With these errors, the converted xml file does not contain the complete tex content, and the result can only be displayed like this
<p> <styled-content style="background-color: editorial">
</styled-content> </p>
<boxed-text>
<p><bold></bold></p>
</boxed-text>
<boxed-text>
<p><bold></bold></p>
</boxed-text>
<p>https://dx.doi.org/10.21037/tp-23-264</p>
These are harmless and expected.
They just indicate that pandoc is not finding and parsing the style files you're loading. It's not really expected that it would (and in many cases it couldn't, because these have too much low-level TeX).
> On Nov 22, 2023, at 1:15 AM, 幻世子衍 <unre...-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org> wrote:
>
> The full log:
>
> pandoc -f latex -t jats_archiving main.tex --resource-path=. --verbose
> [INFO] Could not load include file extsizes.sty at template.tex line 1 column 28
> [INFO] Could not load include file multicol.sty at template.tex line 3 column 22
> [INFO] Could not load include file amsmath.sty at template.tex line 4 column 21
> [INFO] Could not load include file color.sty at template.tex line 6 column 19
> [INFO] Could not load include file xcolor.sty at template.tex line 7 column 22
> [INFO] Could not load include file hyperref.sty at template.tex line 8 column 62
> [INFO] Could not load include file titlesec.sty at template.tex line 10 column 22
> [INFO] Could not load include file authblk.sty at template.tex line 11 column 21
> [