Re: Automaticly creating bibliography in md?

[Alan <omvvardar-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>]

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Thank you! Obviously, I will need lua filter... Which I have no idea how to 
make :-)  Well I'll try search and replace in all files from 
Sublime/VSCodium. 


On Wednesday, November 24, 2021 at 10:06:03 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org 
wrote:

> See this discussion: 
> https://groups.google.com/g/pandoc-discuss/c/GfcNA_zCdzc/m/uT3Ivc4aCgAJ
>
>  
>
> *Von:* Maier, Denis Christian (UB) 
> *Gesendet:* Mittwoch, 24. November 2021 10:01
> *An:* 'pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org' <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
> *Betreff:* AW: Automaticly creating bibliography in md?
>
>  
>
> You could probably devise a simple lua-filter for this. But maybe there’s 
> an easier solution.
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *denis...-NSENcxR/0n0@public.gmane.org
> *Gesendet:* Mittwoch, 24. November 2021 10:00
> *An:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org
> *Betreff:* AW: Automaticly creating bibliography in md?
>
>  
>
> You mean wiki-style links [[20200719191401]] being transformed to this: 
> \[\[20200719191401\]\]?
>
>  
>
> I don’t have a solution for this.
>
>  
>
> Maybe someone knows how escaping of brackets can be suppressed when going 
> from markdown to markdown ?
>
>  
>
> Denis
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *Alan
> *Gesendet:* Dienstag, 23. November 2021 16:14
> *An:* pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
> *Betreff:* Re: Automaticly creating bibliography in md?
>
>  
>
> Thank you for your patience Denis.
>
>  
>
> Finally, I have references in file, but... It messed my zettel links... 
> :-( 
>
> I dont care how references look, I just need them at the end
>
>  
>
>  
>
> On Tuesday, November 23, 2021 at 3:09:05 PM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:
>
> Ok. Take this input file:
>
>  
>
> ```
>
> ---
>
> author: DM
>
> title: Test
>
> date: 18-Jul-2020
>
> references:
>
> - type: article-journal
>
>   id: WatsonCrick1953
>
>   author:
>
>   - family: Watson
>
>     given: J. D.
>
>   - family: Crick
>
>     given: F. H. C.
>
>   issued:
>
>     date-parts:
>
>     - - 1953
>
>       - 4
>
>       - 25
>
>   title: 'Molecular structure of nucleic acids: a structure for
>
>     deoxyribose nucleic acid'
>
>   title-short: Molecular structure of nucleic acids
>
>   container-title: Nature
>
>   volume: 171
>
>   issue: 4356
>
>   page: 737-738
>
>   DOI: 10.1038/171737a0
>
>   URL: https://www.nature.com/articles/171737a0
>
>   language: en-GB
>
> ---
>
>  
>
> bla bla  [@WatsonCrick1953, 5]
>
> ```
>
>  
>
> Convert with 
>
> pandoc inputfile.md -o outputfile.md –citeproc -t markdown-citations
>
> gives me :
>
>  
>
> ```
>
> ---
>
> author: DM
>
> date: 18-Jul-2020
>
> references:
>
> - author:
>
>   - family: Watson
>
>     given: J. D.
>
>   - family: Crick
>
>     given: F. H. C.
>
>   container-title: Nature
>
>   DOI: 10.1038/171737a0
>
>   id: WatsonCrick1953
>
>   issue: 4356
>
>   issued:
>
>     date-parts:
>
>     - - 1953
>
>       - 4
>
>       - 25
>
>   language: en-GB
>
>   page: 737-738
>
>   title: "Molecular structure of nucleic acids: a structure for
>
>     deoxyribose nucleic acid"
>
>   title-short: Molecular structure of nucleic acids
>
>   type: article-journal
>
>   URL: https://www.nature.com/articles/171737a0
>
>   volume: 171
>
> title: Test
>
> ---
>
>  
>
> bla bla (Watson and Crick 1953, 5)
>
>  
>
> ::: {#refs .references .csl-bib-body .hanging-indent}
>
> ::: {#ref-WatsonCrick1953 .csl-entry}
>
> Watson, J. D., and F. H. C. Crick. 1953. "Molecular Structure of Nucleic
>
> Acids: A Structure for Deoxyribose Nucleic Acid." *Nature* 171 (4356):
>
> 737--38. https://doi.org/10.1038/171737a0.
>
> :::
>
> :::
>
> ```
>
>  
>
> Denis
>
>  
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *denis...-NSENcxR/0n0@public.gmane.org
> *Gesendet:* Dienstag, 23. November 2021 15:03
> *An:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org
> *Betreff:* AW: Automaticly creating bibliography in md?
>
>  
>
> Not sure, but the xml is your style file. 
>
> Can only guess since I don’t have your bibfile, but maybe the command line 
> arguments were a bit messed up :
>
> pandoc inputfile.md -o inputfile.md --csl sage-harvard.csl --citeproc -t 
> markdown-citations
>
> Add a = between --csl and the style => --csl=sage-harvard.csl
>
> Or, can also just omit the style since you have that in your markdown 
> files anyway.
>
>  
>
> But, if you want the bibliography to appear like in your sublime example, 
> you’ll need to use a filter for this.
>
>  
>
> Denis
>
>  
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *Alan
> *Gesendet:* Dienstag, 23. November 2021 14:09
> *An:* pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
> *Betreff:* Re: Automaticly creating bibliography in md?
>
>  
>
>  
>
> Sure.
>
> I noticed that my yaml is missing. The same file, before this command, 
> produce normal pdf and word output
>
>  
>
> Note: sublime.md is the same note I generated auto bibliography in ST
>
> On Tuesday, November 23, 2021 at 1:48:33 PM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:
>
> Can you post a real example?
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *Alan
> *Gesendet:* Dienstag, 23. November 2021 13:45
> *An:* pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
> *Betreff:* Re: Automaticly creating bibliography in md?
>
>  
>
> I am afraid I miss something here. I try the command, ad receive huge xml 
> code in the end + my citation is like this
>
>  
>
> \[@alexanderTheoryCulturalTrauma2004, 1\]
>
>  
>
> > P.S. : Why do you use reference-doc here? You’re converting from 
> markdown to markdown. 
>
> My bad, I just copy from my docx command :-)
>
>  
>
> On Tuesday, November 23, 2021 at 10:35:25 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org 
> wrote:
>
> Well, IIUC, pandoc works from an input file to an output file. 
>
> If you have your references in your metadata you can probably just do 
> this :
>
>  
>
> pandoc inputfile.md -o inputfile.md –csl sage-harvard.csl –citeproc -t 
> markdown-citations
>
>  
>
> (The important part is `-t markdown-citations`. That’s a big 
> counter-intuitive : It does not mean « give me a markdown file without 
> citations» , but rather « give me a markdown file without the citations 
> extension, i.e., with citations being resolved ».)
>
>  
>
> If that does not work, convert to a temp file first, then rename. You can 
> automate the process with a script or makefile.
>
>  
>
> Denis
>
>  
>
> P.S. : Why do you use reference-doc here? You’re converting from markdown 
> to markdown.
>
>  
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *Alan
> *Gesendet:* Dienstag, 23. November 2021 10:28
> *An:* pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
> *Betreff:* Re: Automaticly creating bibliography in md?
>
>  
>
> I know (and use) this command
>
>  
>
> pandoc --reference-doc my-reference.docx -s text1.md --citeproc --csl 
> sage-harvard.csl -o text2.md
>
>  
>
> and my bib file is referenced in YAML head. 
>
> The question is how to achieve to have bibliography in SAME file I am 
> working with?
>
> I have an animated gif in imgur to show the process, but google doesn't 
> let me post link, message is automatically deleted.
>
>  
>
> On Tuesday, November 23, 2021 at 10:11:59 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org 
> wrote:
>
> You will need to specify your reference library, of course.
>
> --bibliography=you_bibfile.bib
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *denis...-NSENcxR/0n0@public.gmane.org
> *Gesendet:* Dienstag, 23. November 2021 10:11
> *An:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org
> *Betreff:* AW: Automaticly creating bibliography in md?
>
>  
>
> Sure, you can convert from markdown to markdown with resolved citations.
>
>  
>
> pandoc inputfile.md -o outputfile-md -C -t markdown-citations
>
>  
>
> Denis
>
>  
>
> *Von:* pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> *Im 
> Auftrag von *Alan
> *Gesendet:* Dienstag, 23. November 2021 10:08
> *An:* pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
> *Betreff:* Automaticly creating bibliography in md?
>
>  
>
> Hi,
>
> In sublime_zk package for Sublime Text, you can create auto bibliography 
> from citations in document and place it at the end of current .md document. 
> Is it possible to do that with command or some script, which can be 
> executed in Windows 10 :-)
>
> Thanks
>
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