21:19:11.849443238 +0000 -@@ -25,7 +25,7 @@ - #ifdef USE_MPFR - inline double lcalc_to_double(const double& x) { return x; } - #endif --//inline double lcalc_to_double(const long double& x) { return x; } -+inline double lcalc_to_double(const long double& x) { return x; } - inline double lcalc_to_double(const int& x) { return x; } - inline double lcalc_to_double(const long long& x) { return x; } - inline double lcalc_to_double(const short& x) { return x; } diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch deleted file mode 100644 index b94fc72d18a5..000000000000 --- a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch +++ /dev/null @@ -1,24 +0,0 @@ -diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h ---- lcalc-1.23-vanilla/include/Ldirichlet_series.h 2012-08-08 23:21:55.000000000 +0200 -+++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h 2014-04-21 14:37:59.027464849 +0200 -@@ -43,7 +43,7 @@ - //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX - template - Complex L_function :: --dirichlet_series(Complex s, long long N=-1) -+dirichlet_series(Complex s, long long N) - { - Complex z=0.; - long long m,n; -diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h ---- lcalc-1.23-vanilla/include/L.h 2012-08-08 23:21:55.000000000 +0200 -+++ lcalc-1.23-fixed-gcc.4.9/include/L.h 2014-04-21 14:32:04.003467348 +0200 -@@ -491,7 +491,7 @@ - - //#include "Ldirichlet_series.h" //for computing Dirichlet series - Complex partial_dirichlet_series(Complex s, long long N1, long long N2); -- Complex dirichlet_series(Complex s, long long N); -+ Complex dirichlet_series(Complex s, long long N=-1LL); - - //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series - //void compute_taylor_series(int N, int K, Complex s_0, Complex *series); diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch deleted file mode 100644 index f5fd45358d0b..000000000000 --- a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch +++ /dev/null @@ -1,56 +0,0 @@ ---- lcalc-1.23/include/Lgamma.h 2012-08-08 23:21:55.000000000 +0200 -+++ lcalc-1.23/include/Lgamma.h 2014-05-18 21:15:27.786889718 +0200 -@@ -77,7 +77,7 @@ - //n=0 should just give log_GAMMA(z)... thus making log_GAMMA - //code obsolete. But leave log_GAMMA intact anyways. - template --precise(ttype) log_GAMMA (ttype z,int n=0) -+precise(ttype) log_GAMMA (ttype z,int n) - { - int M; - precise(ttype) log_G,r,r2,y; -@@ -230,7 +230,7 @@ - //value exp_w which holds exp(-w) - //computes G(z,w), so there's an extra w^(-z) factor. - template --Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false) -+Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle) - { - - Complex G; -@@ -334,7 +334,7 @@ - - - template --ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false) //computes G(z,w) via continued fraction -+ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via continued fraction - { - - ttype G; -@@ -424,7 +424,7 @@ - } - - template --ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false) //computes G(z,w) via asymptotic series -+ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle) //computes G(z,w) via asymptotic series - { - - if(my_verbose>3) cout << "called asympt_GAMMA("< --ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false) //computes g(z,w) -+ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle) //computes g(z,w) - { - - ttype g; -@@ -604,7 +604,7 @@ - } - - template --Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme") -+Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method) - { - Complex SUM=0; - diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch deleted file mode 100644 index 1640dda12bc4..000000000000 --- a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch +++ /dev/null @@ -1,53 +0,0 @@ -diff --git a/include/cmdline.h b/include/cmdline.h -index 319920a..41967e1 100644 ---- a/include/cmdline.h -+++ b/include/cmdline.h -@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info); - int cmdline_parser_required (struct gengetopt_args_info *args_info, - const char *prog_name); - --extern char *cmdline_parser_output_character_values[] ; /**< @brief Possible values for output-character. */ -+extern const char *cmdline_parser_output_character_values[] ; /**< @brief Possible values for output-character. */ - - - #ifdef __cplusplus -diff --git a/src/cmdline.c b/src/cmdline.c -index 6daf7da..1087693 100644 ---- a/src/cmdline.c -+++ b/src/cmdline.c -@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf - struct cmdline_parser_params *params, const char *additional_error); - - --char *cmdline_parser_output_character_values[] = {"1", "2", 0} ; /* Possible values for output-character. */ -+const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ; /* Possible values for output-character. */ - - static char * - gengetopt_strdup (const char *s); -@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info) - * -2 if more than one value has matched - */ - static int --check_possible_values(const char *val, char *values[]) -+check_possible_values(const char *val, const char *values[]) - { - int i, found, last; - size_t len; -@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[]) - - - static void --write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[]) -+write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[]) - { - int found = -1; - if (arg) { -@@ -681,7 +681,7 @@ static char *package_name = 0; - static - int update_arg(void *field, char **orig_field, - unsigned int *field_given, unsigned int *prev_given, -- char *value, char *possible_values[], const char *default_value, -+ char *value, const char *possible_values[], const char *default_value, - cmdline_parser_arg_type arg_type, - int check_ambiguity, int override, - int no_free, int multiple_option, diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch deleted file mode 100644 index 23850bbfbd56..000000000000 --- a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch +++ /dev/null @@ -1,20 +0,0 @@ -diff --git a/include/Lvalue.h b/include/Lvalue.h -index eef9ffa..01974c3 100644 ---- a/include/Lvalue.h -+++ b/include/Lvalue.h -@@ -486,6 +486,15 @@ - delete [] DELTA; - return L_value*exp(z-.5*log(OMEGA)); - } -+ -+ else // return L(s) -+ { -+ z=1; -+ for(j=1;j<=a;j++) -+ z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]); -+ delete [] DELTA; -+ return L_value*exp(-log(Q)*s)/z; -+ } - } - - diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch deleted file mode 100644 index d565490d98d3..000000000000 --- a/srcpkgs/lcalc/patches/pari-2.7.patch +++ /dev/null @@ -1,67 +0,0 @@ ---- src/src/Lcommandline_elliptic.cc 2010-01-31 16:16:45.000000000 +0100 -+++ src/src/Lcommandline_elliptic.cc 2011-05-10 17:08:10.000000000 +0200 -@@ -121,11 +121,11 @@ - - - F = cgetg(6, t_VEC); -- F[1] = lgeti(BIGDEFAULTPREC); -- F[2] = lgeti(BIGDEFAULTPREC); -- F[3] = lgeti(BIGDEFAULTPREC); -- F[4] = lgeti(BIGDEFAULTPREC); -- F[5] = lgeti(BIGDEFAULTPREC); -+ F[1] = (long)cgeti(BIGDEFAULTPREC); -+ F[2] = (long)cgeti(BIGDEFAULTPREC); -+ F[3] = (long)cgeti(BIGDEFAULTPREC); -+ F[4] = (long)cgeti(BIGDEFAULTPREC); -+ F[5] = (long)cgeti(BIGDEFAULTPREC); - - //gaffsg(a1,(GEN) F[1]); - //gaffsg(a2,(GEN) F[2]); -@@ -133,15 +133,15 @@ - //gaffsg(a4,(GEN) F[4]); - //gaffsg(a6,(GEN) F[5]); - -- gaffect(strtoGEN(a1), (GEN) F[1]); -- gaffect(strtoGEN(a2), (GEN) F[2]); -- gaffect(strtoGEN(a3), (GEN) F[3]); -- gaffect(strtoGEN(a4), (GEN) F[4]); -- gaffect(strtoGEN(a6), (GEN) F[5]); -+ gaffect(gp_read_str(a1), (GEN) F[1]); -+ gaffect(gp_read_str(a2), (GEN) F[2]); -+ gaffect(gp_read_str(a3), (GEN) F[3]); -+ gaffect(gp_read_str(a4), (GEN) F[4]); -+ gaffect(gp_read_str(a6), (GEN) F[5]); - -- E = initell(F,BIGDEFAULTPREC); -+ E = ellinit(F, NULL, BIGDEFAULTPREC); - -- C=globalreduction(E); -+ C=ellglobalred(E); - - x=gtodouble((GEN) C[1]); - -@@ -167,8 +167,8 @@ - - p=n; - gaffsg(p,y); -- coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p)); -- //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p)); -+ coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p)); -+ //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p)); - - if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction - { -diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc ---- src/src/Lcommandline.cc 2012-08-08 23:21:56.000000000 +0200 -+++ b/src/Lcommandline.cc 2014-01-06 14:02:19.463388366 +0100 -@@ -473,7 +473,9 @@ - - #ifdef INCLUDE_PARI - if(do_elliptic_curve){ -- allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double -+ // Reallocate PARI stack -+ paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double -+ - if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl; - initialize_new_L(a1,a2,a3,a4,a6,N_terms); - } diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch deleted file mode 100644 index 1566681a909b..000000000000 --- a/srcpkgs/lcalc/patches/pari-mem.patch +++ /dev/null @@ -1,24 +0,0 @@ -Use a much smaller PARI stack size for starting up - -Actually 1MB is sufficient, so there is plenty of margin -with the 16MB in this patch - -See https://trac.sagemath.org/ticket/24516 - -diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc ---- lcalc-1.23/src/Lcommandline.cc 2012-08-08 23:21:56.000000000 +0200 -+++ lcalc-1.23-patched//src/Lcommandline.cc 2018-01-30 11:23:06.975418539 +0100 -@@ -412,12 +412,7 @@ - - t2=.5; //t2=.5 because of the GAMMA(s+1/2) - -- pari_init(1000000000,2); -- //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent -- //pari from giving its interrupt signal when its elliptic curve a_p -- //algorithm is called and interrupted with ctrl-c. Requires a more current -- //version of pari, so use pari_init above until I have a configure set up -- //that detects which pari, if any, is installed. -+ pari_init_opts(16000000, 2, INIT_DFTm); - - coeff = new Double[3]; - //compute the conductor which is copied to coeff[1] diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch deleted file mode 100644 index 8ad1cc1cc43a..000000000000 --- a/srcpkgs/lcalc/patches/pari_include.patch +++ /dev/null @@ -1,30 +0,0 @@ -Notes: -Use a standard include path for pari. It means there is no need -to specify an include path when pari headers are in a standard location. - -diff --git a/include/Lcommandline.h b/include/Lcommandline.h -index 6537e98..5e63e4e 100644 ---- a/include/Lcommandline.h -+++ b/include/Lcommandline.h -@@ -39,7 +39,7 @@ - - #include "Lcommandline_globals.h" //command line global variables - #ifdef INCLUDE_PARI --#include "pari.h" //for pari's elliptic curve functions -+#include "pari/pari.h" //for pari's elliptic curve functions - #undef init //pari has a '#define init pari_init' which - //causes trouble with the stream.h init. - //pari also causes trouble with things like abs. -diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h -index 17fa42c..7d80208 100644 ---- a/include/Lcommandline_elliptic.h -+++ b/include/Lcommandline_elliptic.h -@@ -32,7 +32,7 @@ - - - #ifdef INCLUDE_PARI --#include "pari.h" //for pari's elliptic curve functions -+#include "pari/pari.h" //for pari's elliptic curve functions - #undef init //pari has a '#define init pari_init' which - //causes trouble with the stream.h init. - //pari also causes trouble with things like abs. diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch deleted file mode 100644 index 6d733ffd7115..000000000000 --- a/srcpkgs/lcalc/patches/using_namespace_std.patch +++ /dev/null @@ -1,41 +0,0 @@ -diff --git a/include/Lcommon.h b/include/Lcommon.h -index 1b3be43..bf40532 100644 ---- a/include/Lcommon.h -+++ b/include/Lcommon.h -@@ -48,7 +48,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th - - // Loop i from m to n - // Useful in tidying up most for loops --#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) -+#define loop(i,m,n) for(auto i=(m); i!=(n); i++) - - // A class for calculations involving polynomials of small degree - // Not efficient enough for huge polynomials -diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h -index 86ae4df..33c560c 100644 ---- a/include/Lcommon_ld.h -+++ b/include/Lcommon_ld.h -@@ -53,7 +53,7 @@ const bool outputSeries=true; // Whether to output the coefficients or just th - - // Loop i from m to n - // Useful in tidying up most for loops --#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++) -+#define loop(i,m,n) for(auto i=(m); i!=(n); i++) - - // A class for calculations involving polynomials of small degree - // Not efficient enough for huge polynomials -diff --git a/include/Lglobals.h b/include/Lglobals.h -index 60002e4..ca2606c 100644 ---- a/include/Lglobals.h -+++ b/include/Lglobals.h -@@ -24,9 +24,9 @@ - #ifndef Lglobals_H - #define Lglobals_H - -+#include - using namespace std; - --#include - #ifdef USE_MPFR - #include "Lgmpfrxx.h" - typedef mpfr_class Double; diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template index d724b524f992..19396f11643c 100644 --- a/srcpkgs/lcalc/template +++ b/srcpkgs/lcalc/template @@ -4,20 +4,56 @@ version=1.23 revision=1 build_wrksrc="src" build_style="gnu-makefile" -makedepends="pari-devel" +makedepends="gmp-devel pari-devel" short_desc="Michael Rubinstein's L-function calculator" maintainer="Gonzalo Tornaría " license="GPL-2.0-or-later" homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/" distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2" checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0 -patch_args="-Np1" -nocross=yes + +# get patches from sagemath +_patchurl="https://git.sagemath.org/sage.git/plain/build/pkgs/lcalc/patches" +_patchtag="?h=9.3.rc2" +_patches=" + Lcommon.h.patch + Lvalue.h.patch + Makefile.patch + clang.patch + lcalc-1.23_default_parameters_1.patch + lcalc-1.23_default_parameters_2.patch + pari-2.7.patch + pari-mem.patch + pari_include.patch + time.h.patch + using_namespace_std.patch +" +checksum+=" + bd39a43b24a332e1826e667f85ca2ce2ca14749d56f60069cd886c96f55e9e3c + d8c660f68f33b6eeb4b801d4028faaaaccbfff5797efe654bb6367e0a687542d + dadf6fc6d481595cb041f8b0dd92bc2e2bc390cbb3e0dd36b7fe63b74942db26 + 342cde1c9effda48597bfee439acb37c91458a100580c97c84da6a142d2cc5b6 + 55c6c9f969593f24c75a85e7a150b876671356aa68ceb8e77c563a645897643e + 906ef33de15bb0d94883b7797d8cb3c889b9f59bceebeb171e65f1546faf1c37 + 437e3870342ef4cb5749398ead9381504403e7e1f99efadab95f4a607678b400 + 6471f2f30497486e289fc8977cbb89c495cf0d5ff58af2b1f479a497a28165e6 + dde1f80b0ca42fb43917c24e6016c19e4a8d28de9c50cd0a523a318866bdc0eb + 941d4ac025f5d6f0142fb785b27f7a221729466dc83d45fd206cce102c012eaf + 045f23ea9131b8039001c8f13d22152f7b3c2e91adcf8c555354eaf39e7a7b48 +" +for patch in $_patches ; do + distfiles+=" ${_patchurl}/${patch}${_patchtag}>${patch}" +done +skip_extraction="$_patches" + +post_extract() { + for patch in $_patches ; do + patch -p1 < "$XBPS_SRCDISTDIR/${pkgname}-${version}/${patch}" + done +} pre_build() { - CC="$CXX" - LDFLAGS+=" -lpari" - make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI" + CXXFLAGS="-fPIC" } pre_install() { @@ -27,13 +63,8 @@ pre_install() { do_check() { echo "Testing lcalc ..." - . "${FILESDIR}/test" > test.log - case "$XBPS_TARGET_MACHINE" in - i686) OUT="${FILESDIR}/test.i686" ;; - *-musl) OUT="${FILESDIR}/test.musl" ;; - *) OUT="${FILESDIR}/test.out" ;; - esac - diff "$OUT" test.log && echo PASS + sh "${FILESDIR}"/test > test.log + diff "${FILESDIR}"/test.out test.log && echo PASS } lcalc-devel_package() { From 3fb1c5a715fc73dc6ac9260bfdfe240b2b63387e Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Wed, 7 Apr 2021 22:08:40 -0300 Subject: [PATCH 3/3] Update srcpkgs/lcalc/template MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Érico Nogueira Rolim <34201958+ericonr@users.noreply.github.com> --- srcpkgs/lcalc/template | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template index 19396f11643c..cf4fa3762e33 100644 --- a/srcpkgs/lcalc/template +++ b/srcpkgs/lcalc/template @@ -26,8 +26,7 @@ _patches=" pari-mem.patch pari_include.patch time.h.patch - using_namespace_std.patch -" + using_namespace_std.patch" checksum+=" bd39a43b24a332e1826e667f85ca2ce2ca14749d56f60069cd886c96f55e9e3c d8c660f68f33b6eeb4b801d4028faaaaccbfff5797efe654bb6367e0a687542d