From the information given, I think that the AST must still contain a fig:fig1 citation after your filter has run. Are you able to share your filter? On Wed, 29 Nov 2023 at 13:28, 'Thomas J.' via pandoc-discuss < pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> wrote: > Hi everyone, > > Since pandoc-fignos isn't working anymore (at least, with my Pandoc > version), I have written a Lua filter that basically does what fignos does, > namely replacing tags such as @fig:fig1 with anchors/refs to the figures in > html/latex. Now, if I am trying to use this filter without citeproc, > everthing works as expected. The moment I use --citeproc, I get the error > message "fig:fig1 citation not found" and I have no link in my output file. > I am actually calling the lua filter BEFORE --citeproc in the command > line... > > pandoc --lua-filter=filter/pandoc-figref.lua --citeproc --number-sections > --from markdown --template=templates/phimisci-1-5.html --bibliography= > $BIBLIOGRAPHY --csl=csl/apa7-single-spaced.csl yaml/gen-metadata.yaml > article/$1 article/$2 -o $HTMLFILE > > What am I missing? Thanks for the help! > > Best wishes, > Thomas > > -- > You received this message because you are subscribed to the Google Groups > "pandoc-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org > To view this discussion on the web visit > https://groups.google.com/d/msgid/pandoc-discuss/15e09292-83a1-4e28-ba84-d0c518be709dn%40googlegroups.com > > . > -- You received this message because you are subscribed to the Google Groups "pandoc-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an email to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To view this discussion on the web visit https://groups.google.com/d/msgid/pandoc-discuss/CAEe_xxid8YRTLJKC%3D8jvD2ps4a7YoQe%3DZS3DMMt0VJ3d0e-04Q%40mail.gmail.com.