Re: Bib support broken in lmtx

["Philipp A." <flying-sheep@web.de>]

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Thank you, but whitespace is ignored in .bib file syntax. To prove that
whitespace handling isn’t the bug, just try accessing it:

\startluacode
local current = publications.datasets.default
tex.print('\\starttyping')
tex.print(table.serialize(current.luadata))
-- to show that the key doesn’t contain weird invisible characters, I’ll
type it here:
tex.print(table.serialize(current.luadata.angerer2016))
tex.print('\\stoptyping')
\stopluacode

will display:

t={
  ["angerer2016"]={
    ["author"]="Angerer...",
    ["category"]="article",
    ...
  },
}
t={
  ["author"]="Angerer...",
  ["category"]="article",
  ...
}

*Another thing*: Uncommenting the \placelistofpublications makes it work,
but not in my real document. I didn’t go through the trouble of reproducing
when *that* stops working, as I think the root cause can probably be found
with my minimal example.

Best, Phil

Am Fr., 25. Dez. 2020 um 19:24 Uhr schrieb <denis.maier@ub.unibe.ch>:

> Don't know if that's related, but you should probably removethe space
> before the key in your bibfile.
> ________________________________________
> Von: ntg-context <ntg-context-bounces@ntg.nl> im Auftrag von Philipp A. <
> flying-sheep@web.de>
> Gesendet: Freitag, 25. Dezember 2020 18:36:33
> An: ConTeXt Mailing List
> Betreff: [NTG-context] Bib support broken in lmtx
>
> Hi! A pretty minimal document using a bibliography is broken for me:
>
> test.lmtx:
> \enableregime[utf-8]
> \mainlanguage[en]
>
> \usebtxdataset[default][test.bib]
> \setupbtx[dataset=default]
> \usebtxdefinitions[apa]
>
> \starttext
>
> \cite[authoryear][angerer2016]
>
> %\placelistofpublications[default][method=dataset]
>
> \stoptext
>
> test.bib:
> @Article{ angerer2016,
> author = {Angerer, Philipp and Haghverdi, Laleh and B{\"{u}}ttner, Maren
> and Theis, Fabian J and Marr, Carsten and Buettner, Florian},
> doi = {10.1093/bioinformatics/btv715},
> issn = {14602059},
> journal = {Bioinformatics},
> language = {en},
> number = {8},
> pages = {1241--1243},
> title = {{Destiny: Diffusion maps for large-scale single-cell data in R}},
> url = {
> http://bioinformatics.oxfordjournals.org/lookup/doi/10.1093/bioinformatics/btv715
> files/103/Angerer et al. - 2016 - destiny diffusion maps for large-scale
> single-cel.pdf},
> volume = {32},
> year = {2016}
> }
>
> This log occurs:
>
> ❯ context test.lmtx
> resolvers       | formats | executing runner 'run luametatex format':
> ~/Library/ConTeXt/tex/texmf-osx-64/bin/luametatex --jobname="test"
> --fmt=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.fmt
> --lua=~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e/formats/luametatex/cont-en.lui
> --c:currentrun=1 --c:fulljobname="./test.lmtx" --c:input="./test.lmtx"
> --c:kindofrun=1 --c:maxnofruns=9
> --c:texmfbinpath="~/Library/ConTeXt/tex/texmf-osx-64/bin"
> system          >
> system          > ConTeXt  ver: 2020.12.24 17:30 LMTX  fmt: 2020.12.25
> int: english/english
> system          >
> system          > 'cont-new.mkxl' loaded
> open source     > level 1, order 1, name
> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl'
> system          > beware: some patches loaded from cont-new.mkiv
> close source    > level 1, order 1, name
> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkxl/cont-new.mkxl'
> system          > files > jobname 'test', input './test.lmtx', result
> 'test'
> fonts           > latin modern fonts are not preloaded
> languages       > language 'en' is active
> open source     > level 1, order 2, name './test.lmtx'
> publications    > adding bib data to set 'default' from source 'test.bib'
> open source     > level 2, order 3, name
> ~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi'
> close source    > level 2, order 3, name
> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/publ-imp-apa.mkvi'
> fonts           > preloading latin modern fonts (second stage)
> fonts           > 'fallback modern-designsize rm 12pt' is loaded
> publications    > analyzing previous publication run for 'default'
> publications    > no entry 'angerer2016' found in dataset 'default'
> backend         > xmp > using file
> '~/Library/ConTeXt/tex/texmf-context/tex/context/base/mkiv/lpdf-pdx.xml'
> pages           > flushing realpage 1, userpage 1, subpage 1
> close source    > level 1, order 3, name './test.lmtx'
>
> mkiv lua stats  > used config file:
> selfautoparent:/texmf/web2c/texmfcnf.lua
> mkiv lua stats  > used cache path:
> ~/Library/ConTeXt/tex/texmf-cache/luatex-cache/context/5fe67e0bfe781ce0dde776fb1556f32e
> mkiv lua stats  > resource resolver: loadtime 0.004 seconds, 0 scans with
> scantime 0.000 seconds, 0 shared scans, 13 found files, scanned paths:
> <none>
> mkiv lua stats  > stored bytecode data: 476 modules (0.204 sec), 95 tables
> (0.012 sec), 571 chunks (0.216 sec)
> mkiv lua stats  > traced context: maxstack: 1517, freed: 0, unreachable:
> 1517
> mkiv lua stats  > cleaned up reserved nodes: 58 nodes, 435 lists of 434
> mkiv lua stats  > node memory usage: 6 attribute, 3 attribute_list, 1
> glue, 36 glue_spec, 3 kern, 2 penalty, 1 temp, 1 whatsit
> mkiv lua stats  > node list callback tasks: 8 unique task lists, 7
> instances (re)created, 38 calls
> mkiv lua stats  > used backend: pdf (backend for directly generating pdf
> output)
> mkiv lua stats  > jobdata time: 0.001 seconds saving, 0.001 seconds loading
> mkiv lua stats  > callbacks: internal: 0, file: 0, direct: 0, late: 0,
> function 0, total: 0 (0 per page)
> mkiv lua stats  > randomizer: resumed with value 0.37495928832999
> mkiv lua stats  > loaded patterns: en::1, load time: 0.000
> mkiv lua stats  > loaded fonts: 2 files: latinmodern-math.otf,
> lmroman12-regular.otf
> mkiv lua stats  > font engine: otf 3.112, afm 1.513, tfm 1.000, 7
> instances, 3 shared in backend, 3 common vectors, 0 common hashes, load
> time 0.156 seconds
> mkiv lua stats  > publications load time: 0.004 seconds, 1396 bytes, 1
> definitions, 0 shortcuts
> mkiv lua stats  > font embedding time: 0.006 seconds, 1 fonts
> mkiv lua stats  > result saved in file: test.pdf, compresslevel 1,
> objectcompresslevel 3
> mkiv lua stats  > used platform: osx-64, type: unix, binary subtree:
> texmf-osx-64
> mkiv lua stats  > used engine: luametatex version: 2.0808, functionality
> level: 20201222, format id: 551, compiler: clang
> mkiv lua stats  > tex properties: 740027 hash slots used of 2097152, 45811
> control sequences, approximate memory usage: 28 MB
> mkiv lua stats  > lua properties: engine: lua 5.4, used memory: 45 MB,
> ctx: 43 MB, max: 46 MB, symbol mask: utf (τεχ)
> mkiv lua stats  > runtime: 0.457 seconds, 1 processed pages, 1 shipped
> pages, 2.190 pages/second
> system          | total runtime: 0.474 seconds of 0.529 seconds
>
> Best, Phil
>
> ___________________________________________________________________________________
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> ___________________________________________________________________________________
>

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___________________________________________________________________________________
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