Hello,
I'm very new to using tools such as pandoc so it's very possible that this is a case of mis-reading TFM, but hours of searching thru Stackoverflow and other community posts have left me at a dead-end so I hope someone can help me out.
I'm trying to convert Markdown files that have BiBTeX style citations into Markdown again but expand the citation as a footnote. I've come close using the Chicago Manual of Style 17th edition CSL but am finding that the citation gets expanded twice. A minimal example below:
Original Markdown file - cite.md:
Here is one reference citing the Reactome Project. [^1]
[^1]: @deustachio_2003
BiB file - cite.bib:
@article{deustachio_2003, title={Pentose phosphate pathway}, volume={5}, DOI={10.3180/react_1859.1}, journal={Reactome - a curated knowledgebase of biological pathways}, author={Deustachio, P}, year={2003}, month={Mar}}
Pandoc command:
pandoc cite.md --filter pandoc-citeproc -t markdown_mmd -o cite-new.md --bibliography=cite.bib --csl=chicago-full.csl
Output file - cite-new.md:
Here is one reference citing the Reactome Project.[^1]
<div id="refs" class="references hanging-indent" markdown="1">
<div id="ref-deustachio_2003" markdown="1">
Deustachio, P. “Pentose Phosphate Pathway.” *Reactome - a Curated
Knowledgebase of Biological Pathways* 5 (March 2003).
<https://doi.org/10.3180/react_1859.1>.
</div>
</div>
[^1]: P Deustachio, “Pentose Phosphate Pathway,” *Reactome - a Curated
Knowledgebase of Biological Pathways* 5 (March 2003),
<https://doi.org/10.3180/react_1859.1>
I have not been able to figure out how to prevent the additional citation in the
<div></div> from appearing in the output Markdown file and would appreciate any help in this regard!
FWIW, this is using pandoc 2.9.2.1 on Windows.