Bibtex problems

* Bibtex problems
@ 2009-01-27  9:42 Pau
  2009-01-28 21:43 ` Pau
  0 siblings, 1 reply; 6+ messages in thread
From: Pau @ 2009-01-27  9:42 UTC (permalink / raw)
  To: mailing list for ConTeXt users

Hello,

I have followed the indications of the wiki. In my document, I have:

\usemodule[bib]
\usemodule[bibltx]
\setupbibtex[database=cole]
\setuppublications[numbering=yes, sort=author, criterium=all]

where cole.bib contains entries such as

-------------------
@ARTICLE{Baker07,
   author = {{Baker}, J.~G. and {Boggs}, W.~D. and {Centrella}, J. and
{Kelly}, B.~J. and
        {McWilliams}, S.~T. and {Miller}, M.~C. and {van Meter}, J.~R.
        },
    title = "{Modeling Kicks from the Merger of Nonprecessing Black
Hole Binaries}",
  journal = {Astrophysical Journal},
   eprint = {arXiv:astro-ph/0702390},
 keywords = {Black Hole Physics, Galaxies: Nuclei, Gravitational
Waves, Relativity},
     year = 2007,
    month = oct,
   volume = 668,
    pages = {1140-1144},
      doi = {10.1086/521330},
   adsurl = {http://adsabs.harvard.edu/abs/2007ApJ...668.1140B},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}

@ARTICLE{Baker08,
   author = {{Baker}, J.~G. and {Boggs}, W.~D. and {Centrella}, J. and
{Kelly}, B.~J. and
        {McWilliams}, S.~T. and {Miller}, M.~C. and {van Meter}, J.~R.
        },
    title = "{Modeling Kicks from the Merger of Generic Black Hole Binaries}",
  journal = {Astrophysical Journal},
archivePrefix = "arXiv",
   eprint = {0802.0416},
 keywords = {Black Hole Physics, Galaxies: Nuclei, Gravitational
Waves, Relativity},
     year = 2008,
    month = jul,
   volume = 682,
    pages = {L29-L32},
      doi = {10.1086/590927},
   adsurl = {http://adsabs.harvard.edu/abs/2008ApJ...682L..29B},
  adsnote = {Provided by the SAO/NASA Astrophysics Data System}
}
---------------------------------------------------------------

Later in the ConTeXt document, I have

\completepublications[criterium=all]

Nevertheless, when I try to texexec it, I get:

------------------------------------------------------------------
Completed box being shipped out [11.10]
Memory usage before: 12219&652992; after: 3054&650077; still untouched: 2428943

title           : - References
! Undefined control sequence.
\@@pb@journal ->\apj

<argument> ... \it \csname @@pb@journal\endcsname
                                                  \egroup
\firstoftwoarguments #1#2->#1

\@@pvdataarticle ... } {\insertcrossref {In }{}{}}
                                                  \insertvolume {, } {\inser...

\dotypesetapublication ...ve {\getvalue {pbdt-#1}}
                                                  \fi \egroup
<argument> ...etapublication {2007ApJ...668.1140B}
                                                  \strut
...
l.906 \completepublications[criterium=all]
?
-------------------------------------------------------------------------------

\apj is the shortcut used in bibtex for Astrophysical Journal but, as
you can see, I have substituted it for the full name everywhere in the
cole.bib file

As a matter of fact, and just in case of,

grep 'apj' GW2.tex

and

grep 'apj' cole.bib

yield nothing

A bit more of information: This is

spree(p3)| uname -a
OpenBSD spree 4.4 GENERIC#1638 i386

and

spree(p3)| texexec -v
TeXExec | version 6.2.0 - 1997-2006 - PRAGMA ADE/POD

The full output of texexec follows below. As you can see, there are a
lot of warnings, but they look as they look when in LaTeX I compile
for the first time the document. The warnings disappear when I
recompile it, because it needs a second time. I'm not sure of the
meaning in ConTeXt.

Any hint?

Help will be appreciated

Pau

-----------------------------------------------------
spree(p3)| texexec GW2.tex
TeXExec | processing document 'GW2.tex'
TeXExec | no ctx file found
TeXExec | tex processing method: context
TeXExec | TeX run 1
TeXExec | writing option file GW2.top
TeXExec | using randomseed 534
TeXExec | tex engine: pdftex
TeXExec | tex format: cont-en
This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7)
 %&-line parsing enabled.
 (/usr/local/share/texmf/web2c/natural.tcx)
entering extended mode
(./GW2.tex

ConTeXt  ver: 2008.05.21 15:21 MKII  fmt: 2009.1.13  int: english/english

language        : language en is active
system          : cont-new loaded
(/usr/local/share/texmf-dist/tex/context/base/cont-new.tex
systems         : beware: some patches loaded from cont-new.tex
(/usr/local/share/texmf-dist/tex/context/base/cont-new.mkii)
(/usr/local/share/texmf-dist/tex/context/base/cont-mtx.tex))
system          : cont-old loaded
(/usr/local/share/texmf-dist/tex/context/base/cont-old.tex
loading         : Context Old Macros
)
system          : cont-fil loaded
(/usr/local/share/texmf-dist/tex/context/base/cont-fil.tex
loading         : Context File Synonyms
)
system          : cont-sys loaded
(/home/pau/treball/texinputs/cont-sys.tex
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex))
bodyfont        : 12pt rm is loaded
language        : patterns en->ec:ec->1->2:3 uk->ec:ec->2->2:3 de->texnansi:tex
nansi->3->2:3 de->ec:ec->4->2:3 fr->texnansi:texnansi->5->2:3 fr->ec:ec->6->2:3
 es->ec:ec->7->2:3 pt->texnansi:texnansi->8->2:3 pt->ec:ec->9->2:3 it->texnansi
:texnansi->10->2:3 it->ec:ec->11->2:3 nl->texnansi:texnansi->12->2:3 nl->ec:ec-
>13->2:3 cz->il2:il2->14->2:3 cz->ec:ec->15->2:3 sk->il2:il2->16->2:3 sk->ec:ec
->17->2:3 pl->pl0:pl0->18->2:3 pl->ec:ec->19->2:3 pl->qx:qx->20->2:3 loaded
specials        : tex,postscript,rokicki loaded
system          : GW2.top loaded
(./GW2.top
specials        : loading definition file tpd
(/usr/local/share/texmf-dist/tex/context/base/spec-tpd.tex
specials        : loading definition file fdf
(/usr/local/share/texmf-dist/tex/context/base/spec-fdf.tex
(/usr/local/share/texmf-dist/tex/context/base/spec-fdf.mkii))
specials        : fdf loaded
)
specials        : fdf,tpd loaded
)
systems         : system commands are disabled
system          : module mag-01 loaded
(/usr/local/share/texmf-dist/tex/context/base/s-mag-01.tex
specials        : loading definition file tpd
(/usr/local/share/texmf-dist/tex/context/base/spec-tpd.tex
specials        : loading definition file fdf
(/usr/local/share/texmf-dist/tex/context/base/spec-fdf.tex
(/usr/local/share/texmf-dist/tex/context/base/spec-fdf.mkii))
specials        : fdf loaded
)
specials        : fdf,tpd loaded
color           : mpcmyk color space is supported
color           : mpspot color space is supported
color           : system rgb is global activated
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex))
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex))
(/usr/local/share/texmf-dist/tex/context/base/type-tmf.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-siz.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-one.tex)
(/usr/local/share/texmf-dist/tex/context/base/type-akb.tex)
system          : module bib loaded
(/usr/local/share/texmf-dist/tex/context/bib/t-bib.tex
publications    : loading formatting style from bibl-apa
(/usr/local/share/texmf-dist/tex/context/bib/bibl-apa.tex))
system          : module bibltx loaded
(/usr/local/share/texmf-dist/tex/context/bib/t-bibltx.tex)
publications    : wrote a new auxiliary file GW2.aux
system          : module amsl not found
system          : module newmat loaded
(/usr/local/share/texmf-dist/tex/context/base/m-newmat.tex)
interaction     : active
system          : title,chapter,section not found/processed
system          : title,chapter,section not found/processed
(/usr/local/share/texmf-dist/tex/context/base/pdfr-def.tex)
publications    : loading database from GW2.bbl
(./GW2.bbl)
systems         : begin file GW2 at line 342

Underfull \hbox (badness 10000) in paragraph at lines 346--346
 []| |\**\thedefinedfont**: January 2009

Underfull \hbox (badness 10000) in paragraph at lines 346--346
 []|\**\thedefinedfont**: Editors:

Underfull \hbox (badness 10000) in paragraph at lines 346--346
 []|\**\thedefinedfont**: P. A-S
(./GW2-abstract.tmp
fonts           : resetting map file list
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/original-empty.map}
fonts           : using map file: original-base
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/original-base.map}
fonts           : using map file: original-ams-base
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/original-ams-base.map}
fonts           : using map file: original-public-lm
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/original-public-lm.map}
fonts           : using map file: lm-ec
{/usr/local/share/texmf-dist/fonts/map/dvips/lm/lm-ec.map}
fonts           : using map file: lm-math
{/usr/local/share/texmf-dist/fonts/map/dvips/lm/lm-math.map}
fonts           : using map file: lm-rm
{/usr/local/share/texmf-dist/fonts/map/dvips/lm/lm-rm.map}
fonts           : using map file: 8r-base
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/8r-base.map}
fonts           : using map file: ec-base
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/ec-base.map}
fonts           : using map file: t5-base
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/t5-base.map}
fonts           : using map file: original-ams-euler
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/original-ams-euler.map}
fonts           : using map file: ec-urw-palatino

pdfTeX warning: pdftex (file ec-urw-palatino.map): cannot open font map file
fonts           : using map file: original-youngryu-px
{/usr/local/share/texmf-dist/fonts/map/pdftex/context/original-youngryu-px.map}
 <./AEI_Logo.jpg>
figures         : dimensions of _Logo loaded from figurefile itself
) [MP GW2-mpgraph.4000] [MP GW2-mpgraph.3999]
interaction     : aspect ratio 597.50787 x 845.04684 (b x h)
(/usr/local/share/texmf-dist/tex/context/base/sort-def.tex
(/usr/local/share/texmf-dist/tex/context/base/sort-def.mkii))
(/usr/local/share/texmf-dist/tex/context/base/sort-lan.tex
loading         : Context Sorting Macros (languages)
(/usr/local/share/texmf-dist/tex/context/base/sort-lan.mkii))
interaction     : pdftex code inserted
[1.1]
subject         : - Intention and purpose of GW Notes
[MP GW2-mpgraph.3998] [2.1]
subject         : - Philosophy behind: The Astro-GR meetings
[MP GW2-mpgraph.3997] [3.2]
metapost        : loading metapost library txt
(/usr/local/share/texmf-dist/tex/context/base/meta-txt.tex) [MP GW2-mpgraph.1]
[MP GW2-mpgraph.2] [MP GW2-mpgraph.3] [MP GW2-mpgraph.4] [MP GW2-mpgraph.5]
[4.3]
subject         : - GW Letters highlight article: Astrophysics
section         : 1 Introduction
section         : 2 Available frequencies
[5.4]
section         : 3 Quadrupolar evolution of circular orbits
publications    : warning: cite argument Schutz97 is unknown on 139
[6.5]
publications    : warning: cite argument PM63 is unknown on 139
publications    : warning: cite argument Peters64 is unknown on 139
[7.6]
section         : 4 Binary evolution in strong gravity
[8.7]
section         : 5 Merger and ringdown
publications    : warning: cite argument Echeverria89 is unknown on 139
[9.8]
section         : 6 Gravitational radiation recoil
publications    : warning: cite argument Per62 is unknown on 139
publications    : warning: cite argument Bek73 is unknown on 139
publications    : warning: cite argument Fit83 is unknown on 139
publications    : warning: cite argument FD84 is unknown on 139
publications    : warning: cite argument RR89 is unknown on 139
publications    : warning: cite argument W92 is unknown on 139
publications    : warning: cite argument FHH04 is unknown on 139
publications    : warning: cite argument BQW05 is unknown on 139
publications    : warning: cite argument DG06 is unknown on 139
publications    : warning: cite argument SB07 is unknown on 139
publications    : warning: cite argument BK08 is unknown on 139
publications    : warning: cite argument BKN08 is unknown on 139
publications    : warning: cite argument Schnittman08 is unknown on 139
publications    : warning: cite argument RBK08 is unknown on 139
publications    : warning: cite argument HSL07 is unknown on 139
publications    : warning: cite argument Baker06 is unknown on 139
publications    : warning: cite argument Herrmann07 is unknown on 139
publications    : warning: cite argument Koppitz07 is unknown on 139
publications    : warning: cite argument Campanelli07a is unknown on 139
publications    : warning: cite argument Campanelli07b is unknown on 139
publications    : warning: cite argument Gonzalez07a is unknown on 139
publications    : warning: cite argument Gonzalez07b is unknown on 139
publications    : warning: cite argument Baker07 is unknown on 139
publications    : warning: cite argument LZ08a is unknown on 139
publications    : warning: cite argument Baker08 is unknown on 139
publications    : warning: cite argument LZ08b is unknown on 139
publications    : warning: cite argument Bogdanovic07 is unknown on 139
[10.9]
section         : 7 Summary
{vertical mode: \tracingstats}
{\tracingpages}
{\tracingoutput}
{\tracinglostchars}
{\tracingmacros}
{\tracingparagraphs}
{\tracingrestores}
{\showboxbreadth}
{\showboxdepth}
{\tracinggroups}
{\tracingifs}
{\tracingscantokens}
{\tracingnesting}
{\tracingassigns}
{into \tracingassigns=2}
{\errorstopmode}

{\tracingonline}
{changing \tracingonline=1}

Completed box being shipped out [11.10]
Memory usage before: 12219&652992; after: 3054&650077; still untouched: 2428943

title           : - References
! Undefined control sequence.
\@@pb@journal ->\apj

<argument> ... \it \csname @@pb@journal\endcsname
                                                  \egroup
\firstoftwoarguments #1#2->#1

\@@pvdataarticle ... } {\insertcrossref {In }{}{}}
                                                  \insertvolume {, } {\inser...

\dotypesetapublication ...ve {\getvalue {pbdt-#1}}
                                                  \fi \egroup
<argument> ...etapublication {2007ApJ...668.1140B}
                                                  \strut
...
l.906 \completepublications[criterium=all]
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