On Tue, May 5, 2020 at 10:09 PM Gu Lu <guill.louvel-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org> wrote:

> This is because you are mixing footnotes and citations. *@deustachio_2003*
> is a text citation: it will be expanded into e.g. "(Deustachio 2003)" or
> "[1]" depending on your citation style. It is equivalent to the latex
> *\cite{deustachio_2003}* command. This is not to be confused with items
> in the bibliography. The bibliography will automatically be created at the
> end of the document, so no need to make it yourself using footnotes.
>


Thanks for the hint Gu. Some further searching turned up the
suppress-bibliography option in pandoc so running the same command as
before but with an additional parameter of --metadata=suppress-bibliography
got me the output I was looking for:

Here is one reference citing the Reactome Project.[^1]

[^1]: P Deustachio, “Pentose Phosphate Pathway,” *Reactome - a Curated
    Knowledgebase of Biological Pathways* 5 (March 2003),
    <https://doi.org/10.3180/react_1859.1>

--
Balaji

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