See this discussion: https://groups.google.com/g/pandoc-discuss/c/GfcNA_zCdzc/m/uT3Ivc4aCgAJ
Von: Maier, Denis Christian (UB)
Gesendet: Mittwoch, 24. November 2021 10:01
An: 'pandoc-...@googlegroups.com' <pandoc-...@googlegroups.com>
Betreff: AW: Automaticly creating bibliography in md?
You could probably devise a simple lua-filter for this. But maybe there’s an easier solution.
Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von denis...@unibe.ch
Gesendet: Mittwoch, 24. November 2021 10:00
An: pandoc-...@googlegroups.com
Betreff: AW: Automaticly creating bibliography in md?
You mean wiki-style links [[20200719191401]] being transformed to this: \[\[20200719191401\]\]?
I don’t have a solution for this.
Maybe someone knows how escaping of brackets can be suppressed when going from markdown to markdown ?
Denis
Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 16:14
An: pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
Betreff: Re: Automaticly creating bibliography in md?
Thank you for your patience Denis.
Finally, I have references in file, but... It messed my zettel links... :-(
I dont care how references look, I just need them at the end
On Tuesday, November 23, 2021 at 3:09:05 PM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:
Ok. Take this input file:
```
---
author: DM
title: Test
date: 18-Jul-2020
references:
- type: article-journal
id: WatsonCrick1953
author:
- family: Watson
given: J. D.
- family: Crick
given: F. H. C.
issued:
date-parts:
- - 1953
- 4
- 25
title: 'Molecular structure of nucleic acids: a structure for
deoxyribose nucleic acid'
title-short: Molecular structure of nucleic acids
container-title: Nature
volume: 171
issue: 4356
page: 737-738
DOI: 10.1038/171737a0
URL: https://www.nature.com/articles/171737a0
language: en-GB
---
bla bla [@WatsonCrick1953, 5]
```
Convert with
pandoc inputfile.md -o outputfile.md –citeproc -t markdown-citations
gives me :
```
---
author: DM
date: 18-Jul-2020
references:
- author:
- family: Watson
given: J. D.
- family: Crick
given: F. H. C.
container-title: Nature
DOI: 10.1038/171737a0
id: WatsonCrick1953
issue: 4356
issued:
date-parts:
- - 1953
- 4
- 25
language: en-GB
page: 737-738
title: "Molecular structure of nucleic acids: a structure for
deoxyribose nucleic acid"
title-short: Molecular structure of nucleic acids
type: article-journal
URL: https://www.nature.com/articles/171737a0
volume: 171
title: Test
---
bla bla (Watson and Crick 1953, 5)
::: {#refs .references .csl-bib-body .hanging-indent}
::: {#ref-WatsonCrick1953 .csl-entry}
Watson, J. D., and F. H. C. Crick. 1953. "Molecular Structure of Nucleic
Acids: A Structure for Deoxyribose Nucleic Acid." *Nature* 171 (4356):
737--38. https://doi.org/10.1038/171737a0.
:::
:::
```
Denis
Von: pandoc-...-/JYPxA39Uh4Ykp1iOSErHA@public.gmane.orgm <pandoc-...@googlegroups.com> Im Auftrag von denis...-NSENcxR/0n0@public.gmane.org
Gesendet: Dienstag, 23. November 2021 15:03
An: pandoc-...@googlegroups.com
Betreff: AW: Automaticly creating bibliography in md?
Not sure, but the xml is your style file.
Can only guess since I don’t have your bibfile, but maybe the command line arguments were a bit messed up :
pandoc inputfile.md -o inputfile.md --csl sage-harvard.csl --citeproc -t markdown-citations
Add a = between --csl and the style => --csl=sage-harvard.csl
Or, can also just omit the style since you have that in your markdown files anyway.
But, if you want the bibliography to appear like in your sublime example, you’ll need to use a filter for this.
Denis
Von: pandoc-...-/JYPxA39Uh4Ykp1iOSErHA@public.gmane.orgm <pandoc-...@googlegroups.com> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 14:09
An: pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
Betreff: Re: Automaticly creating bibliography in md?
Sure.
I noticed that my yaml is missing. The same file, before this command, produce normal pdf and word output
Note: sublime.md is the same note I generated auto bibliography in ST
On Tuesday, November 23, 2021 at 1:48:33 PM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:
Can you post a real example?
Von: pandoc-...-/JYPxA39Uh4Ykp1iOSErHA@public.gmane.orgm <pandoc-...@googlegroups.com> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 13:45
An: pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
Betreff: Re: Automaticly creating bibliography in md?
I am afraid I miss something here. I try the command, ad receive huge xml code in the end + my citation is like this
\[@alexanderTheoryCulturalTrauma2004, 1\]
> P.S. : Why do you use reference-doc here? You’re converting from markdown to markdown.
My bad, I just copy from my docx command :-)
On Tuesday, November 23, 2021 at 10:35:25 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:
Well, IIUC, pandoc works from an input file to an output file.
If you have your references in your metadata you can probably just do this :
pandoc inputfile.md -o inputfile.md –csl sage-harvard.csl –citeproc -t markdown-citations
(The important part is `-t markdown-citations`. That’s a big counter-intuitive : It does not mean « give me a markdown file without citations» , but rather « give me a markdown file without the citations extension, i.e., with citations being resolved ».)
If that does not work, convert to a temp file first, then rename. You can automate the process with a script or makefile.
Denis
P.S. : Why do you use reference-doc here? You’re converting from markdown to markdown.
Von: pandoc-...-/JYPxA39Uh4Ykp1iOSErHA@public.gmane.orgm <pandoc-...@googlegroups.com> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 10:28
An: pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
Betreff: Re: Automaticly creating bibliography in md?
I know (and use) this command
pandoc --reference-doc my-reference.docx -s text1.md --citeproc --csl sage-harvard.csl -o text2.md
and my bib file is referenced in YAML head.
The question is how to achieve to have bibliography in SAME file I am working with?
I have an animated gif in imgur to show the process, but google doesn't let me post link, message is automatically deleted.
On Tuesday, November 23, 2021 at 10:11:59 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:
You will need to specify your reference library, of course.
--bibliography=you_bibfile.bib
Von: pandoc-...-/JYPxA39Uh4Ykp1iOSErHA@public.gmane.orgm <pandoc-...@googlegroups.com> Im Auftrag von denis...-NSENcxR/0n0@public.gmane.org
Gesendet: Dienstag, 23. November 2021 10:11
An: pandoc-...@googlegroups.com
Betreff: AW: Automaticly creating bibliography in md?
Sure, you can convert from markdown to markdown with resolved citations.
pandoc inputfile.md -o outputfile-md -C -t markdown-citations
Denis
Von: pandoc-...-/JYPxA39Uh4Ykp1iOSErHA@public.gmane.orgm <pandoc-...@googlegroups.com> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 10:08
An: pandoc-discuss <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
Betreff: Automaticly creating bibliography in md?
Hi,
In sublime_zk package for Sublime Text, you can create auto bibliography from citations in document and place it at the end of current .md document. Is it possible to do that with command or some script, which can be executed in Windows 10 :-)
Thanks
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