TexShop produces a great pdf, but pandoc has trouble with matrix converting to epub

[Marc Grober <marc.grober-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>]

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 I am running   
pandoc Matrices.tex -o matrices.epub -f latex -t epub3

This produces the expected pdf with the following lines:
\makeatletter
\renewcommand*\env@matrix[1][*\c@MaxMatrixCols c]{\hskip -\arraycolsep \let\
@ifnextchar\new@ifnextchar \array{#1}}
\makeatother 
$$\begin{bmatrix}[rrr|r] 1 & 0 & 0 & \frac{78}{29} \\ 0 & 1 & 0 & \frac{64}{
87} \\ 0 & 0 & 1 & -\frac{10}{29} \end{bmatrix}$$


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but not the epub using Azardi, calibre or ibooks

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I understand this is not a Latex group, but the tex seems to be working 
just fine...

or is this one of those tex flavor gotchas, where pandoc has trouble with 
the particular tex used?

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