From mboxrd@z Thu Jan 1 00:00:00 1970 X-Msuck: nntp://news.gmane.io/gmane.comp.tex.context/110047 Path: news.gmane.io!.POSTED.blaine.gmane.org!not-for-mail From: "Philipp A." Newsgroups: gmane.comp.tex.context Subject: Bib support broken in lmtx Date: Fri, 25 Dec 2020 18:36:33 +0100 Message-ID: Reply-To: mailing list for ConTeXt users Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="===============4042418333828337388==" Injection-Info: ciao.gmane.io; posting-host="blaine.gmane.org:116.202.254.214"; logging-data="23436"; mail-complaints-to="usenet@ciao.gmane.io" To: ConTeXt Mailing List Original-X-From: ntg-context-bounces@ntg.nl Fri Dec 25 18:41:11 2020 Return-path: Envelope-to: gctc-ntg-context-518@m.gmane-mx.org Original-Received: from zapf.boekplan.nl ([5.39.185.232] helo=zapf.ntg.nl) by ciao.gmane.io with esmtps (TLS1.3:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.92) (envelope-from ) id 1ksr5S-000601-Dp for gctc-ntg-context-518@m.gmane-mx.org; Fri, 25 Dec 2020 18:41:10 +0100 Original-Received: from localhost (localhost [127.0.0.1]) by zapf.ntg.nl (Postfix) with ESMTP id A64261C16C4; Fri, 25 Dec 2020 18:36:49 +0100 (CET) X-Virus-Scanned: Debian amavisd-new at zapf.boekplan.nl Original-Received: from zapf.ntg.nl ([127.0.0.1]) by localhost (zapf.ntg.nl [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id uMeksSAA81UX; Fri, 25 Dec 2020 18:36:48 +0100 (CET) Original-Received: from zapf.ntg.nl (localhost [127.0.0.1]) by zapf.ntg.nl (Postfix) with ESMTP id 98B301C16D2; Fri, 25 Dec 2020 18:36:48 +0100 (CET) Original-Received: from localhost (localhost [127.0.0.1]) by zapf.ntg.nl (Postfix) with ESMTP id 858791C16C4 for ; Fri, 25 Dec 2020 18:36:47 +0100 (CET) X-Virus-Scanned: Debian amavisd-new at zapf.boekplan.nl Original-Received: from zapf.ntg.nl ([127.0.0.1]) by localhost (zapf.ntg.nl [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id va2PkU1dQdjA for ; Fri, 25 Dec 2020 18:36:46 +0100 (CET) Received-SPF: Pass (mailfrom) identity=mailfrom; client-ip=209.85.167.172; helo=mail-oi1-f172.google.com; envelope-from=trueflyingsheep@gmail.com; receiver= Original-Received: from mail-oi1-f172.google.com (mail-oi1-f172.google.com [209.85.167.172]) (using TLSv1.3 with cipher TLS_AES_128_GCM_SHA256 (128/128 bits)) (No client certificate requested) by zapf.ntg.nl (Postfix) with ESMTPS id 736DF1C1683 for ; Fri, 25 Dec 2020 18:36:46 +0100 (CET) Original-Received: by mail-oi1-f172.google.com with SMTP id q205so5226977oig.13 for ; Fri, 25 Dec 2020 09:36:46 -0800 (PST) X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=x-gm-message-state:mime-version:from:date:message-id:subject:to; bh=j5/YkDeviCyi5YC6A2jwRg3fMJIKcNYIlNwbtel/5zw=; b=PdOBAa+nclTbCm9FXvVjN92b7+GDnqmKuRNe7+IzSaI7Q/+04vbaNx8bRepttwks5i keBX753HjoBSsBLmApQpb5DsoiiyhyH3byDi6vb6590Q8bfD8zDguE2Q+FVvIZ4veN/X Rxk+U76vIf9guhh0NfdWsgcHyopx6LT6p2No0gn3M8bJywnLK+hf88yA6AfP1Fua7Ctw LzJD6FDblskUXiN7B6KYUdex9vDlljTMsWO9+QWKEsGfWbAWA1VQwkfXOXrTGl26loKP +x72Ez7fNpTMTwlBd+rwsHbFZrRbAaylOPIoSkXkubHD/L2QPhAOrjCJd03wiUmqNAR8 oklw== X-Gm-Message-State: AOAM532bv9qqngoNTYl3PyUev5DT3f3uUq3LrcAqyXmYJHESudzmTkpQ 9wFFn3R5HcsmXmJ9aQY3DHBiKxf6uo7+JuxTjOe4OtIbw6CVhw== X-Google-Smtp-Source: ABdhPJxTiNJdbVEfYB4TeW0gxW9YaqjzJFK4I9g9GjiY4Rg5DoVrzmu+xDb2VexdQRmVKNlXkASOBBJfqnwsYHk/fgE= X-Received: by 2002:aca:f5d1:: with SMTP id t200mr5898894oih.88.1608917804641; Fri, 25 Dec 2020 09:36:44 -0800 (PST) X-BeenThere: ntg-context@ntg.nl X-Mailman-Version: 2.1.26 Precedence: list List-Id: mailing list for ConTeXt users List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: ntg-context-bounces@ntg.nl Original-Sender: "ntg-context" Xref: news.gmane.io gmane.comp.tex.context:110047 Archived-At: --===============4042418333828337388== Content-Type: multipart/alternative; boundary="00000000000037f22005b74d5ee8" --00000000000037f22005b74d5ee8 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Hi! A pretty minimal document using a bibliography is broken for me: test.lmtx: \enableregime[utf-8] \mainlanguage[en] \usebtxdataset[default][test.bib] \setupbtx[dataset=3Ddefault] \usebtxdefinitions[apa] \starttext \cite[authoryear][angerer2016] %\placelistofpublications[default][method=3Ddataset] \stoptext test.bib: @Article{ angerer2016, author =3D {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}}ttner, Maren and Theis, Fabian J and Marr, Carsten and Buettner, Florian}, doi =3D {10.1093/bioinformatics/btv715}, issn =3D {14602059}, journal =3D {Bioinformatics}, language =3D {en}, number =3D {8}, pages =3D {1241--1243}, title =3D {{Destiny: Diffusion maps for large-scale single-cell data in R}}= , url =3D { http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/= btv715 files/103/Angerer et al. - 2016 - destiny diffusion maps for large-scale single-cel.pdf}, volume =3D {32}, year =3D {2016} } This log occurs: =E2=9D=AF context test.lmtx resolvers | formats | executing runner 'run luametatex format': ~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname=3D"test" --fmt=3D~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe78= 1ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt --lua=3D~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe78= 1ce0dde776fb1556f32e/formats/luametatex/cont-en.lui --c:currentrun=3D1 --c:fulljobname=3D"./test.lmtx" --c:input=3D"./test.lmt= x" --c:kindofrun=3D1 --c:maxnofruns=3D9 --c:texmfbinpath=3D"~/Library/ConTeXt/tex/texmf-osx-64/bin" system > system > ConTeXt ver: 2020.12.24 17:30 LMTX fmt: 2020.12.25 int: english/english system > system > 'cont-new.mkxl' loaded open source > level 1, order 1, name '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' system > beware: some patches loaded from cont-new.mkiv close source > level 1, order 1, name '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl' system > files > jobname 'test', input './test.lmtx', result 'test= ' fonts > latin modern fonts are not preloaded languages > language 'en' is active open source > level 1, order 2, name './test.lmtx' *publications > adding bib data to set 'default' from source 'test.bib'* open source > level 2, order 3, name ~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi= ' close source > level 2, order 3, name '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkv= i' fonts > preloading latin modern fonts (second stage) fonts > 'fallback modern-designsize rm 12pt' is loaded *publications > analyzing previous publication run for 'default'publications > no entry 'angerer2016' found in dataset 'default'* backend > xmp > using file '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml' pages > flushing realpage 1, userpage 1, subpage 1 close source > level 1, order 3, name './test.lmtx' mkiv lua stats > used config file: selfautoparent:/texmf/web2c/texmfcnf.lu= a mkiv lua stats > used cache path: ~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde7= 76fb1556f32e mkiv lua stats > resource resolver: loadtime 0.004 seconds, 0 scans with scantime 0.000 seconds, 0 shared scans, 13 found files, scanned paths: mkiv lua stats > stored bytecode data: 476 modules (0.204 sec), 95 tables (0.012 sec), 571 chunks (0.216 sec) mkiv lua stats > traced context: maxstack: 1517, freed: 0, unreachable: 1517 mkiv lua stats > cleaned up reserved nodes: 58 nodes, 435 lists of 434 mkiv lua stats > node memory usage: 6 attribute, 3 attribute_list, 1 glue, 36 glue_spec, 3 kern, 2 penalty, 1 temp, 1 whatsit mkiv lua stats > node list callback tasks: 8 unique task lists, 7 instances (re)created, 38 calls mkiv lua stats > used backend: pdf (backend for directly generating pdf output) mkiv lua stats > jobdata time: 0.001 seconds saving, 0.001 seconds loading mkiv lua stats > callbacks: internal: 0, file: 0, direct: 0, late: 0, function 0, total: 0 (0 per page) mkiv lua stats > randomizer: resumed with value 0.37495928832999 mkiv lua stats > loaded patterns: en::1, load time: 0.000 mkiv lua stats > loaded fonts: 2 files: latinmodern-math.otf, lmroman12-regular.otf mkiv lua stats > font engine: otf 3.112, afm 1.513, tfm 1.000, 7 instances, 3 shared in backend, 3 common vectors, 0 common hashes, load time 0.156 seconds *mkiv lua stats > publications load time: 0.004 seconds, 1396 bytes, 1 definitions, 0 shortcuts* mkiv lua stats > font embedding time: 0.006 seconds, 1 fonts mkiv lua stats > result saved in file: test.pdf, compresslevel 1, objectcompresslevel 3 mkiv lua stats > used platform: osx-64, type: unix, binary subtree: texmf-osx-64 mkiv lua stats > used engine: luametatex version: 2.0808, functionality level: 20201222, format id: 551, compiler: clang mkiv lua stats > tex properties: 740027 hash slots used of 2097152, 45811 control sequences, approximate memory usage: 28 MB mkiv lua stats > lua properties: engine: lua 5.4, used memory: 45 MB, ctx: 43 MB, max: 46 MB, symbol mask: utf (=CF=84=CE=B5=CF=87) mkiv lua stats > runtime: 0.457 seconds, 1 processed pages, 1 shipped pages, 2.190 pages/second system | total runtime: 0.474 seconds of 0.529 seconds Best, Phil --00000000000037f22005b74d5ee8 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
Hi! A pretty minimal document using a bibliography is= broken for me:

test.lmtx:
\enableregime[utf-8]
\mainl= anguage[en]

<= div>\usebtxdataset[default][test.bib]
\setupbtx[dataset=3Ddefault]
\usebtxdefinitions[= apa]

\starttext=

\cite[authoryear][angerer2016]
=
%\placelistofpublications[de= fault][method=3Ddataset]

\stoptext

test.bib:
= @Article{ angerer2= 016,
author =3D {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}= }ttner, Maren and Theis, Fabian J and Marr, Carsten and Buettner, Florian},=
doi =3D {10.1093/bioinformatics/btv715},
issn =3D {14602059},
journal = =3D {Bioinformatics},<= /div>
language= =3D {en},
number =3D {8},
pages <= span style=3D"color:rgb(86,156,214)">=3D {1241--1243},
title =3D {{Destiny: Diffusion m= aps for large-scale single-cell data in R}},
= url =3D {http://bioinformatics.oxfordjournals.org/lookup/doi/10.109= 3/bioinformatics/btv715 files/103/Angerer et al. - 2016 - destiny diffu= sion maps for large-scale single-cel.pdf},
volu= me =3D {32},=
year =3D {2016}
}

This log occ= urs:

=E2=9D=AF context test.lmtx
resolvers =C2= =A0 =C2=A0 =C2=A0 | formats | executing runner 'run luametatex format&#= 39;: ~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname=3D"te= st" --fmt=3D~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe= 67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt --lua=3D~/Libr= ary/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb15= 56f32e/formats/luametatex/cont-en.lui =C2=A0--c:currentrun=3D1 --c:fulljobn= ame=3D"./test.lmtx" --c:input=3D"./test.lmtx" --c:kindo= frun=3D1 --c:maxnofruns=3D9 --c:texmfbinpath=3D"~/Library/ConTeXt/tex/= texmf-osx-64/bin"
system =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0> system =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0> ConTeXt =C2=A0ver: 2020.12.2= 4 17:30 LMTX =C2=A0fmt: 2020.12.25 =C2=A0int: english/english
system =C2= =A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0>
system =C2=A0 =C2=A0 =C2=A0 =C2=A0 = =C2=A0> 'cont-new.mkxl' loaded
open source =C2=A0 =C2=A0 >= level 1, order 1, name '~/Library/ConTeXt/tex/texmf-context/tex/contex= t/base/mkxl/cont-new.mkxl'
system =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0= > beware: some patches loaded from cont-new.mkiv
close source =C2=A0 = =C2=A0> level 1, order 1, name '~/Library/ConTeXt/tex/texmf-context/= tex/context/base/mkxl/cont-new.mkxl'
system =C2=A0 =C2=A0 =C2=A0 =C2= =A0 =C2=A0> files > jobname 'test', input './test.lmtx= 9;, result 'test'
fonts =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 > = latin modern fonts are not preloaded
languages =C2=A0 =C2=A0 =C2=A0 >= language 'en' is active
open source =C2=A0 =C2=A0 > level 1,= order 2, name './test.lmtx'
publications =C2=A0 =C2=A0> a= dding bib data to set 'default' from source 'test.bib'<= br>open source =C2=A0 =C2=A0 > level 2, order 3, name ~/Library/ConTeXt/= tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi'
close sou= rce =C2=A0 =C2=A0> level 2, order 3, name '~/Library/ConTeXt/tex/tex= mf-context/tex/context/base/mkiv/publ-imp-apa.mkvi'
fonts =C2=A0 =C2= =A0 =C2=A0 =C2=A0 =C2=A0 > preloading latin modern fonts (second stage)<= br>fonts =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 > 'fallback modern-desig= nsize rm 12pt' is loaded
publications =C2=A0 =C2=A0> analyzing= previous publication run for 'default'
publications =C2=A0 =C2= =A0> no entry 'angerer2016' found in dataset 'default'
backend =C2=A0 =C2=A0 =C2=A0 =C2=A0 > xmp > using file '~/L= ibrary/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml'pages =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 > flushing realpage 1, userpag= e 1, subpage 1
close source =C2=A0 =C2=A0> level 1, order 3, name = 9;./test.lmtx'

mkiv lua stats =C2=A0> used config file: selfa= utoparent:/texmf/web2c/texmfcnf.lua
mkiv lua stats =C2=A0> used cache= path: ~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781= ce0dde776fb1556f32e
mkiv lua stats =C2=A0> resource resolver: loadtim= e 0.004 seconds, 0 scans with scantime 0.000 seconds, 0 shared scans, 13 fo= und files, scanned paths: <none>
mkiv lua stats =C2=A0> stored = bytecode data: 476 modules (0.204 sec), 95 tables (0.012 sec), 571 chunks (= 0.216 sec)
mkiv lua stats =C2=A0> traced context: maxstack: 1517, fre= ed: 0, unreachable: 1517
mkiv lua stats =C2=A0> cleaned up reserved n= odes: 58 nodes, 435 lists of 434
mkiv lua stats =C2=A0> node memory u= sage: 6 attribute, 3 attribute_list, 1 glue, 36 glue_spec, 3 kern, 2 penalt= y, 1 temp, 1 whatsit
mkiv lua stats =C2=A0> node list callback tasks:= 8 unique task lists, 7 instances (re)created, 38 calls
mkiv lua stats = =C2=A0> used backend: pdf (backend for directly generating pdf output)mkiv lua stats =C2=A0> jobdata time: 0.001 seconds saving, 0.001 secon= ds loading
mkiv lua stats =C2=A0> callbacks: internal: 0, file: 0, di= rect: 0, late: 0, function 0, total: 0 (0 per page)
mkiv lua stats =C2= =A0> randomizer: resumed with value 0.37495928832999
mkiv lua stats = =C2=A0> loaded patterns: en::1, load time: 0.000
mkiv lua stats =C2= =A0> loaded fonts: 2 files: latinmodern-math.otf, lmroman12-regular.otf<= br>mkiv lua stats =C2=A0> font engine: otf 3.112, afm 1.513, tfm 1.000, = 7 instances, 3 shared in backend, 3 common vectors, 0 common hashes, load t= ime 0.156 seconds
mkiv lua stats =C2=A0> publications load time: = 0.004 seconds, 1396 bytes, 1 definitions, 0 shortcuts
mkiv lua stats= =C2=A0> font embedding time: 0.006 seconds, 1 fonts
mkiv lua stats = =C2=A0> result saved in file: test.pdf, compresslevel 1, objectcompressl= evel 3
mkiv lua stats =C2=A0> used platform: osx-64, type: unix, bina= ry subtree: texmf-osx-64
mkiv lua stats =C2=A0> used engine: luametat= ex version: 2.0808, functionality level: 20201222, format id: 551, compiler= : clang
mkiv lua stats =C2=A0> tex properties: 740027 hash slots used= of 2097152, 45811 control sequences, approximate memory usage: 28 MB
mk= iv lua stats =C2=A0> lua properties: engine: lua 5.4, used memory: 45 MB= , ctx: 43 MB, max: 46 MB, symbol mask: utf (=CF=84=CE=B5=CF=87)
mkiv lua= stats =C2=A0> runtime: 0.457 seconds, 1 processed pages, 1 shipped page= s, 2.190 pages/second
system =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0| total r= untime: 0.474 seconds of 0.529 seconds

Best, P= hil
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