* FLOWcharts: stray arrows in clipped regions
@ 2003-02-24 17:09 "Hüsing, Johannes"
2003-02-25 8:41 ` Willi Egger
0 siblings, 1 reply; 4+ messages in thread
From: "Hüsing, Johannes" @ 2003-02-24 17:09 UTC (permalink / raw)
[-- Attachment #1: Type: text/plain, Size: 168 bytes --]
Dear all,
when I process the file attached, I get arrows where they don't belong.
Could somebody guide me to what I am doing wrong here?
Groetjes
Johannes
[-- Attachment #2: strayarrows.tex --]
[-- Type: application/octet-stream, Size: 8860 bytes --]
\setupoutput[pdftex]
\setuppapersize[S6][S6]
\mainlanguage[de]
\useencoding[win]
\setupcolors[state=start, rgb=yes]
\definecolor[labor] [r=0.9, b=0.8, g=0.8]
\definecolor[klinik] [r=0.8, b=0.8, g=0.9]
\definecolor[scanner][r=0.85, b=0.8, g=0.85]
\definecolor[archiv] [r=0.85, b=0.85, g=0.8]
\definecolor[messung][r=0.8, b=0.9, g=0.8]
\definecolor[geninfo][r=0.8, b=0.85, g=0.85]
\definecolor[fremd][r=0.75, b=0.25, g=0.25]
\usemodule[chart]
\setupFLOWcharts[nx=6, ny=5,
dx=1.5\bodyfontsize, dy=1.5\bodyfontsize,
width=5\bodyfontsize, height=3\bodyfontsize,
maxwidth=\textwidth]
%,option=test]
\setupinteraction[state=start]
\setuphead[subject][page=yes]
\starttext
\startFLOWchart[alle]
%%--------------------------------------------------------%%
%%------------------ klinischer Bereich ------------------%%
%%--------------------------------------------------------%%
\setupFLOWcharts[backgroundcolor=klinik]
%%----------------
%% Verlauf
%%----------------
\startFLOWcell
\name{Verlauf}
\location{5,5}
\shape{action}
\connection[lr]{Person}
\text{Verlauf}
\destination{tab:Verlauf}
\stopFLOWcell
%%----------------
%% Befundparameter
%%----------------
\startFLOWcell
\name{Befund}
\location{6,4}
\shape{action}
\text{Befundparameter}
\destination{tab:Befund}
\connection[lr]{Verlauf}
\stopFLOWcell
%%----------------
%% Verlaufsparameter
%%----------------
\startFLOWcell
\name{Labor}
\location{6,5}
\shape{action}
\connection[lr]{Verlauf}
\text{Verlaufsparameter}
\destination{tab:Labor}
\stopFLOWcell
%%----------------
%% Person
%%----------------
\startFLOWcell
\name{Person}
\location{4,5}
\shape{action}
\setupFLOWlines[arrow=no]
\connection[lr]{Exemplar}
\setupFLOWlines[arrow=yes]
\text{Person}
\destination{tab:Person}
\stopFLOWcell
%%----------------
%% Lebewesen
%%----------------
\startFLOWcell
\name{Lebewesen}
\location{4,4}
\shape{action}
\setupFLOWlines[arrow=no]
\connection[lr]{Exemplar}
\setupFLOWlines[arrow=yes]
\text{Lebewesen}
\destination{tab:Lebewesen}
\stopFLOWcell
%%----------------
%% Exemplar
%%----------------
\startFLOWcell
\name{Exemplar}
\location{3,5}
\shape{action}
\text{Exemplar}
\destination{tab:Exemplar}
\stopFLOWcell
%%--------------------------------------------------------%%
%%--------------------- Laborbereich ---------------------%%
%%--------------------------------------------------------%%
\setupFLOWcharts[backgroundcolor=labor]
%%----------------
%% Sample
%%----------------
\startFLOWcell
\name{Sample}
\location{1,5}
\shape{action}
\connection[rl]{Exemplar}
\text{Sample}
\destination{tab:Sample}
\stopFLOWcell
%%----------------
%% Extrakt
%%----------------
\startFLOWcell
\name{Extrakt}
\location{1,4}
\shape{action}
\text{Extrakt}
\destination{tab:Extrakt}
\connection[bt]{Sample}
\stopFLOWcell
%%--------------------
%% markierter Extrakt
%%--------------------
\startFLOWcell
\name{markExtrakt}
\location{2,4}
\shape{action}
\text{markierter Extrakt}
\destination{tab:markExtrakt}
\connection[lr]{Extrakt}
\stopFLOWcell
%%--------------------------------------------------------%%
%%---------------- Scannen, Hybridisieren ----------------%%
%%--------------------------------------------------------%%
\setupFLOWcharts[backgroundcolor=scanner]
%%--------------------
%% Hybridisierung
%%--------------------
\startFLOWcell
\name{Hybridisierung}
\location{2,3}
\shape{action}
\text{Hybridisierung}
\destination{tab:Hybridisierung}
\setupFLOWlines[dash=yes, arrow=no]
\connection[bt]{markExtrakt}
\setupFLOWlines[dash=no, arrow=yes]
\connection[lr]{Chip\-exemplar}
\stopFLOWcell
%%--------------------
%% Chipexemplar
%%--------------------
\startFLOWcell
\name{Chipexemplar}
\location{1,3}
\shape{action}
\text{Chipexemplar}
\destination{tab:ChipExemplar}
\connection[tb]{Chiptyp}
\stopFLOWcell
%%--------------------
%% Chiptyp
%%--------------------
\startFLOWcell
\name{Chiptyp}
\location{1,2}
\shape{action}
\text{Chiptyp}
\destination{tab:ChipTyp}
\stopFLOWcell
%%--------------------
%% Image
%%--------------------
\startFLOWcell
\name{Image}
\location{3,3}
\shape{action}
\connection[lr]{Hybridisierung}
\connection[lr]{CD-Archiv}
\connection[bt]{Scannen}
\text{Image}
\destination{tab:Image}
\stopFLOWcell
%%--------------------
%% Scannen
%%--------------------
\startFLOWcell
\name{Scannen}
\location{3,4}
\shape{action}
\text{Scanverfahren}
\destination{tab:Scannen}
\stopFLOWcell
%%--------------------------------------------------------%%
%%---------------------- Archivieren ---------------------%%
%%--------------------------------------------------------%%
\setupFLOWcharts[backgroundcolor=archiv]
%%--------------------
%% CD
%%--------------------
\startFLOWcell
\name{CD}
\location{2,1}
\shape{action}
\text{Datentr\"ager}
\destination{tab:CD}
\stopFLOWcell
%%--------------------
%% CD-Archiv
%%--------------------
\startFLOWcell
\name{CD-Archiv}
\location{2,2}
\shape{action}
\text{CD-Archivdatei}
\destination{tab:CD-Archiv}
\connection[lr]{Chiptyp}
\connection[tb]{CD}
\stopFLOWcell
%%--------------------
%% Projekt
%%--------------------
\startFLOWcell
\name{Projekt}
\location{3,1}
\shape{action}
\text{Projekt}
\destination{tab:Projekt}
\setupFLOWlines[dash=yes, arrow=no]
\connection[bt]{Image}
\setupFLOWlines[dash=no, arrow=yes]
\stopFLOWcell
%%--------------------------------------------------------%%
%%------------------ Expressionsmessung ------------------%%
%%--------------------------------------------------------%%
\setupFLOWcharts[backgroundcolor=messung]
%%--------------------
%% Messung
%%--------------------
\startFLOWcell
\name{Messung}
\location{4,2}
\shape{action}
\connection[lr]{Image}
\connection[rl]{ProbeSet}
\connection[tb]{Normal}
\text{Messung}
\destination{tab:Messung}
\stopFLOWcell
%%--------------------
%% Normalisierung
%%--------------------
\startFLOWcell
\name{Normal}
\location{4,1}
\shape{action}
\text{Normalisierung}
\destination{tab:Normal}
\stopFLOWcell
%%--------------------------------------------------------%%
%%------------------- Genspezifisches --------------------%%
%%--------------------------------------------------------%%
\setupFLOWcharts[backgroundcolor=geninfo]
%%--------------------
%% Probe Set
%%--------------------
\startFLOWcell
\name{ProbeSet}
\location{5,2}
\shape{action}
\connection[tb]{Gen}
\text{Sondensatz}
\destination{tab:ProbeSet}
\stopFLOWcell
%%--------------------
%% Probe
%%--------------------
\startFLOWcell
\name{Probe}
\location{5,3}
\shape{action}
\connection[tb]{ProbeSet}
\text{Sonde (Oligo)}
\destination{tab:Probe}
\stopFLOWcell
%%--------------------
%% Feature
%%--------------------
\startFLOWcell
\name{Feature}
\location{6,3}
\shape{action}
\connection[lr]{Probe}
\text{Feature}
\destination{tab:Feature}
\stopFLOWcell
%%--------------------
%% Gen
%%--------------------
\startFLOWcell
\name{Gen}
\location{5,1}
\shape{action}
\text{Gen}
\destination{tab:Gen}
\stopFLOWcell
\stopFLOWchart
\subject[diagramm]{Datenbank-Layout}
\FLOWchart[alle]
\subject[dia-scan]{Expressionsmessung}
\setupFLOWcharts[x=1, y=2, nx=3, ny=3]
\FLOWchart[alle]
\subject[dia-labor]{Labor}
\setupFLOWcharts[x=1, y=4, nx=2, ny=2]
\FLOWchart[alle]
\subject[dia-klinik]{biologisch-medizinischer Hintergrund}
\setupFLOWcharts[x=3, y=4, nx=4, ny=2]
\FLOWchart[alle]
\subject[dia-archiv]{Archivierung}
\setupFLOWcharts[x=1, y=1, nx=3, ny=3]
\FLOWchart[alle]
\subject[dia-normal]{Expressionen}
\setupFLOWcharts[x=1, y=1, nx=2, ny=2]
\FLOWchart[alle]
\subject[dia-geninfo]{Gen-bezogene Information}
\setupFLOWcharts[x=4, y=1, nx=3, ny=3]
\FLOWchart[alle]
\stoptext
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: FLOWcharts: stray arrows in clipped regions
2003-02-24 17:09 FLOWcharts: stray arrows in clipped regions "Hüsing, Johannes"
@ 2003-02-25 8:41 ` Willi Egger
2003-02-26 21:16 ` Johannes Hüsing
2003-03-11 23:41 ` Hans Hagen
0 siblings, 2 replies; 4+ messages in thread
From: Willi Egger @ 2003-02-25 8:41 UTC (permalink / raw)
[-- Attachment #1: Type: text/plain, Size: 750 bytes --]
>when I process the file attached, I get arrows where they don't belong.
>Could somebody guide me to what I am doing wrong here?
I processed your chart. - There was no coloring.
I changed the following:
\setupFLOWcharts[background=color, backgroundcolor=klinik]
I grouped the 'sections' of the chart with \bgroup ... \egroup
Within the groups I was unable to use \setupFLOWcharts[background=color,
backgroundcolor=klinik]
so I used \setupFLOWshapes[background=color, backgroundcolor=labor]
When looking at the results, I realise that in the section
'Expressionsmessung' in the lower right corner appears a part of an arrow. I
believe, that this is inherent in the way the charts are set on a grid and
clipped later on. - Inevitable.
Grüße Willi
[-- Attachment #2: strayarrows.tex --]
[-- Type: application/octet-stream, Size: 8793 bytes --]
\setupoutput[pdftex]
\setuppapersize[S6][S6]
\mainlanguage[de]
\useencoding[win]
\setupcolors[state=start, rgb=yes]
\definecolor[labor] [r=0.9, b=0.8, g=0.8]
\definecolor[klinik] [r=0.8, b=0.8, g=0.9]
\definecolor[scanner][r=0.85, b=0.8, g=0.85]
\definecolor[archiv] [r=0.85, b=0.85, g=0.8]
\definecolor[messung][r=0.8, b=0.9, g=0.8]
\definecolor[geninfo][r=0.8, b=0.85, g=0.85]
\definecolor[fremd][r=0.75, b=0.25, g=0.25]
\usemodule[chart]
\setupFLOWcharts[nx=6, ny=5,
dx=1.5\bodyfontsize, dy=1.5\bodyfontsize,
width=5\bodyfontsize, height=3\bodyfontsize,
maxwidth=\textwidth]
%,option=test]
\setupinteraction[state=start]
\setuphead[subject][page=yes]
\starttext
\startFLOWchart[alle]
\setupFLOWcharts[background=color,backgroundcolor=klinik]
%%--------------------------------------------------------%%
%%------------------ klinischer Bereich ------------------%%
%%--------------------------------------------------------%%
\bgroup
\setupFLOWshapes[background=color,backgroundcolor=klinik]
%%----------------
%% Verlauf
%%----------------
\startFLOWcell
\name{Verlauf}
\location{5,5}
\shape{action}
\connection[lr]{Person}
\text{Verlauf}
\destination{tab:Verlauf}
\stopFLOWcell
%%----------------
%% Befundparameter
%%----------------
\startFLOWcell
\name{Befund}
\location{6,4}
\shape{action}
\text{Befundparameter}
\destination{tab:Befund}
\connection[lr]{Verlauf}
\stopFLOWcell
%%----------------
%% Verlaufsparameter
%%----------------
\startFLOWcell
\name{Labor}
\location{6,5}
\shape{action}
\connection[lr]{Verlauf}
\text{Verlaufsparameter}
\destination{tab:Labor}
\stopFLOWcell
%%----------------
%% Person
%%----------------
\startFLOWcell
\name{Person}
\location{4,5}
\shape{action}
\setupFLOWlines[arrow=no]
\connection[lr]{Exemplar}
\setupFLOWlines[arrow=yes]
\text{Person}
\destination{tab:Person}
\stopFLOWcell
%%----------------
%% Lebewesen
%%----------------
\startFLOWcell
\name{Lebewesen}
\location{4,4}
\shape{action}
\setupFLOWlines[arrow=no]
\connection[lr]{Exemplar}
\setupFLOWlines[arrow=yes]
\text{Lebewesen}
\destination{tab:Lebewesen}
\stopFLOWcell
%%----------------
%% Exemplar
%%----------------
\startFLOWcell
\name{Exemplar}
\location{3,5}
\shape{action}
\text{Exemplar}
\destination{tab:Exemplar}
\stopFLOWcell
\egroup
%%--------------------------------------------------------%%
%%--------------------- Laborbereich ---------------------%%
%%--------------------------------------------------------%%
\bgroup
\setupFLOWshapes[background=color,backgroundcolor=labor]
%%----------------
%% Sample
%%----------------
\startFLOWcell
\name{Sample}
\location{1,5}
\shape{action}
\connection[rl]{Exemplar}
\text{Sample}
\destination{tab:Sample}
\stopFLOWcell
%%----------------
%% Extrakt
%%----------------
\startFLOWcell
\name{Extrakt}
\location{1,4}
\shape{action}
\text{Extrakt}
\destination{tab:Extrakt}
\connection[bt]{Sample}
\stopFLOWcell
%%--------------------
%% markierter Extrakt
%%--------------------
\startFLOWcell
\name{markExtrakt}
\location{2,4}
\shape{action}
\text{markierter Extrakt}
\destination{tab:markExtrakt}
\connection[lr]{Extrakt}
\stopFLOWcell
\egroup
%%--------------------------------------------------------%%
%%---------------- Scannen, Hybridisieren ----------------%%
%%--------------------------------------------------------%%
\bgroup
\setupFLOWshapes[background=color,backgroundcolor=scanner]
%%--------------------
%% Hybridisierung
%%--------------------
\startFLOWcell
\name{Hybridisierung}
\location{2,3}
\shape{action}
\text{Hybridisierung}
\destination{tab:Hybridisierung}
\setupFLOWlines[dash=yes, arrow=no]
\connection[bt]{markExtrakt}
\setupFLOWlines[dash=no, arrow=yes]
\connection[lr]{Chip\-exemplar}
\stopFLOWcell
%%--------------------
%% Chipexemplar
%%--------------------
\startFLOWcell
\name{Chipexemplar}
\location{1,3}
\shape{action}
\text{Chipexemplar}
\destination{tab:ChipExemplar}
\connection[tb]{Chiptyp}
\stopFLOWcell
%%--------------------
%% Chiptyp
%%--------------------
\startFLOWcell
\name{Chiptyp}
\location{1,2}
\shape{action}
\text{Chiptyp}
\destination{tab:ChipTyp}
\stopFLOWcell
%%--------------------
%% Image
%%--------------------
\startFLOWcell
\name{Image}
\location{3,3}
\shape{action}
\connection[lr]{Hybridisierung}
\connection[lr]{CD-Archiv}
\connection[bt]{Scannen}
\text{Image}
\destination{tab:Image}
\stopFLOWcell
%%--------------------
%% Scannen
%%--------------------
\startFLOWcell
\name{Scannen}
\location{3,4}
\shape{action}
\text{Scanverfahren}
\destination{tab:Scannen}
\stopFLOWcell
\egroup
%%--------------------------------------------------------%%
%%---------------------- Archivieren ---------------------%%
%%--------------------------------------------------------%%
\bgroup
\setupFLOWshapes[background=color,backgroundcolor=archiv]
%%--------------------
%% CD
%%--------------------
\startFLOWcell
\name{CD}
\location{2,1}
\shape{action}
\text{Datentr\"ager}
\destination{tab:CD}
\stopFLOWcell
%%--------------------
%% CD-Archiv
%%--------------------
\startFLOWcell
\name{CD-Archiv}
\location{2,2}
\shape{action}
\text{CD-Archivdatei}
\destination{tab:CD-Archiv}
\connection[lr]{Chiptyp}
\connection[tb]{CD}
\stopFLOWcell
%%--------------------
%% Projekt
%%--------------------
\startFLOWcell
\name{Projekt}
\location{3,1}
\shape{action}
\text{Projekt}
\destination{tab:Projekt}
\setupFLOWlines[dash=yes, arrow=no]
\connection[bt]{Image}
\setupFLOWlines[dash=no, arrow=yes]
\stopFLOWcell
\egroup
%%--------------------------------------------------------%%
%%------------------ Expressionsmessung ------------------%%
%%--------------------------------------------------------%%
\bgroup
\setupFLOWshapes[background=color,backgroundcolor=messung]
%%--------------------
%% Messung
%%--------------------
\startFLOWcell
\name{Messung}
\location{4,2}
\shape{action}
\connection[lr]{Image}
\connection[rl]{ProbeSet}
\connection[tb]{Normal}
\text{Messung}
\destination{tab:Messung}
\stopFLOWcell
%%--------------------
%% Normalisierung
%%--------------------
\startFLOWcell
\name{Normal}
\location{4,1}
\shape{action}
\text{Normalisierung}
\destination{tab:Normal}
\stopFLOWcell
\egroup
%%--------------------------------------------------------%%
%%------------------- Genspezifisches --------------------%%
%%--------------------------------------------------------%%
\setupFLOWcharts[background=color,backgroundcolor=geninfo]
\bgroup
%%--------------------
%% Probe Set
%%--------------------
\startFLOWcell
\name{ProbeSet}
\location{5,2}
\shape{action}
\connection[tb]{Gen}
\text{Sondensatz}
\destination{tab:ProbeSet}
\stopFLOWcell
%%--------------------
%% Probe
%%--------------------
\startFLOWcell
\name{Probe}
\location{5,3}
\shape{action}
\connection[tb]{ProbeSet}
\text{Sonde (Oligo)}
\destination{tab:Probe}
\stopFLOWcell
%%--------------------
%% Feature
%%--------------------
\startFLOWcell
\name{Feature}
\location{6,3}
\shape{action}
\connection[lr]{Probe}
\text{Feature}
\destination{tab:Feature}
\stopFLOWcell
%%--------------------
%% Gen
%%--------------------
\startFLOWcell
\name{Gen}
\location{5,1}
\shape{action}
\text{Gen}
\destination{tab:Gen}
\stopFLOWcell
\egroup
\stopFLOWchart
\subject[diagramm]{Datenbank-Layout}
\FLOWchart[alle]
\subject[dia-scan]{Expressionsmessung}
\setupFLOWcharts[x=1, y=2, nx=3, ny=3]
\FLOWchart[alle]
\subject[dia-labor]{Labor}
\setupFLOWcharts[x=1, y=4, nx=2, ny=2]
\FLOWchart[alle]
\subject[dia-klinik]{Biologisch-medizinischer Hintergrund}
\setupFLOWcharts[x=3, y=4, nx=4, ny=2]
\FLOWchart[alle]
\subject[dia-archiv]{Archivierung}
\setupFLOWcharts[x=1, y=1, nx=3, ny=3]
\FLOWchart[alle]
\subject[dia-normal]{Expressionen}
\setupFLOWcharts[x=1, y=1, nx=2, ny=2]
\FLOWchart[alle]
\subject[dia-geninfo]{Gen-bezogene Information}
\setupFLOWcharts[x=4, y=1, nx=3, ny=3]
\FLOWchart[alle]
\stoptext
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: FLOWcharts: stray arrows in clipped regions
2003-02-25 8:41 ` Willi Egger
@ 2003-02-26 21:16 ` Johannes Hüsing
2003-03-11 23:41 ` Hans Hagen
1 sibling, 0 replies; 4+ messages in thread
From: Johannes Hüsing @ 2003-02-26 21:16 UTC (permalink / raw)
Willi Egger <w.egger@boede.nl> [Tue, Feb 25, 2003 at 09:41:30AM CET]:
> >when I process the file attached, I get arrows where they don't belong.
> >Could somebody guide me to what I am doing wrong here?
>
> I processed your chart. - There was no coloring.
> I changed the following:
>
Dear Willi,
this was very considerate of you. You encouraged me to re-try the
process while varying the installation and configuration. In an
alternative configuration it works. Thank you also for weeding out my
syntax errors.
Regards
Johannes
--
Johannes Hüsing There is something fascinating about science. One gets
hannes@ruhrau.de such wholesale returns of conjecture from such a
trifling investment of fact. Mark Twain
^ permalink raw reply [flat|nested] 4+ messages in thread
* Re: FLOWcharts: stray arrows in clipped regions
2003-02-25 8:41 ` Willi Egger
2003-02-26 21:16 ` Johannes Hüsing
@ 2003-03-11 23:41 ` Hans Hagen
1 sibling, 0 replies; 4+ messages in thread
From: Hans Hagen @ 2003-03-11 23:41 UTC (permalink / raw)
At 09:41 AM 2/25/2003 +0100, you wrote:
> >when I process the file attached, I get arrows where they don't belong.
> >Could somebody guide me to what I am doing wrong here?
>
>I processed your chart. - There was no coloring.
>I changed the following:
>
>\setupFLOWcharts[background=color, backgroundcolor=klinik]
>
>I grouped the 'sections' of the chart with \bgroup ... \egroup
>Within the groups I was unable to use \setupFLOWcharts[background=color,
>backgroundcolor=klinik]
>so I used \setupFLOWshapes[background=color, backgroundcolor=labor]
>
>When looking at the results, I realise that in the section
>'Expressionsmessung' in the lower right corner appears a part of an arrow. I
>believe, that this is inherent in the way the charts are set on a grid and
>clipped later on. - Inevitable.
>
>Grüße Willi
You can play with theoffset
\setupFLOWcharts[offset=-1pt]
Hans
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^ permalink raw reply [flat|nested] 4+ messages in thread
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2003-02-24 17:09 FLOWcharts: stray arrows in clipped regions "Hüsing, Johannes"
2003-02-25 8:41 ` Willi Egger
2003-02-26 21:16 ` Johannes Hüsing
2003-03-11 23:41 ` Hans Hagen
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