I have attached three files<div><br /></div><div>First.md</div><div>First.HTML</div><div>Updated.md</div><div><br /></div><div>I wrote First.Md</div><div>it looks like this:</div><div><br /></div><div>Test my reference<br />[Dermamed]<br />[yahoo]<br />[MultiMarkdown]<br />[MarkDown]<br /><br />This is a [Link](www.usatoday) where the url is directly next to the word link in markdown<br /><br />&lt;!-- Citations --&gt;<br />[Dermamed]:      https://www.dermamedsolutions.com<br />[yahoo]: https://www.yahoo.com<br />[MultiMarkdown]: https://fletcherpenney.net/multimarkdown/<br />[Markdown]:   https://daringfireball.net/projects/markdown/</div><div><br /></div><div><br /></div><div>What I am doing is keeping the URL citations at the bottom to keep the text clean looking. Sometimes I have some pretty long URLs</div><div><br /></div><div>In Pandoc I used the command</div><div>'pandoc -s "First.md" -o First.html</div><div><br /></div><div>The HTML comes out as expected</div><div>Then I used the Pandoc command</div><div>'pandoc -s First.html -o updated.md</div><div><br /></div><div>When you look at the new updated.md file. You will see that all links are on the same line as the text (rather than at the bottom). I was looking for a command to create all these links at the bottom rather than inline. Is there a way to do that?</div><div><br /></div>

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