Problems installing Pandoc in MacOS Mojave 10.14.5 using homebrew

Problems installing Pandoc in MacOS Mojave 10.14.5 using homebrew

[Gaby L]

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Complete beginner here - hope someone can help.

I needed to use a function in R called pandoc.table and discovered RStudio (
Version 1.2.1335) did not contain any pandoc packages so I found some 
suggestions online and installed pandoc-2.7.3-macOS.pkg.
No luck there - so I tried to install pandoc by using this command in the 
terminal window

brew install pandoc

Below is the code towards the end of the installation:

[...]

==> Downloading 
https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
==> Downloading from 
https://akamai.bintray.com/bb/bb4246119de8f6f8769d4a7baf3127ed66df0edd69bb84c92b1bdeaa90064caf?__gda__=exp=1561867408~hmac=e393ab0dbfd
######################################################################## 
100.0%
Error: No such file or directory @ dir_chdir - /usr/local/Cellar
Warning: Bottle installation failed: building from source.
==> Installing dependencies for pandoc: ghc and cabal-install
==> Installing pandoc dependency: ghc
==> Downloading 
https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
==> Downloading from 
https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867415~hmac=e0e537eaad1
GL-MBP:~ GL$ brew install pandoc-citeproc
==> Installing dependencies for pandoc-citeproc: pandoc
==> Installing pandoc-citeproc dependency: pandoc
==> Downloading 
https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
Already downloaded: 
/Users/GL/Library/Caches/Homebrew/downloads/e5c410b008ebaff5a8464e18ca9a49a0c3cd0aabeafe24e732adf312d2a31f6b--pandoc-2.7.3.mojave.bottle.tar.gz
Error: No such file or directory @ dir_chdir - /usr/local/Cellar
Warning: Bottle installation failed: building from source.
==> Installing dependencies for pandoc: ghc and cabal-install
==> Installing pandoc dependency: ghc
==> Downloading 
https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
==> Downloading from 
https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867750~hmac=bc2610080cc
######################################################################## 
100.0%
Error: No such file or directory @ dir_chdir - /usr/local/Cellar
Warning: Bottle installation failed: building from source.
==> Installing dependencies for ghc: gdbm, openssl, readline, sqlite, xz, 
python and sphinx-doc
==> Installing ghc dependency: gdbm
==> Downloading 
https://homebrew.bintray.com/bottles/gdbm-1.18.1.mojave.bottle.1.tar.gz
######################################################################## 
100.0%
Error: No such file or directory @ dir_chdir - /usr/local/Cellar
Warning: Bottle installation failed: building from source.
==> Downloading https://ftp.gnu.org/gnu/gdbm/gdbm-1.18.1.tar.gz
######################################################################## 
100.0%
Error: An exception occurred within a child process:
  Errno::EPERM: Operation not permitted @ dir_s_mkdir - /usr/local/Cellar
GL-MBP:~ GL$ brew update
Already up-to-date.
=====================================================================================

I am not sure what type of problem I have. I tried to find information 
online but couldn't find any helpful posts or documentation.

If anyone able to help could kindly spare the time to write back that would 
be wonderful.

Thanks a million
Gaby



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Re: Problems installing Pandoc in MacOS Mojave 10.14.5 using homebrew

[mb21]

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sounds like your homebrew installation is somehow messed up. but instead, 
you can also install pandoc from https://pandoc.org/installing.html

On Sunday, June 30, 2019 at 6:57:23 AM UTC+2, Gaby L wrote:
>
> Complete beginner here - hope someone can help.
>
> I needed to use a function in R called pandoc.table and discovered RStudio 
> (Version 1.2.1335) did not contain any pandoc packages so I found some 
> suggestions online and installed pandoc-2.7.3-macOS.pkg.
> No luck there - so I tried to install pandoc by using this command in the 
> terminal window
>
> brew install pandoc
>
> Below is the code towards the end of the installation:
>
> [...]
>
> ==> Downloading 
> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
> ==> Downloading from 
> https://akamai.bintray.com/bb/bb4246119de8f6f8769d4a7baf3127ed66df0edd69bb84c92b1bdeaa90064caf?__gda__=exp=1561867408~hmac=e393ab0dbfd
> ######################################################################## 
> 100.0%
> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
> Warning: Bottle installation failed: building from source.
> ==> Installing dependencies for pandoc: ghc and cabal-install
> ==> Installing pandoc dependency: ghc
> ==> Downloading 
> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
> ==> Downloading from 
> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867415~hmac=e0e537eaad1
> GL-MBP:~ GL$ brew install pandoc-citeproc
> ==> Installing dependencies for pandoc-citeproc: pandoc
> ==> Installing pandoc-citeproc dependency: pandoc
> ==> Downloading 
> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
> Already downloaded: 
> /Users/GL/Library/Caches/Homebrew/downloads/e5c410b008ebaff5a8464e18ca9a49a0c3cd0aabeafe24e732adf312d2a31f6b--pandoc-2.7.3.mojave.bottle.tar.gz
> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
> Warning: Bottle installation failed: building from source.
> ==> Installing dependencies for pandoc: ghc and cabal-install
> ==> Installing pandoc dependency: ghc
> ==> Downloading 
> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
> ==> Downloading from 
> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867750~hmac=bc2610080cc
> ######################################################################## 
> 100.0%
> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
> Warning: Bottle installation failed: building from source.
> ==> Installing dependencies for ghc: gdbm, openssl, readline, sqlite, xz, 
> python and sphinx-doc
> ==> Installing ghc dependency: gdbm
> ==> Downloading 
> https://homebrew.bintray.com/bottles/gdbm-1.18.1.mojave.bottle.1.tar.gz
> ######################################################################## 
> 100.0%
> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
> Warning: Bottle installation failed: building from source.
> ==> Downloading https://ftp.gnu.org/gnu/gdbm/gdbm-1.18.1.tar.gz
> ######################################################################## 
> 100.0%
> Error: An exception occurred within a child process:
>   Errno::EPERM: Operation not permitted @ dir_s_mkdir - /usr/local/Cellar
> GL-MBP:~ GL$ brew update
> Already up-to-date.
>
> =====================================================================================
>
> I am not sure what type of problem I have. I tried to find information 
> online but couldn't find any helpful posts or documentation.
>
> If anyone able to help could kindly spare the time to write back that 
> would be wonderful.
>
> Thanks a million
> Gaby
>
>
>
>

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Re: Problems installing Pandoc in MacOS Mojave 10.14.5 using homebrew

[Gaby L]

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Hello and thanks for your suggestion
Before posting on here I had tried the installer in the webpage you 
suggested too (as I mentioned in my original post, the package for MacOS I 
tried to install was pandoc-2.7.3-macOS.pkg, which is available from the 
page you provided).
Unfortunately that didn't work either - could you/anyone suggest what could 
be preventing the installation here?
Thanks again!
Gaby

On Sunday, June 30, 2019 at 6:37:52 PM UTC+9:30, mb21 wrote:
>
> sounds like your homebrew installation is somehow messed up. but instead, 
> you can also install pandoc from https://pandoc.org/installing.html
>
> On Sunday, June 30, 2019 at 6:57:23 AM UTC+2, Gaby L wrote:
>>
>> Complete beginner here - hope someone can help.
>>
>> I needed to use a function in R called pandoc.table and discovered 
>> RStudio (Version 1.2.1335) did not contain any pandoc packages so I 
>> found some suggestions online and installed pandoc-2.7.3-macOS.pkg.
>> No luck there - so I tried to install pandoc by using this command in the 
>> terminal window
>>
>> brew install pandoc
>>
>> Below is the code towards the end of the installation:
>>
>> [...]
>>
>> ==> Downloading 
>> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
>> ==> Downloading from 
>> https://akamai.bintray.com/bb/bb4246119de8f6f8769d4a7baf3127ed66df0edd69bb84c92b1bdeaa90064caf?__gda__=exp=1561867408~hmac=e393ab0dbfd
>> ######################################################################## 
>> 100.0%
>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>> Warning: Bottle installation failed: building from source.
>> ==> Installing dependencies for pandoc: ghc and cabal-install
>> ==> Installing pandoc dependency: ghc
>> ==> Downloading 
>> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
>> ==> Downloading from 
>> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867415~hmac=e0e537eaad1
>> GL-MBP:~ GL$ brew install pandoc-citeproc
>> ==> Installing dependencies for pandoc-citeproc: pandoc
>> ==> Installing pandoc-citeproc dependency: pandoc
>> ==> Downloading 
>> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
>> Already downloaded: 
>> /Users/GL/Library/Caches/Homebrew/downloads/e5c410b008ebaff5a8464e18ca9a49a0c3cd0aabeafe24e732adf312d2a31f6b--pandoc-2.7.3.mojave.bottle.tar.gz
>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>> Warning: Bottle installation failed: building from source.
>> ==> Installing dependencies for pandoc: ghc and cabal-install
>> ==> Installing pandoc dependency: ghc
>> ==> Downloading 
>> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
>> ==> Downloading from 
>> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867750~hmac=bc2610080cc
>> ######################################################################## 
>> 100.0%
>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>> Warning: Bottle installation failed: building from source.
>> ==> Installing dependencies for ghc: gdbm, openssl, readline, sqlite, xz, 
>> python and sphinx-doc
>> ==> Installing ghc dependency: gdbm
>> ==> Downloading 
>> https://homebrew.bintray.com/bottles/gdbm-1.18.1.mojave.bottle.1.tar.gz
>> ######################################################################## 
>> 100.0%
>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>> Warning: Bottle installation failed: building from source.
>> ==> Downloading https://ftp.gnu.org/gnu/gdbm/gdbm-1.18.1.tar.gz
>> ######################################################################## 
>> 100.0%
>> Error: An exception occurred within a child process:
>>   Errno::EPERM: Operation not permitted @ dir_s_mkdir - /usr/local/Cellar
>> GL-MBP:~ GL$ brew update
>> Already up-to-date.
>>
>> =====================================================================================
>>
>> I am not sure what type of problem I have. I tried to find information 
>> online but couldn't find any helpful posts or documentation.
>>
>> If anyone able to help could kindly spare the time to write back that 
>> would be wonderful.
>>
>> Thanks a million
>> Gaby
>>
>>
>>
>>

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Re: Problems installing Pandoc in MacOS Mojave 10.14.5 using homebrew

[iandol]

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You should run `brew doctor` to see if it can fix your homebrew install 
which is broken. If that doesn't help, completely remove homebrew (check 
what you already have installed first) and install homebrew again from 
scratch. 

Though why the standard Pandoc installer didn't work suggests there is 
*also* a problem with your RStudio — are you sure it has the paths 
correctly set up to see where pandoc is installed?

On Sunday, 30 June 2019 20:51:30 UTC+8, Gaby L wrote:
>
> Hello and thanks for your suggestion
> Before posting on here I had tried the installer in the webpage you 
> suggested too (as I mentioned in my original post, the package for MacOS I 
> tried to install was pandoc-2.7.3-macOS.pkg, which is available from the 
> page you provided).
> Unfortunately that didn't work either - could you/anyone suggest what 
> could be preventing the installation here?
> Thanks again!
> Gaby
>
> On Sunday, June 30, 2019 at 6:37:52 PM UTC+9:30, mb21 wrote:
>>
>> sounds like your homebrew installation is somehow messed up. but instead, 
>> you can also install pandoc from https://pandoc.org/installing.html
>>
>> On Sunday, June 30, 2019 at 6:57:23 AM UTC+2, Gaby L wrote:
>>>
>>> Complete beginner here - hope someone can help.
>>>
>>> I needed to use a function in R called pandoc.table and discovered 
>>> RStudio (Version 1.2.1335) did not contain any pandoc packages so I 
>>> found some suggestions online and installed pandoc-2.7.3-macOS.pkg.
>>> No luck there - so I tried to install pandoc by using this command in 
>>> the terminal window
>>>
>>> brew install pandoc
>>>
>>> Below is the code towards the end of the installation:
>>>
>>> [...]
>>>
>>> ==> Downloading 
>>> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
>>> ==> Downloading from 
>>> https://akamai.bintray.com/bb/bb4246119de8f6f8769d4a7baf3127ed66df0edd69bb84c92b1bdeaa90064caf?__gda__=exp=1561867408~hmac=e393ab0dbfd
>>> ######################################################################## 
>>> 100.0%
>>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>>> Warning: Bottle installation failed: building from source.
>>> ==> Installing dependencies for pandoc: ghc and cabal-install
>>> ==> Installing pandoc dependency: ghc
>>> ==> Downloading 
>>> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
>>> ==> Downloading from 
>>> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867415~hmac=e0e537eaad1
>>> GL-MBP:~ GL$ brew install pandoc-citeproc
>>> ==> Installing dependencies for pandoc-citeproc: pandoc
>>> ==> Installing pandoc-citeproc dependency: pandoc
>>> ==> Downloading 
>>> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz
>>> Already downloaded: 
>>> /Users/GL/Library/Caches/Homebrew/downloads/e5c410b008ebaff5a8464e18ca9a49a0c3cd0aabeafe24e732adf312d2a31f6b--pandoc-2.7.3.mojave.bottle.tar.gz
>>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>>> Warning: Bottle installation failed: building from source.
>>> ==> Installing dependencies for pandoc: ghc and cabal-install
>>> ==> Installing pandoc dependency: ghc
>>> ==> Downloading 
>>> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz
>>> ==> Downloading from 
>>> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=exp=1561867750~hmac=bc2610080cc
>>> ######################################################################## 
>>> 100.0%
>>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>>> Warning: Bottle installation failed: building from source.
>>> ==> Installing dependencies for ghc: gdbm, openssl, readline, sqlite, 
>>> xz, python and sphinx-doc
>>> ==> Installing ghc dependency: gdbm
>>> ==> Downloading 
>>> https://homebrew.bintray.com/bottles/gdbm-1.18.1.mojave.bottle.1.tar.gz
>>> ######################################################################## 
>>> 100.0%
>>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar
>>> Warning: Bottle installation failed: building from source.
>>> ==> Downloading https://ftp.gnu.org/gnu/gdbm/gdbm-1.18.1.tar.gz
>>> ######################################################################## 
>>> 100.0%
>>> Error: An exception occurred within a child process:
>>>   Errno::EPERM: Operation not permitted @ dir_s_mkdir - /usr/local/Cellar
>>> GL-MBP:~ GL$ brew update
>>> Already up-to-date.
>>>
>>> =====================================================================================
>>>
>>> I am not sure what type of problem I have. I tried to find information 
>>> online but couldn't find any helpful posts or documentation.
>>>
>>> If anyone able to help could kindly spare the time to write back that 
>>> would be wonderful.
>>>
>>> Thanks a million
>>> Gaby
>>>
>>>
>>>
>>>

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