From mboxrd@z Thu Jan 1 00:00:00 1970 X-Msuck: nntp://news.gmane.io/gmane.text.pandoc/23070 Path: news.gmane.org!.POSTED.blaine.gmane.org!not-for-mail From: iandol Newsgroups: gmane.text.pandoc Subject: Re: Problems installing Pandoc in MacOS Mojave 10.14.5 using homebrew Date: Sun, 30 Jun 2019 18:15:51 -0700 (PDT) Message-ID: <8357f4bf-bf22-431b-9450-8756f27eae5e@googlegroups.com> References: Reply-To: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="----=_Part_938_769150537.1561943751554" Injection-Info: blaine.gmane.org; posting-host="blaine.gmane.org:195.159.176.226"; logging-data="105212"; mail-complaints-to="usenet@blaine.gmane.org" To: pandoc-discuss Original-X-From: pandoc-discuss+bncBC2PTEMIZYERBSF54XUAKGQEDBL5D4I-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Mon Jul 01 03:15:56 2019 Return-path: Envelope-to: gtp-pandoc-discuss@m.gmane.org Original-Received: from mail-oi1-f188.google.com ([209.85.167.188]) by blaine.gmane.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.89) (envelope-from ) id 1hhkvD-000RFu-1g for gtp-pandoc-discuss@m.gmane.org; Mon, 01 Jul 2019 03:15:55 +0200 Original-Received: by mail-oi1-f188.google.com with SMTP id h67sf4321548oic.0 for ; Sun, 30 Jun 2019 18:15:54 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=googlegroups.com; s=20161025; h=sender:date:from:to:message-id:in-reply-to:references:subject :mime-version:x-original-sender:reply-to:precedence:mailing-list :list-id:list-post:list-help:list-archive:list-subscribe :list-unsubscribe; bh=grcLJLXNzf/mL4GgB4CokOpOE/HF+PDeCvlqocuKz7E=; b=sb843+ULW/YvS8Ppe2OUzkRIHtxncNCBwQWnb6rtVNivCjQwg4Y94q98zF5YI9Ns+Y V+4fLvcG24zLq7w6INAY444BVGtmThJIlaBjyu1beymSaUVZ/AJTmQ3tSccHoyOhirdu Y0bE/PfreYLucjgCnG2zUgWgO8SLIUrr65Y9VEmKGLXV/ieWKpKSy0gzwnctpnD8jpRb yXd17MW0dLhSS5l1zU1lUTnD0vyWQLu0S+e3oIO5ZqyiQkrGuN0VT4F+HZYZekPJYI05 g14Vm17FsHThDFVmvmFlvf8aXZK7bqL4MjzHukjoATetw1NVn8dMWwCbxFxqYyEHjWi6 y7Zg== DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20161025; h=date:from:to:message-id:in-reply-to:references:subject:mime-version :x-original-sender:reply-to:precedence:mailing-list:list-id :list-post:list-help:list-archive:list-subscribe:list-unsubscribe; bh=grcLJLXNzf/mL4GgB4CokOpOE/HF+PDeCvlqocuKz7E=; b=h1G01Zf7RQlOaZvma/NiYE2qMHwAC/dsY8zHJ6ZGlg0+gjly6+b5OEKWQ5B76lSzY0 BeVarTT/REaFNa+mLsr+oKrqynOHgu10Ue4hJ+53PwTs5wbBuj37p6vz2uKPCQ2fRknS KMtUHklmh6IckDK0KQ7lj6rrN/TT7DW6dY2mm+68A49X9p2lZPq+l0SKDimSHieyM+5D guo7XU/mRbiQsIZBOItbUNpkY2jfs0OAshdQqxLccsYTLnmOYij3Ey6PToULR/ziZZJC 5F1uXwPZ82jlCvoqzrBkyRKxDyZXZ/qgJ/cM12AwKCNdjrrrXUsRrLgznWDHnO+IPmxC wmFg== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20161025; h=sender:x-gm-message-state:date:from:to:message-id:in-reply-to :references:subject:mime-version:x-original-sender:reply-to :precedence:mailing-list:list-id:x-spam-checked-in-group:list-post :list-help:list-archive:list-subscribe:list-unsubscribe; bh=grcLJLXNzf/mL4GgB4CokOpOE/HF+PDeCvlqocuKz7E=; b=BoSbrGvSgmew1oVJCR+08J6hlS/FXhx/DVvQzinRct3FRQzQcF2D3S19XI0KuzqbSV 2E/p3FN7jOoQA+pXe9bpTaMBFg9hd/ETNoNzWEFXoML0phPSppucmoKjWb6wKjLOpwRh 9oycvvK/gNOXwOtbMGH1PZFpmGhGA2D896/9o0r63erJhqDi51Hh+4qhLV0kS0u5Le5s yUZejJHgGl9QXdFSrdZcP/23LN7oMn+e6ZZmwg+JKf+m1LRPEC8M1BFccRMiqgIYZK6p xNn4GcZx1sGK2LfNlIQDWCFJ6gIDDomx9pZ5RHjlAQdTf/urjsGgst/EN1vHTUaDvMmK X4Ag== Original-Sender: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org X-Gm-Message-State: APjAAAWsWNR1yOFA3015ReelpYWbxIdJCcYnlxU8126s0PfgfBNwUKkp 5aMVJHzKCSrk4QIdwzihYG4= X-Google-Smtp-Source: APXvYqxybbFqQ+qMIyqZOcLkcn5M7gfmvgl32Sy1FjeZg5zLIaQlLFrQ4pyA7jABdlBrF/uKW5J4WQ== X-Received: by 2002:a9d:67d6:: with SMTP id c22mr18675539otn.327.1561943753373; Sun, 30 Jun 2019 18:15:53 -0700 (PDT) X-BeenThere: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Original-Received: by 2002:a9d:3db7:: with SMTP id l52ls93121otc.15.gmail; Sun, 30 Jun 2019 18:15:52 -0700 (PDT) X-Received: by 2002:a05:6830:119:: with SMTP id i25mr18306169otp.288.1561943752327; Sun, 30 Jun 2019 18:15:52 -0700 (PDT) In-Reply-To: X-Original-Sender: iandol-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org Precedence: list Mailing-list: list pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org; contact pandoc-discuss+owners-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org List-ID: X-Google-Group-Id: 1007024079513 List-Post: , List-Help: , List-Archive: , List-Unsubscribe: , Xref: news.gmane.org gmane.text.pandoc:23070 Archived-At: ------=_Part_938_769150537.1561943751554 Content-Type: multipart/alternative; boundary="----=_Part_939_1201156373.1561943751555" ------=_Part_939_1201156373.1561943751555 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable You should run `brew doctor` to see if it can fix your homebrew install=20 which is broken. If that doesn't help, completely remove homebrew (check=20 what you already have installed first) and install homebrew again from=20 scratch.=20 Though why the standard Pandoc installer didn't work suggests there is=20 *also* a problem with your RStudio =E2=80=94 are you sure it has the paths= =20 correctly set up to see where pandoc is installed? On Sunday, 30 June 2019 20:51:30 UTC+8, Gaby L wrote: > > Hello and thanks for your suggestion > Before posting on here I had tried the installer in the webpage you=20 > suggested too (as I mentioned in my original post, the package for MacOS = I=20 > tried to install was pandoc-2.7.3-macOS.pkg, which is available from the= =20 > page you provided). > Unfortunately that didn't work either - could you/anyone suggest what=20 > could be preventing the installation here? > Thanks again! > Gaby > > On Sunday, June 30, 2019 at 6:37:52 PM UTC+9:30, mb21 wrote: >> >> sounds like your homebrew installation is somehow messed up. but instead= ,=20 >> you can also install pandoc from https://pandoc.org/installing.html >> >> On Sunday, June 30, 2019 at 6:57:23 AM UTC+2, Gaby L wrote: >>> >>> Complete beginner here - hope someone can help. >>> >>> I needed to use a function in R called pandoc.table and discovered=20 >>> RStudio (Version 1.2.1335) did not contain any pandoc packages so I=20 >>> found some suggestions online and installed pandoc-2.7.3-macOS.pkg. >>> No luck there - so I tried to install pandoc by using this command in= =20 >>> the terminal window >>> >>> brew install pandoc >>> >>> Below is the code towards the end of the installation: >>> >>> [...] >>> >>> =3D=3D> Downloading=20 >>> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz >>> =3D=3D> Downloading from=20 >>> https://akamai.bintray.com/bb/bb4246119de8f6f8769d4a7baf3127ed66df0edd6= 9bb84c92b1bdeaa90064caf?__gda__=3Dexp=3D1561867408~hmac=3De393ab0dbfd >>> #######################################################################= #=20 >>> 100.0% >>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar >>> Warning: Bottle installation failed: building from source. >>> =3D=3D> Installing dependencies for pandoc: ghc and cabal-install >>> =3D=3D> Installing pandoc dependency: ghc >>> =3D=3D> Downloading=20 >>> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz >>> =3D=3D> Downloading from=20 >>> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e= 0e2d9bd92727c5a0b7734d5?__gda__=3Dexp=3D1561867415~hmac=3De0e537eaad1 >>> GL-MBP:~ GL$ brew install pandoc-citeproc >>> =3D=3D> Installing dependencies for pandoc-citeproc: pandoc >>> =3D=3D> Installing pandoc-citeproc dependency: pandoc >>> =3D=3D> Downloading=20 >>> https://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.gz >>> Already downloaded:=20 >>> /Users/GL/Library/Caches/Homebrew/downloads/e5c410b008ebaff5a8464e18ca9= a49a0c3cd0aabeafe24e732adf312d2a31f6b--pandoc-2.7.3.mojave.bottle.tar.gz >>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar >>> Warning: Bottle installation failed: building from source. >>> =3D=3D> Installing dependencies for pandoc: ghc and cabal-install >>> =3D=3D> Installing pandoc dependency: ghc >>> =3D=3D> Downloading=20 >>> https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bottle.tar.gz >>> =3D=3D> Downloading from=20 >>> https://akamai.bintray.com/ab/ab7cfe45159057538fcde888c14ccf19b0154ac6e= 0e2d9bd92727c5a0b7734d5?__gda__=3Dexp=3D1561867750~hmac=3Dbc2610080cc >>> #######################################################################= #=20 >>> 100.0% >>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar >>> Warning: Bottle installation failed: building from source. >>> =3D=3D> Installing dependencies for ghc: gdbm, openssl, readline, sqlit= e,=20 >>> xz, python and sphinx-doc >>> =3D=3D> Installing ghc dependency: gdbm >>> =3D=3D> Downloading=20 >>> https://homebrew.bintray.com/bottles/gdbm-1.18.1.mojave.bottle.1.tar.gz >>> #######################################################################= #=20 >>> 100.0% >>> Error: No such file or directory @ dir_chdir - /usr/local/Cellar >>> Warning: Bottle installation failed: building from source. >>> =3D=3D> Downloading https://ftp.gnu.org/gnu/gdbm/gdbm-1.18.1.tar.gz >>> #######################################################################= #=20 >>> 100.0% >>> Error: An exception occurred within a child process: >>> Errno::EPERM: Operation not permitted @ dir_s_mkdir - /usr/local/Cell= ar >>> GL-MBP:~ GL$ brew update >>> Already up-to-date. >>> >>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D >>> >>> I am not sure what type of problem I have. I tried to find information= =20 >>> online but couldn't find any helpful posts or documentation. >>> >>> If anyone able to help could kindly spare the time to write back that= =20 >>> would be wonderful. >>> >>> Thanks a million >>> Gaby >>> >>> >>> >>> --=20 You received this message because you are subscribed to the Google Groups "= pandoc-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an e= mail to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To post to this group, send email to pandoc-discuss-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To view this discussion on the web visit https://groups.google.com/d/msgid/= pandoc-discuss/8357f4bf-bf22-431b-9450-8756f27eae5e%40googlegroups.com. For more options, visit https://groups.google.com/d/optout. ------=_Part_939_1201156373.1561943751555 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
You should run `brew doctor` to see if it can fix your hom= ebrew install which is broken. If that doesn't help, completely remove = homebrew (check what you already have installed first) and install homebrew= again from scratch.=C2=A0

Though why the standard Pando= c installer didn't work suggests there is also a problem with yo= ur RStudio =E2=80=94 are you sure it has the paths correctly set up to see = where pandoc is installed?

On Sunday, 30 June 2019 20:51:30 UTC+8, G= aby L wrote:
=
Hello and thanks for your suggestion
Before posting on here I had tried the installer in the w= ebpage you suggested too (as I mentioned in my original post, the package f= or MacOS I tried to install was pandoc-2.7.3-macOS.pkg, which is available from the page you provi= ded).
Unfortunately that didn't work either - could y= ou/anyone suggest what could be preventing the installation here?
Thanks again!
Gaby

On= Sunday, June 30, 2019 at 6:37:52 PM UTC+9:30, mb21 wrote:
sounds like your homebrew installat= ion is somehow messed up. but instead, you can also install pandoc from=C2= =A0https://pandoc.org/installing.html

O= n Sunday, June 30, 2019 at 6:57:23 AM UTC+2, Gaby L wrote:
Complete beginner here - hope some= one can help.

I needed to use a fu= nction in R called pandoc.table and discovered RStudio (Version=C2=A01.2.1335) did not contain any pandoc packages= so I found some suggestions online and installed pandoc-2.7.3-macOS.pkg.
No luck there - so I tried to install pandoc by using this= command in the terminal window

<= div>br= ew install pandoc

Below is th= e code towards the end of the installation:

[...]

=3D=3D> Downloading from https://akamai.bintray.com/bb/bb4246119de8= f6f8769d4a7baf3127ed66df0edd69bb84c92b1bdeaa90064caf?__gda__=3Dex= p=3D1561867408~hmac=3De393ab0dbfd
#############################= ########################################### 100.0%
Error: No such file or directory @ dir_chdir - /u= sr/local/Cellar
Warning: Bot= tle installation failed: building from source.
=3D=3D> Install= ing dependencies for pandoc: ghc and cabal-install
=3D=3D> Installing= pandoc dependency: ghc
=3D=3D> Downloading https://homebrew.bintray.com/bottles/ghc-8.6.5.mo= jave.bottle.tar.gz
=3D=3D> Downloading from https://akamai.bintray.com/ab/ab7cfe451590= 57538fcde888c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=3Dex= p=3D1561867415~hmac=3De0e537eaad1
GL-MBP:~ GL$ brew install pan= doc-citeproc
=3D=3D> Installing dependencies for pandoc-citeproc: pan= doc
=3D=3D> Installing pandoc-citeproc dependency: pandoc
=3D=3D&g= t; Downloading htt= ps://homebrew.bintray.com/bottles/pandoc-2.7.3.mojave.bottle.tar.= gz
Already downloaded: /Users/GL/Library/Caches/Homebrew/downlo= ads/e5c410b008ebaff5a8464e18ca9a49a0c3cd0aabeafe24e732adf312d2a3<= wbr>1f6b--pandoc-2.7.3.mojave.bottle.tar.gz
Error: No such file or directory @ dir_chdir - /usr/local/Cel= lar
Warning: Bottle installa= tion failed: building from source.
=3D=3D> Installing dependen= cies for pandoc: ghc and cabal-install
=3D=3D> Installing pandoc depe= ndency: ghc
=3D=3D> Downloading https://homebrew.bintray.com/bottles/ghc-8.6.5.mojave.bo= ttle.tar.gz
=3D=3D> Downloading from https://akamai.bintray.com/ab/ab7cfe45159057538fcde8= 88c14ccf19b0154ac6e0e2d9bd92727c5a0b7734d5?__gda__=3Dexp=3D156186= 7750~hmac=3Dbc2610080cc
##################################= ###################################### 100.0%
Error: No such file or directory @ dir_chdir - /usr/local/C= ellar
Warning: Bottle instal= lation failed: building from source.
=3D=3D> Installing depend= encies for ghc: gdbm, openssl, readline, sqlite, xz, python and sphinx-doc<= br>=3D=3D> Installing ghc dependency: gdbm
=3D=3D> Downloading https://homebrew.bin= tray.com/bottles/gdbm-1.18.1.mojave.bottle.1.tar.gz
######= #################################################################= # 100.0%
Error: No such file or dir= ectory @ dir_chdir - /usr/local/Cellar
Warning: Bottle installation failed: building from source.
=3D=3D> Downloading https://ftp.gnu.org/gnu/gdbm/gdbm-1.18.1.tar.gz<= br>##############################################################= ########## 100.0%
Error: An excepti= on occurred within a child process:
=C2=A0 Errno::EPERM: Operation not p= ermitted @ dir_s_mkdir - /usr/local/Cellar
GL-MBP:~ GL$ brew upda= te
Already up-to-date.
=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D

<= div>I = am not sure what type of problem I have. I tried to find information online= but couldn't find any helpful posts or documentation.
If anyone able to help could kindly spare the time= to write back that would be wonderful.

Thanks a million
Gaby
=


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