Not academic paper, but book on Open Science that includes bibtex references, tables, figures, footnotes and YAML references:

Markdown at https://github.com/openingscience/book/tree/master/_posts

HTML formatted output at http://book.openingscience.org or https://github.com/openingscience/openingscience.github.io

The book was just published as Springer Open Access book (Creative Commons Non-Commercial license), feel free to reuse the content. The markdown formatting is still work in progress, you can start with https://github.com/openingscience/book/blob/master/_posts/2013-08-01-towards_another_scientific_revolution.md.

Best,

Martin

Am Dienstag, 21. Januar 2014 20:36:23 UTC+1 schrieb Pranesh Prakash:

Dear all,
I've been using pandoc-flavoured markdown for a while now to write blog posts, but I'm now trying it out to write an academic (legal) paper. I'm having a tough time getting my head around how to do (non-inline) citations properly (which has to be in the Bluebook style[1]). Would any of you have publicly-available files for finished academic papers written in markdown with footnotes and citations and the accompanying bibliography file?

Regards,
Pranesh

[1]: https://raw2.github.com/citation-style-language/styles/master/bluebook-law-review.csl