From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: X-Original-To: caml-list@sympa.inria.fr Delivered-To: caml-list@sympa.inria.fr Received: from mail2-relais-roc.national.inria.fr (mail2-relais-roc.national.inria.fr [192.134.164.83]) by sympa.inria.fr (Postfix) with ESMTPS id A919C7EE5B for ; Fri, 16 May 2014 22:49:12 +0200 (CEST) Received-SPF: None (mail2-smtp-roc.national.inria.fr: no sender authenticity information available from domain of grlmc@urv.cat) identity=pra; client-ip=193.144.16.76; receiver=mail2-smtp-roc.national.inria.fr; envelope-from="grlmc@urv.cat"; x-sender="grlmc@urv.cat"; x-conformance=sidf_compatible Received-SPF: Pass (mail2-smtp-roc.national.inria.fr: domain of grlmc@urv.cat designates 193.144.16.76 as permitted sender) identity=mailfrom; client-ip=193.144.16.76; receiver=mail2-smtp-roc.national.inria.fr; envelope-from="grlmc@urv.cat"; x-sender="grlmc@urv.cat"; x-conformance=sidf_compatible; x-record-type="v=spf1" Received-SPF: None (mail2-smtp-roc.national.inria.fr: no sender authenticity information available from domain of postmaster@mta04.urv.cat) identity=helo; client-ip=193.144.16.76; receiver=mail2-smtp-roc.national.inria.fr; envelope-from="grlmc@urv.cat"; x-sender="postmaster@mta04.urv.cat"; x-conformance=sidf_compatible X-IronPort-Anti-Spam-Filtered: true X-IronPort-Anti-Spam-Result: As8DABV5dlPBkBBMnGdsb2JhbABZgWwGgWNLAQGCdLlahz0BgRcWDgEBAQEBCAsJCRQogiwIFQYrGQEGGAUjAgUhAhsGEgIlAQQbAxACBIgkAQieEo8ihGOgBoEqjHSDLTaBFQSNR4IOZ4pZhiyOaQ X-IPAS-Result: As8DABV5dlPBkBBMnGdsb2JhbABZgWwGgWNLAQGCdLlahz0BgRcWDgEBAQEBCAsJCRQogiwIFQYrGQEGGAUjAgUhAhsGEgIlAQQbAxACBIgkAQieEo8ihGOgBoEqjHSDLTaBFQSNR4IOZ4pZhiyOaQ X-IronPort-AV: E=Sophos;i="4.97,1069,1389740400"; d="scan'208";a="74133421" Received: from mta04.urv.cat ([193.144.16.76]) by mail2-smtp-roc.national.inria.fr with ESMTP; 16 May 2014 22:49:12 +0200 X-IronPort-AV: E=Sophos;i="4.97,1069,1389740400"; d="scan'208";a="50869880" Received: from pmbox1.urv.cat ([193.144.16.40]) by mta.urv.cat with ESMTP; 16 May 2014 22:49:12 +0200 Received: from Carlos1 (119.Red-79-154-71.dynamicIP.rima-tde.net [79.154.71.119]) (using TLSv1 with cipher AES128-SHA (128/128 bits)) (No client certificate requested) by pmbox1.urv.cat (Postfix) with ESMTPSA id 2E8FE1C744; Fri, 16 May 2014 22:49:05 +0200 (CEST) From: "GRLMC" To: "GRLMC" Date: Fri, 16 May 2014 22:49:14 +0200 Message-ID: <8CF97BCCCD7048A685E1AAC770C02FA9@Carlos1> MIME-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Mailer: Microsoft Office Outlook 11 X-MIMEOLE: Produced By Microsoft MimeOLE V6.0.6000.16669 Thread-index: Ac9xSEwE5cRar5h3Q7CFft5WvZf8Bw== X-Validation-by: grlmc@urv.cat Subject: [Caml-list] AlCoB 2014: call for participation *To be removed from our mailing list, please respond to this message with U= NSUBSCRIBE in the subject line* ********************************************************************* 1st INTERNATIONAL CONFERENCE ON ALGORITHMS FOR COMPUTATIONAL BIOLOGY AlCoB 2014 Tarragona, Spain July 1-3, 2014 http://grammars.grlmc.com/alcob2014/ ********************************************************************* PROGRAM Tuesday, July 1: 9:15 - 10:15 Registration 10:15 - 10:25 Opening 10:25 - 11:15 Michael Galperin: Comparative Genomics Approaches to Identify= ing Functionally Related Genes =E2=80=93 Invited Lecture 11:15 - 11:45 Coffee Break 11:45 - 13:00 Liana Amaya Moreno, Ozlem Defterli, Armin F=C3=BCgenschuh, G= erhard-Wilhelm Weber: Vester's Sensitivity Model for Genetic Networks with = Time-Discrete Dynamics Sebastian Wandelt, Ulf Leser: RRCA: Ultra-fast Multiple In-Species Genome A= lignments David A. Rosenblueth, Stalin Mu=C3=B1oz, Miguel Carrillo, Eugenio Azpeitia:= Inference of Boolean Networks from Gene Interaction Graphs using a SAT Sol= ver 13:00 - 14:30 Lunch 14:30 - 15:45 Laurent Lemarchand, Reinhardt Euler, Congping Lin, Imogen Sp= arkes: Modeling the Geometry of the Endoplasmic Reticulum Network Sean Maxwell, Mark R. Chance, Mehmet Koyut=C3=BCrk: Efficiently Enumerating= All Connected Induced Subgraphs of a Large Molecular Network Bogdan Iancu, Diana-Elena Gratie, Sepinoud Azimi, Ion Petre: On the Impleme= ntation of Quantitative Model Refinement 15:45 - 16:00 Break 16:00 - 16:50 Jason Papin: Network Analysis of Microbial Pathogens =E2=80= =93 Invited Lecture Wednesday, July 2: 9:00 - 9:50 Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and R= NA (I) =E2=80=93 Invited Tutorial 9:50 - 10:00 Break 10:00 - 11:15 Dimitris Polychronopoulos, Anastasia Krithara, Christoforos = Nikolaou, Giorgos Paliouras, Yannis Almirantis, George Giannakopoulos: Anal= ysis and Classification of Constrained DNA Elements with N-gram Graphs and = Genomic Signatures Inken Wohlers, Mathilde Le Boudic-Jamin, Hristo Djidjev, Gunnar W. Klau, Ru= men Andonov: Exact Protein Structure Classification Using the Maximum Conta= ct Map Overlap Metric Tomohiko Ohtsuki, Naoki Nariai, Kaname Kojima, Takahiro Mimori, Yukuto Sato= , Yosuke Kawai, Yumi Yamaguchi-Kabata, Testuo Shibuya, Masao Nagasaki: SVEM= : A Structural Variant Estimation Method using Multi-Mapped Reads on Breakp= oints 11:15 - 11:45 Coffee Break 11:45 - 13:00 Claire Lemaitre, Liviu Ciortuz, Pierre Peterlongo: Mapping-f= ree and Assembly-free Discovery of Inversion Breakpoints from Raw NGS Reads Giuseppe Narzisi, Bud Mishra, Michael C. Schatz: On Algorithmic Complexity = of Biomolecular Sequence Assembly Problem Ivo Hedtke, Ioana Lemnian, Matthias M=C3=BCller-Hannemann, Ivo Grosse: On O= ptimal Read Trimming in Next Generation Sequencing and Its Complexity 13:00 - 14:30 Lunch 14:30 - 15:20 Annie Chateau, Rodolphe Giroudeau: Complexity and Polynomial= -Time Approximation Algorithms around the Scaffolding Problem Ernst Althaus, Andreas Hildebrandt, Anna Katharina Hildebrandt: A Greedy Al= gorithm for Hierarchical Complete Linkage Clustering 15:30 Visit of the City Thursday, July 3: 9:00 - 9:50 Uwe Ohler: Decoding Non-coding Regulatory Regions in DNA and R= NA (II) =E2=80=93 Invited Tutorial 9:50 - 10:00 Break 10:00 - 11:15 Carla Negri Lintzmayer, Zanoni Dias: On Sorting of Signed Pe= rmutations by Prefix and Suffix Reversals and Transpositions Thiago da Silva Arruda, Ulisses Dias, Zanoni Dias: Heuristics for the Sorti= ng by Length-Weighted Inversions Problem on Signed Permutations Alexander Grigoriev, Steven Kelk, Nela Leki=C4=87: On Low Treewidth Graphs = and Supertrees 11:15 - 11:45 Coffee Break 11:45 - 13:00 Carla Negri Lintzmayer, Zanoni Dias: On the Diameter of Rear= rangement Problems Amina Noor, Aitzaz Ahmad, Bilal Wajid, Erchin Serpedin, Mohamed Nounou, Haz= em Nounou: A Closed-Form Solution for Transcription Factor Activity Estimat= ion using Network Component Analysis Kaname Kojima, Naoki Nariai, Takahiro Mimori, Yumi Yamaguchi-Kabata, Yukuto= Sato, Yosuke Kawai, Masao Nagasaki: HapMonster: A Statistically Unified Ap= proach for Variant Calling and Haplotyping Based on Phase-Informative Reads 13:00 Closing