* Bib support broken in lmtx
@ 2020-12-25 17:36 Philipp A.
2020-12-25 18:11 ` denis.maier
0 siblings, 1 reply; 8+ messages in thread
From: Philipp A. @ 2020-12-25 17:36 UTC (permalink / raw)
To: ConTeXt Mailing List
[-- Attachment #1.1: Type: text/plain, Size: 5458 bytes --]
Hi! A pretty minimal document using a bibliography is broken for me:
test.lmtx:
\enableregime[utf-8]
\mainlanguage[en]
\usebtxdataset[default][test.bib]
\setupbtx[dataset=default]
\usebtxdefinitions[apa]
\starttext
\cite[authoryear][angerer2016]
%\placelistofpublications[default][method=dataset]
\stoptext
test.bib:
@Article{ angerer2016,
author = {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}}ttner, Maren
and Theis, Fabian J and Marr, Carsten and Buettner, Florian},
doi = {10.1093/bioinformatics/btv715},
issn = {14602059},
journal = {Bioinformatics},
language = {en},
number = {8},
pages = {1241--1243},
title = {{Destiny: Diffusion maps for large-scale single-cell data in R}},
url = {
http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv715
files/103/Angerer et al. - 2016 - destiny diffusion maps for large-scale
single-cel.pdf},
volume = {32},
year = {2016}
}
This log occurs:
❯ context test.lmtx
resolvers | formats | executing runner 'run luametatex format':
~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname="test"
--fmt=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt
--lua=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.lui
--c:currentrun=1 --c:fulljobname="./test.lmtx" --c:input="./test.lmtx"
--c:kindofrun=1 --c:maxnofruns=9
--c:texmfbinpath="~/Library/ConTeXt/tex/texmf-osx-64/bin"
system >
system > ConTeXt ver: 2020.12.24 17:30 LMTX fmt: 2020.12.25
int: english/english
system >
system > 'cont-new.mkxl' loaded
open source > level 1, order 1, name
'~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl'
system > beware: some patches loaded from cont-new.mkiv
close source > level 1, order 1, name
'~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl'
system > files > jobname 'test', input './test.lmtx', result 'test'
fonts > latin modern fonts are not preloaded
languages > language 'en' is active
open source > level 1, order 2, name './test.lmtx'
*publications > adding bib data to set 'default' from source 'test.bib'*
open source > level 2, order 3, name
~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi'
close source > level 2, order 3, name
'~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi'
fonts > preloading latin modern fonts (second stage)
fonts > 'fallback modern-designsize rm 12pt' is loaded
*publications > analyzing previous publication run for
'default'publications > no entry 'angerer2016' found in dataset
'default'*
backend > xmp > using file
'~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml'
pages > flushing realpage 1, userpage 1, subpage 1
close source > level 1, order 3, name './test.lmtx'
mkiv lua stats > used config file: selfautoparent:/texmf/web2c/texmfcnf.lua
mkiv lua stats > used cache path:
~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e
mkiv lua stats > resource resolver: loadtime 0.004 seconds, 0 scans with
scantime 0.000 seconds, 0 shared scans, 13 found files, scanned paths:
<none>
mkiv lua stats > stored bytecode data: 476 modules (0.204 sec), 95 tables
(0.012 sec), 571 chunks (0.216 sec)
mkiv lua stats > traced context: maxstack: 1517, freed: 0, unreachable:
1517
mkiv lua stats > cleaned up reserved nodes: 58 nodes, 435 lists of 434
mkiv lua stats > node memory usage: 6 attribute, 3 attribute_list, 1 glue,
36 glue_spec, 3 kern, 2 penalty, 1 temp, 1 whatsit
mkiv lua stats > node list callback tasks: 8 unique task lists, 7
instances (re)created, 38 calls
mkiv lua stats > used backend: pdf (backend for directly generating pdf
output)
mkiv lua stats > jobdata time: 0.001 seconds saving, 0.001 seconds loading
mkiv lua stats > callbacks: internal: 0, file: 0, direct: 0, late: 0,
function 0, total: 0 (0 per page)
mkiv lua stats > randomizer: resumed with value 0.37495928832999
mkiv lua stats > loaded patterns: en::1, load time: 0.000
mkiv lua stats > loaded fonts: 2 files: latinmodern-math.otf,
lmroman12-regular.otf
mkiv lua stats > font engine: otf 3.112, afm 1.513, tfm 1.000, 7
instances, 3 shared in backend, 3 common vectors, 0 common hashes, load
time 0.156 seconds
*mkiv lua stats > publications load time: 0.004 seconds, 1396 bytes, 1
definitions, 0 shortcuts*
mkiv lua stats > font embedding time: 0.006 seconds, 1 fonts
mkiv lua stats > result saved in file: test.pdf, compresslevel 1,
objectcompresslevel 3
mkiv lua stats > used platform: osx-64, type: unix, binary subtree:
texmf-osx-64
mkiv lua stats > used engine: luametatex version: 2.0808, functionality
level: 20201222, format id: 551, compiler: clang
mkiv lua stats > tex properties: 740027 hash slots used of 2097152, 45811
control sequences, approximate memory usage: 28 MB
mkiv lua stats > lua properties: engine: lua 5.4, used memory: 45 MB, ctx:
43 MB, max: 46 MB, symbol mask: utf (τεχ)
mkiv lua stats > runtime: 0.457 seconds, 1 processed pages, 1 shipped
pages, 2.190 pages/second
system | total runtime: 0.474 seconds of 0.529 seconds
Best, Phil
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___________________________________________________________________________________
If your question is of interest to others as well, please add an entry to the Wiki!
maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context
webpage : http://www.pragma-ade.nl / http://context.aanhet.net
archive : https://bitbucket.org/phg/context-mirror/commits/
wiki : http://contextgarden.net
___________________________________________________________________________________
^ permalink raw reply [flat|nested] 8+ messages in thread* Re: Bib support broken in lmtx 2020-12-25 17:36 Bib support broken in lmtx Philipp A. @ 2020-12-25 18:11 ` denis.maier 2020-12-26 10:29 ` Philipp A. 0 siblings, 1 reply; 8+ messages in thread From: denis.maier @ 2020-12-25 18:11 UTC (permalink / raw) To: ntg-context Don't know if that's related, but you should probably removethe space before the key in your bibfile. ________________________________________ Von: ntg-context <ntg-context-bounces@ntg.nl> im Auftrag von Philipp A. <flying-sheep@web.de> Gesendet: Freitag, 25. Dezember 2020 18:36:33 An: ConTeXt Mailing List Betreff: [NTG-context] Bib support broken in lmtx Hi! A pretty minimal document using a bibliography is broken for me: test.lmtx: \enableregime[utf-8] \mainlanguage[en] \usebtxdataset[default][test.bib] \setupbtx[dataset=default] \usebtxdefinitions[apa] \starttext \cite[authoryear][angerer2016] %\placelistofpublications[default][method=dataset] \stoptext test.bib: @Article{ angerer2016, author = {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}}ttner, Maren and Theis, Fabian J and Marr, Carsten and Buettner, Florian}, doi = {10.1093/bioinformatics/btv715}, issn = {14602059}, journal = {Bioinformatics}, language = {en}, number = {8}, pages = {1241--1243}, title = {{Destiny: Diffusion maps for large-scale single-cell data in R}}, url = {http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv715 files/103/Angerer et al. - 2016 - destiny diffusion maps for large-scale single-cel.pdf}, volume = {32}, year = {2016} } This log occurs: ❯ context test.lmtx resolvers | formats | executing runner 'run luametatex format': ~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname="test" --fmt=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt --lua=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.lui --c:currentrun=1 --c:fulljobname="./test.lmtx" --c:input="./test.lmtx" --c:kindofrun=1 --c:maxnofruns=9 --c:texmfbinpath="~/Library/ConTeXt/tex/texmf-osx-64/bin" system > system > ConTeXt ver: 2020.12.24 17:30 LMTX fmt: 2020.12.25 int: english/english system > system > 'cont-new.mkxl' loaded open source > level 1, order 1, name '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' system > beware: some patches loaded from cont-new.mkiv close source > level 1, order 1, name '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' system > files > jobname 'test', input './test.lmtx', result 'test' fonts > latin modern fonts are not preloaded languages > language 'en' is active open source > level 1, order 2, name './test.lmtx' publications > adding bib data to set 'default' from source 'test.bib' open source > level 2, order 3, name ~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' close source > level 2, order 3, name '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' fonts > preloading latin modern fonts (second stage) fonts > 'fallback modern-designsize rm 12pt' is loaded publications > analyzing previous publication run for 'default' publications > no entry 'angerer2016' found in dataset 'default' backend > xmp > using file '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml' pages > flushing realpage 1, userpage 1, subpage 1 close source > level 1, order 3, name './test.lmtx' mkiv lua stats > used config file: selfautoparent:/texmf/web2c/texmfcnf.lua mkiv lua stats > used cache path: ~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e mkiv lua stats > resource resolver: loadtime 0.004 seconds, 0 scans with scantime 0.000 seconds, 0 shared scans, 13 found files, scanned paths: <none> mkiv lua stats > stored bytecode data: 476 modules (0.204 sec), 95 tables (0.012 sec), 571 chunks (0.216 sec) mkiv lua stats > traced context: maxstack: 1517, freed: 0, unreachable: 1517 mkiv lua stats > cleaned up reserved nodes: 58 nodes, 435 lists of 434 mkiv lua stats > node memory usage: 6 attribute, 3 attribute_list, 1 glue, 36 glue_spec, 3 kern, 2 penalty, 1 temp, 1 whatsit mkiv lua stats > node list callback tasks: 8 unique task lists, 7 instances (re)created, 38 calls mkiv lua stats > used backend: pdf (backend for directly generating pdf output) mkiv lua stats > jobdata time: 0.001 seconds saving, 0.001 seconds loading mkiv lua stats > callbacks: internal: 0, file: 0, direct: 0, late: 0, function 0, total: 0 (0 per page) mkiv lua stats > randomizer: resumed with value 0.37495928832999 mkiv lua stats > loaded patterns: en::1, load time: 0.000 mkiv lua stats > loaded fonts: 2 files: latinmodern-math.otf, lmroman12-regular.otf mkiv lua stats > font engine: otf 3.112, afm 1.513, tfm 1.000, 7 instances, 3 shared in backend, 3 common vectors, 0 common hashes, load time 0.156 seconds mkiv lua stats > publications load time: 0.004 seconds, 1396 bytes, 1 definitions, 0 shortcuts mkiv lua stats > font embedding time: 0.006 seconds, 1 fonts mkiv lua stats > result saved in file: test.pdf, compresslevel 1, objectcompresslevel 3 mkiv lua stats > used platform: osx-64, type: unix, binary subtree: texmf-osx-64 mkiv lua stats > used engine: luametatex version: 2.0808, functionality level: 20201222, format id: 551, compiler: clang mkiv lua stats > tex properties: 740027 hash slots used of 2097152, 45811 control sequences, approximate memory usage: 28 MB mkiv lua stats > lua properties: engine: lua 5.4, used memory: 45 MB, ctx: 43 MB, max: 46 MB, symbol mask: utf (τεχ) mkiv lua stats > runtime: 0.457 seconds, 1 processed pages, 1 shipped pages, 2.190 pages/second system | total runtime: 0.474 seconds of 0.529 seconds Best, Phil ___________________________________________________________________________________ If your question is of interest to others as well, please add an entry to the Wiki! maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context webpage : http://www.pragma-ade.nl / http://context.aanhet.net archive : https://bitbucket.org/phg/context-mirror/commits/ wiki : http://contextgarden.net ___________________________________________________________________________________ ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bib support broken in lmtx 2020-12-25 18:11 ` denis.maier @ 2020-12-26 10:29 ` Philipp A. 2020-12-26 11:38 ` Hans Hagen 2021-01-03 12:30 ` Philipp A. 0 siblings, 2 replies; 8+ messages in thread From: Philipp A. @ 2020-12-26 10:29 UTC (permalink / raw) To: mailing list for ConTeXt users [-- Attachment #1.1: Type: text/plain, Size: 7601 bytes --] Thank you, but whitespace is ignored in .bib file syntax. To prove that whitespace handling isn’t the bug, just try accessing it: \startluacode local current = publications.datasets.default tex.print('\\starttyping') tex.print(table.serialize(current.luadata)) -- to show that the key doesn’t contain weird invisible characters, I’ll type it here: tex.print(table.serialize(current.luadata.angerer2016)) tex.print('\\stoptyping') \stopluacode will display: t={ ["angerer2016"]={ ["author"]="Angerer...", ["category"]="article", ... }, } t={ ["author"]="Angerer...", ["category"]="article", ... } *Another thing*: Uncommenting the \placelistofpublications makes it work, but not in my real document. I didn’t go through the trouble of reproducing when *that* stops working, as I think the root cause can probably be found with my minimal example. Best, Phil Am Fr., 25. Dez. 2020 um 19:24 Uhr schrieb <denis.maier@ub.unibe.ch>: > Don't know if that's related, but you should probably removethe space > before the key in your bibfile. > ________________________________________ > Von: ntg-context <ntg-context-bounces@ntg.nl> im Auftrag von Philipp A. < > flying-sheep@web.de> > Gesendet: Freitag, 25. Dezember 2020 18:36:33 > An: ConTeXt Mailing List > Betreff: [NTG-context] Bib support broken in lmtx > > Hi! A pretty minimal document using a bibliography is broken for me: > > test.lmtx: > \enableregime[utf-8] > \mainlanguage[en] > > \usebtxdataset[default][test.bib] > \setupbtx[dataset=default] > \usebtxdefinitions[apa] > > \starttext > > \cite[authoryear][angerer2016] > > %\placelistofpublications[default][method=dataset] > > \stoptext > > test.bib: > @Article{ angerer2016, > author = {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}}ttner, Maren > and Theis, Fabian J and Marr, Carsten and Buettner, Florian}, > doi = {10.1093/bioinformatics/btv715}, > issn = {14602059}, > journal = {Bioinformatics}, > language = {en}, > number = {8}, > pages = {1241--1243}, > title = {{Destiny: Diffusion maps for large-scale single-cell data in R}}, > url = { > http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv715 > files/103/Angerer et al. - 2016 - destiny diffusion maps for large-scale > single-cel.pdf}, > volume = {32}, > year = {2016} > } > > This log occurs: > > ❯ context test.lmtx > resolvers | formats | executing runner 'run luametatex format': > ~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname="test" > --fmt=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt > --lua=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.lui > --c:currentrun=1 --c:fulljobname="./test.lmtx" --c:input="./test.lmtx" > --c:kindofrun=1 --c:maxnofruns=9 > --c:texmfbinpath="~/Library/ConTeXt/tex/texmf-osx-64/bin" > system > > system > ConTeXt ver: 2020.12.24 17:30 LMTX fmt: 2020.12.25 > int: english/english > system > > system > 'cont-new.mkxl' loaded > open source > level 1, order 1, name > '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' > system > beware: some patches loaded from cont-new.mkiv > close source > level 1, order 1, name > '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' > system > files > jobname 'test', input './test.lmtx', result > 'test' > fonts > latin modern fonts are not preloaded > languages > language 'en' is active > open source > level 1, order 2, name './test.lmtx' > publications > adding bib data to set 'default' from source 'test.bib' > open source > level 2, order 3, name > ~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' > close source > level 2, order 3, name > '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' > fonts > preloading latin modern fonts (second stage) > fonts > 'fallback modern-designsize rm 12pt' is loaded > publications > analyzing previous publication run for 'default' > publications > no entry 'angerer2016' found in dataset 'default' > backend > xmp > using file > '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml' > pages > flushing realpage 1, userpage 1, subpage 1 > close source > level 1, order 3, name './test.lmtx' > > mkiv lua stats > used config file: > selfautoparent:/texmf/web2c/texmfcnf.lua > mkiv lua stats > used cache path: > ~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e > mkiv lua stats > resource resolver: loadtime 0.004 seconds, 0 scans with > scantime 0.000 seconds, 0 shared scans, 13 found files, scanned paths: > <none> > mkiv lua stats > stored bytecode data: 476 modules (0.204 sec), 95 tables > (0.012 sec), 571 chunks (0.216 sec) > mkiv lua stats > traced context: maxstack: 1517, freed: 0, unreachable: > 1517 > mkiv lua stats > cleaned up reserved nodes: 58 nodes, 435 lists of 434 > mkiv lua stats > node memory usage: 6 attribute, 3 attribute_list, 1 > glue, 36 glue_spec, 3 kern, 2 penalty, 1 temp, 1 whatsit > mkiv lua stats > node list callback tasks: 8 unique task lists, 7 > instances (re)created, 38 calls > mkiv lua stats > used backend: pdf (backend for directly generating pdf > output) > mkiv lua stats > jobdata time: 0.001 seconds saving, 0.001 seconds loading > mkiv lua stats > callbacks: internal: 0, file: 0, direct: 0, late: 0, > function 0, total: 0 (0 per page) > mkiv lua stats > randomizer: resumed with value 0.37495928832999 > mkiv lua stats > loaded patterns: en::1, load time: 0.000 > mkiv lua stats > loaded fonts: 2 files: latinmodern-math.otf, > lmroman12-regular.otf > mkiv lua stats > font engine: otf 3.112, afm 1.513, tfm 1.000, 7 > instances, 3 shared in backend, 3 common vectors, 0 common hashes, load > time 0.156 seconds > mkiv lua stats > publications load time: 0.004 seconds, 1396 bytes, 1 > definitions, 0 shortcuts > mkiv lua stats > font embedding time: 0.006 seconds, 1 fonts > mkiv lua stats > result saved in file: test.pdf, compresslevel 1, > objectcompresslevel 3 > mkiv lua stats > used platform: osx-64, type: unix, binary subtree: > texmf-osx-64 > mkiv lua stats > used engine: luametatex version: 2.0808, functionality > level: 20201222, format id: 551, compiler: clang > mkiv lua stats > tex properties: 740027 hash slots used of 2097152, 45811 > control sequences, approximate memory usage: 28 MB > mkiv lua stats > lua properties: engine: lua 5.4, used memory: 45 MB, > ctx: 43 MB, max: 46 MB, symbol mask: utf (τεχ) > mkiv lua stats > runtime: 0.457 seconds, 1 processed pages, 1 shipped > pages, 2.190 pages/second > system | total runtime: 0.474 seconds of 0.529 seconds > > Best, Phil > > ___________________________________________________________________________________ > If your question is of interest to others as well, please add an entry to > the Wiki! > > maillist : ntg-context@ntg.nl / > http://www.ntg.nl/mailman/listinfo/ntg-context > webpage : http://www.pragma-ade.nl / http://context.aanhet.net > archive : https://bitbucket.org/phg/context-mirror/commits/ > wiki : http://contextgarden.net > > ___________________________________________________________________________________ > [-- Attachment #1.2: Type: text/html, Size: 11262 bytes --] [-- Attachment #2: Type: text/plain, Size: 493 bytes --] ___________________________________________________________________________________ If your question is of interest to others as well, please add an entry to the Wiki! maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context webpage : http://www.pragma-ade.nl / http://context.aanhet.net archive : https://bitbucket.org/phg/context-mirror/commits/ wiki : http://contextgarden.net ___________________________________________________________________________________ ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bib support broken in lmtx 2020-12-26 10:29 ` Philipp A. @ 2020-12-26 11:38 ` Hans Hagen 2021-01-03 12:30 ` Philipp A. 1 sibling, 0 replies; 8+ messages in thread From: Hans Hagen @ 2020-12-26 11:38 UTC (permalink / raw) To: mailing list for ConTeXt users, Philipp A. On 12/26/2020 11:29 AM, Philipp A. wrote: > Thank you, but whitespace is ignored in .bib file syntax. To prove that > whitespace handling isn’t the bug, just try accessing it: A \cite is a reference ... without list it doesn't reference anything. The \cite command puts a anchor in the text stream so that we can link that blob with the list. A non referenced variant is: \alwayscite[authoryear][angerer2016] (there are more variants). So, it's actually a feature, not a bug. Hans ----------------------------------------------------------------- Hans Hagen | PRAGMA ADE Ridderstraat 27 | 8061 GH Hasselt | The Netherlands tel: 038 477 53 69 | www.pragma-ade.nl | www.pragma-pod.nl ----------------------------------------------------------------- ___________________________________________________________________________________ If your question is of interest to others as well, please add an entry to the Wiki! maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context webpage : http://www.pragma-ade.nl / http://context.aanhet.net archive : https://bitbucket.org/phg/context-mirror/commits/ wiki : http://contextgarden.net ___________________________________________________________________________________ ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bib support broken in lmtx 2020-12-26 10:29 ` Philipp A. 2020-12-26 11:38 ` Hans Hagen @ 2021-01-03 12:30 ` Philipp A. 2021-01-03 13:04 ` Hans Hagen 2021-01-30 9:50 ` Philipp A. 1 sibling, 2 replies; 8+ messages in thread From: Philipp A. @ 2021-01-03 12:30 UTC (permalink / raw) To: mailing list for ConTeXt users [-- Attachment #1.1: Type: text/plain, Size: 8036 bytes --] So, where do I go with this? Can nobody reproduce it? Should I submit it to the bug tracker? How can I help to get this resolved? Am Sa., 26. Dez. 2020 um 11:29 Uhr schrieb Philipp A. <flying-sheep@web.de>: > Thank you, but whitespace is ignored in .bib file syntax. To prove that > whitespace handling isn’t the bug, just try accessing it: > > \startluacode > local current = publications.datasets.default > tex.print('\\starttyping') > tex.print(table.serialize(current.luadata)) > -- to show that the key doesn’t contain weird invisible characters, I’ll > type it here: > tex.print(table.serialize(current.luadata.angerer2016)) > tex.print('\\stoptyping') > \stopluacode > > will display: > > t={ > ["angerer2016"]={ > ["author"]="Angerer...", > ["category"]="article", > ... > }, > } > t={ > ["author"]="Angerer...", > ["category"]="article", > ... > } > > *Another thing*: Uncommenting the \placelistofpublications makes it work, > but not in my real document. I didn’t go through the trouble of reproducing > when *that* stops working, as I think the root cause can probably be > found with my minimal example. > > Best, Phil > > Am Fr., 25. Dez. 2020 um 19:24 Uhr schrieb <denis.maier@ub.unibe.ch>: > >> Don't know if that's related, but you should probably removethe space >> before the key in your bibfile. >> ________________________________________ >> Von: ntg-context <ntg-context-bounces@ntg.nl> im Auftrag von Philipp A. < >> flying-sheep@web.de> >> Gesendet: Freitag, 25. Dezember 2020 18:36:33 >> An: ConTeXt Mailing List >> Betreff: [NTG-context] Bib support broken in lmtx >> >> Hi! A pretty minimal document using a bibliography is broken for me: >> >> test.lmtx: >> \enableregime[utf-8] >> \mainlanguage[en] >> >> \usebtxdataset[default][test.bib] >> \setupbtx[dataset=default] >> \usebtxdefinitions[apa] >> >> \starttext >> >> \cite[authoryear][angerer2016] >> >> %\placelistofpublications[default][method=dataset] >> >> \stoptext >> >> test.bib: >> @Article{ angerer2016, >> author = {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}}ttner, Maren >> and Theis, Fabian J and Marr, Carsten and Buettner, Florian}, >> doi = {10.1093/bioinformatics/btv715}, >> issn = {14602059}, >> journal = {Bioinformatics}, >> language = {en}, >> number = {8}, >> pages = {1241--1243}, >> title = {{Destiny: Diffusion maps for large-scale single-cell data in R}}, >> url = { >> http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv715 >> files/103/Angerer et al. - 2016 - destiny diffusion maps for large-scale >> single-cel.pdf}, >> volume = {32}, >> year = {2016} >> } >> >> This log occurs: >> >> ❯ context test.lmtx >> resolvers | formats | executing runner 'run luametatex format': >> ~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname="test" >> --fmt=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt >> --lua=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.lui >> --c:currentrun=1 --c:fulljobname="./test.lmtx" --c:input="./test.lmtx" >> --c:kindofrun=1 --c:maxnofruns=9 >> --c:texmfbinpath="~/Library/ConTeXt/tex/texmf-osx-64/bin" >> system > >> system > ConTeXt ver: 2020.12.24 17:30 LMTX fmt: 2020.12.25 >> int: english/english >> system > >> system > 'cont-new.mkxl' loaded >> open source > level 1, order 1, name >> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' >> system > beware: some patches loaded from cont-new.mkiv >> close source > level 1, order 1, name >> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' >> system > files > jobname 'test', input './test.lmtx', result >> 'test' >> fonts > latin modern fonts are not preloaded >> languages > language 'en' is active >> open source > level 1, order 2, name './test.lmtx' >> publications > adding bib data to set 'default' from source 'test.bib' >> open source > level 2, order 3, name >> ~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' >> close source > level 2, order 3, name >> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' >> fonts > preloading latin modern fonts (second stage) >> fonts > 'fallback modern-designsize rm 12pt' is loaded >> publications > analyzing previous publication run for 'default' >> publications > no entry 'angerer2016' found in dataset 'default' >> backend > xmp > using file >> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml' >> pages > flushing realpage 1, userpage 1, subpage 1 >> close source > level 1, order 3, name './test.lmtx' >> >> mkiv lua stats > used config file: >> selfautoparent:/texmf/web2c/texmfcnf.lua >> mkiv lua stats > used cache path: >> ~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e >> mkiv lua stats > resource resolver: loadtime 0.004 seconds, 0 scans with >> scantime 0.000 seconds, 0 shared scans, 13 found files, scanned paths: >> <none> >> mkiv lua stats > stored bytecode data: 476 modules (0.204 sec), 95 >> tables (0.012 sec), 571 chunks (0.216 sec) >> mkiv lua stats > traced context: maxstack: 1517, freed: 0, unreachable: >> 1517 >> mkiv lua stats > cleaned up reserved nodes: 58 nodes, 435 lists of 434 >> mkiv lua stats > node memory usage: 6 attribute, 3 attribute_list, 1 >> glue, 36 glue_spec, 3 kern, 2 penalty, 1 temp, 1 whatsit >> mkiv lua stats > node list callback tasks: 8 unique task lists, 7 >> instances (re)created, 38 calls >> mkiv lua stats > used backend: pdf (backend for directly generating pdf >> output) >> mkiv lua stats > jobdata time: 0.001 seconds saving, 0.001 seconds >> loading >> mkiv lua stats > callbacks: internal: 0, file: 0, direct: 0, late: 0, >> function 0, total: 0 (0 per page) >> mkiv lua stats > randomizer: resumed with value 0.37495928832999 >> mkiv lua stats > loaded patterns: en::1, load time: 0.000 >> mkiv lua stats > loaded fonts: 2 files: latinmodern-math.otf, >> lmroman12-regular.otf >> mkiv lua stats > font engine: otf 3.112, afm 1.513, tfm 1.000, 7 >> instances, 3 shared in backend, 3 common vectors, 0 common hashes, load >> time 0.156 seconds >> mkiv lua stats > publications load time: 0.004 seconds, 1396 bytes, 1 >> definitions, 0 shortcuts >> mkiv lua stats > font embedding time: 0.006 seconds, 1 fonts >> mkiv lua stats > result saved in file: test.pdf, compresslevel 1, >> objectcompresslevel 3 >> mkiv lua stats > used platform: osx-64, type: unix, binary subtree: >> texmf-osx-64 >> mkiv lua stats > used engine: luametatex version: 2.0808, functionality >> level: 20201222, format id: 551, compiler: clang >> mkiv lua stats > tex properties: 740027 hash slots used of 2097152, >> 45811 control sequences, approximate memory usage: 28 MB >> mkiv lua stats > lua properties: engine: lua 5.4, used memory: 45 MB, >> ctx: 43 MB, max: 46 MB, symbol mask: utf (τεχ) >> mkiv lua stats > runtime: 0.457 seconds, 1 processed pages, 1 shipped >> pages, 2.190 pages/second >> system | total runtime: 0.474 seconds of 0.529 seconds >> >> Best, Phil >> >> ___________________________________________________________________________________ >> If your question is of interest to others as well, please add an entry to >> the Wiki! >> >> maillist : ntg-context@ntg.nl / >> http://www.ntg.nl/mailman/listinfo/ntg-context >> webpage : http://www.pragma-ade.nl / http://context.aanhet.net >> archive : https://bitbucket.org/phg/context-mirror/commits/ >> wiki : http://contextgarden.net >> >> ___________________________________________________________________________________ >> > [-- Attachment #1.2: Type: text/html, Size: 11797 bytes --] [-- Attachment #2: Type: text/plain, Size: 493 bytes --] ___________________________________________________________________________________ If your question is of interest to others as well, please add an entry to the Wiki! maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context webpage : http://www.pragma-ade.nl / http://context.aanhet.net archive : https://bitbucket.org/phg/context-mirror/commits/ wiki : http://contextgarden.net ___________________________________________________________________________________ ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bib support broken in lmtx 2021-01-03 12:30 ` Philipp A. @ 2021-01-03 13:04 ` Hans Hagen 2021-01-30 9:50 ` Philipp A. 1 sibling, 0 replies; 8+ messages in thread From: Hans Hagen @ 2021-01-03 13:04 UTC (permalink / raw) To: mailing list for ConTeXt users, Philipp A. On 1/3/2021 1:30 PM, Philipp A. wrote: > So, where do I go with this? > > Can nobody reproduce it? Should I submit it to the bug tracker? How can > I help to get this resolved? wasn't this answered already? ----------------------------------------------------------------- Hans Hagen | PRAGMA ADE Ridderstraat 27 | 8061 GH Hasselt | The Netherlands tel: 038 477 53 69 | www.pragma-ade.nl | www.pragma-pod.nl ----------------------------------------------------------------- ___________________________________________________________________________________ If your question is of interest to others as well, please add an entry to the Wiki! maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context webpage : http://www.pragma-ade.nl / http://context.aanhet.net archive : https://bitbucket.org/phg/context-mirror/commits/ wiki : http://contextgarden.net ___________________________________________________________________________________ ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bib support broken in lmtx 2021-01-03 12:30 ` Philipp A. 2021-01-03 13:04 ` Hans Hagen @ 2021-01-30 9:50 ` Philipp A. 2021-01-30 9:59 ` Thomas A. Schmitz 1 sibling, 1 reply; 8+ messages in thread From: Philipp A. @ 2021-01-30 9:50 UTC (permalink / raw) To: mailing list for ConTeXt users [-- Attachment #1.1: Type: text/plain, Size: 8360 bytes --] Am I caught in a spam filter somewhere? Am So., 3. Jan. 2021 um 13:30 Uhr schrieb Philipp A. <flying-sheep@web.de>: > So, where do I go with this? > > Can nobody reproduce it? Should I submit it to the bug tracker? How can I > help to get this resolved? > > Am Sa., 26. Dez. 2020 um 11:29 Uhr schrieb Philipp A. <flying-sheep@web.de > >: > >> Thank you, but whitespace is ignored in .bib file syntax. To prove that >> whitespace handling isn’t the bug, just try accessing it: >> >> \startluacode >> local current = publications.datasets.default >> tex.print('\\starttyping') >> tex.print(table.serialize(current.luadata)) >> -- to show that the key doesn’t contain weird invisible characters, I’ll >> type it here: >> tex.print(table.serialize(current.luadata.angerer2016)) >> tex.print('\\stoptyping') >> \stopluacode >> >> will display: >> >> t={ >> ["angerer2016"]={ >> ["author"]="Angerer...", >> ["category"]="article", >> ... >> }, >> } >> t={ >> ["author"]="Angerer...", >> ["category"]="article", >> ... >> } >> >> *Another thing*: Uncommenting the \placelistofpublications makes it >> work, but not in my real document. I didn’t go through the trouble of >> reproducing when *that* stops working, as I think the root cause can >> probably be found with my minimal example. >> >> Best, Phil >> >> Am Fr., 25. Dez. 2020 um 19:24 Uhr schrieb <denis.maier@ub.unibe.ch>: >> >>> Don't know if that's related, but you should probably removethe space >>> before the key in your bibfile. >>> ________________________________________ >>> Von: ntg-context <ntg-context-bounces@ntg.nl> im Auftrag von Philipp A. >>> <flying-sheep@web.de> >>> Gesendet: Freitag, 25. Dezember 2020 18:36:33 >>> An: ConTeXt Mailing List >>> Betreff: [NTG-context] Bib support broken in lmtx >>> >>> Hi! A pretty minimal document using a bibliography is broken for me: >>> >>> test.lmtx: >>> \enableregime[utf-8] >>> \mainlanguage[en] >>> >>> \usebtxdataset[default][test.bib] >>> \setupbtx[dataset=default] >>> \usebtxdefinitions[apa] >>> >>> \starttext >>> >>> \cite[authoryear][angerer2016] >>> >>> %\placelistofpublications[default][method=dataset] >>> >>> \stoptext >>> >>> test.bib: >>> @Article{ angerer2016, >>> author = {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}}ttner, Maren >>> and Theis, Fabian J and Marr, Carsten and Buettner, Florian}, >>> doi = {10.1093/bioinformatics/btv715}, >>> issn = {14602059}, >>> journal = {Bioinformatics}, >>> language = {en}, >>> number = {8}, >>> pages = {1241--1243}, >>> title = {{Destiny: Diffusion maps for large-scale single-cell data in >>> R}}, >>> url = { >>> http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv715 >>> files/103/Angerer et al. - 2016 - destiny diffusion maps for large-scale >>> single-cel.pdf}, >>> volume = {32}, >>> year = {2016} >>> } >>> >>> This log occurs: >>> >>> ❯ context test.lmtx >>> resolvers | formats | executing runner 'run luametatex format': >>> ~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname="test" >>> --fmt=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt >>> --lua=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.lui >>> --c:currentrun=1 --c:fulljobname="./test.lmtx" --c:input="./test.lmtx" >>> --c:kindofrun=1 --c:maxnofruns=9 >>> --c:texmfbinpath="~/Library/ConTeXt/tex/texmf-osx-64/bin" >>> system > >>> system > ConTeXt ver: 2020.12.24 17:30 LMTX fmt: 2020.12.25 >>> int: english/english >>> system > >>> system > 'cont-new.mkxl' loaded >>> open source > level 1, order 1, name >>> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' >>> system > beware: some patches loaded from cont-new.mkiv >>> close source > level 1, order 1, name >>> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' >>> system > files > jobname 'test', input './test.lmtx', result >>> 'test' >>> fonts > latin modern fonts are not preloaded >>> languages > language 'en' is active >>> open source > level 1, order 2, name './test.lmtx' >>> publications > adding bib data to set 'default' from source 'test.bib' >>> open source > level 2, order 3, name >>> ~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' >>> close source > level 2, order 3, name >>> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi' >>> fonts > preloading latin modern fonts (second stage) >>> fonts > 'fallback modern-designsize rm 12pt' is loaded >>> publications > analyzing previous publication run for 'default' >>> publications > no entry 'angerer2016' found in dataset 'default' >>> backend > xmp > using file >>> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml' >>> pages > flushing realpage 1, userpage 1, subpage 1 >>> close source > level 1, order 3, name './test.lmtx' >>> >>> mkiv lua stats > used config file: >>> selfautoparent:/texmf/web2c/texmfcnf.lua >>> mkiv lua stats > used cache path: >>> ~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e >>> mkiv lua stats > resource resolver: loadtime 0.004 seconds, 0 scans >>> with scantime 0.000 seconds, 0 shared scans, 13 found files, scanned paths: >>> <none> >>> mkiv lua stats > stored bytecode data: 476 modules (0.204 sec), 95 >>> tables (0.012 sec), 571 chunks (0.216 sec) >>> mkiv lua stats > traced context: maxstack: 1517, freed: 0, unreachable: >>> 1517 >>> mkiv lua stats > cleaned up reserved nodes: 58 nodes, 435 lists of 434 >>> mkiv lua stats > node memory usage: 6 attribute, 3 attribute_list, 1 >>> glue, 36 glue_spec, 3 kern, 2 penalty, 1 temp, 1 whatsit >>> mkiv lua stats > node list callback tasks: 8 unique task lists, 7 >>> instances (re)created, 38 calls >>> mkiv lua stats > used backend: pdf (backend for directly generating pdf >>> output) >>> mkiv lua stats > jobdata time: 0.001 seconds saving, 0.001 seconds >>> loading >>> mkiv lua stats > callbacks: internal: 0, file: 0, direct: 0, late: 0, >>> function 0, total: 0 (0 per page) >>> mkiv lua stats > randomizer: resumed with value 0.37495928832999 >>> mkiv lua stats > loaded patterns: en::1, load time: 0.000 >>> mkiv lua stats > loaded fonts: 2 files: latinmodern-math.otf, >>> lmroman12-regular.otf >>> mkiv lua stats > font engine: otf 3.112, afm 1.513, tfm 1.000, 7 >>> instances, 3 shared in backend, 3 common vectors, 0 common hashes, load >>> time 0.156 seconds >>> mkiv lua stats > publications load time: 0.004 seconds, 1396 bytes, 1 >>> definitions, 0 shortcuts >>> mkiv lua stats > font embedding time: 0.006 seconds, 1 fonts >>> mkiv lua stats > result saved in file: test.pdf, compresslevel 1, >>> objectcompresslevel 3 >>> mkiv lua stats > used platform: osx-64, type: unix, binary subtree: >>> texmf-osx-64 >>> mkiv lua stats > used engine: luametatex version: 2.0808, functionality >>> level: 20201222, format id: 551, compiler: clang >>> mkiv lua stats > tex properties: 740027 hash slots used of 2097152, >>> 45811 control sequences, approximate memory usage: 28 MB >>> mkiv lua stats > lua properties: engine: lua 5.4, used memory: 45 MB, >>> ctx: 43 MB, max: 46 MB, symbol mask: utf (τεχ) >>> mkiv lua stats > runtime: 0.457 seconds, 1 processed pages, 1 shipped >>> pages, 2.190 pages/second >>> system | total runtime: 0.474 seconds of 0.529 seconds >>> >>> Best, Phil >>> >>> ___________________________________________________________________________________ >>> If your question is of interest to others as well, please add an entry >>> to the Wiki! >>> >>> maillist : ntg-context@ntg.nl / >>> http://www.ntg.nl/mailman/listinfo/ntg-context >>> webpage : http://www.pragma-ade.nl / http://context.aanhet.net >>> archive : https://bitbucket.org/phg/context-mirror/commits/ >>> wiki : http://contextgarden.net >>> >>> ___________________________________________________________________________________ >>> >> [-- Attachment #1.2: Type: text/html, Size: 12211 bytes --] [-- Attachment #2: Type: text/plain, Size: 493 bytes --] ___________________________________________________________________________________ If your question is of interest to others as well, please add an entry to the Wiki! maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context webpage : http://www.pragma-ade.nl / http://context.aanhet.net archive : https://bitbucket.org/phg/context-mirror/commits/ wiki : http://contextgarden.net ___________________________________________________________________________________ ^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bib support broken in lmtx 2021-01-30 9:50 ` Philipp A. @ 2021-01-30 9:59 ` Thomas A. Schmitz 0 siblings, 0 replies; 8+ messages in thread From: Thomas A. Schmitz @ 2021-01-30 9:59 UTC (permalink / raw) To: mailing list for ConTeXt users On 1/30/21 10:50 AM, Philipp A. wrote: > Am I caught in a spam filter somewhere? Compiles fine here with 2021.01.28 18:22 Thomas ___________________________________________________________________________________ If your question is of interest to others as well, please add an entry to the Wiki! maillist : ntg-context@ntg.nl / http://www.ntg.nl/mailman/listinfo/ntg-context webpage : http://www.pragma-ade.nl / http://context.aanhet.net archive : https://bitbucket.org/phg/context-mirror/commits/ wiki : http://contextgarden.net ___________________________________________________________________________________ ^ permalink raw reply [flat|nested] 8+ messages in thread
end of thread, other threads:[~2021-01-30 9:59 UTC | newest] Thread overview: 8+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2020-12-25 17:36 Bib support broken in lmtx Philipp A. 2020-12-25 18:11 ` denis.maier 2020-12-26 10:29 ` Philipp A. 2020-12-26 11:38 ` Hans Hagen 2021-01-03 12:30 ` Philipp A. 2021-01-03 13:04 ` Hans Hagen 2021-01-30 9:50 ` Philipp A. 2021-01-30 9:59 ` Thomas A. Schmitz
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