From mboxrd@z Thu Jan 1 00:00:00 1970 X-Msuck: nntp://news.gmane.io/gmane.text.pandoc/29867 Path: news.gmane.io!.POSTED.blaine.gmane.org!not-for-mail From: =?UTF-8?Q?S=C3=A9bastien_Boisg=C3=A9rault?= Newsgroups: gmane.text.pandoc Subject: Re: Images in Jupyter Notebook to Markdown conversion Date: Wed, 29 Dec 2021 20:52:36 +0100 Message-ID: References: <6d84aa5d-bdc8-4612-b471-c7b270f3936an@googlegroups.com> Reply-To: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="000000000000438e0c05d44e4859" Injection-Info: ciao.gmane.io; posting-host="blaine.gmane.org:116.202.254.214"; logging-data="23465"; mail-complaints-to="usenet@ciao.gmane.io" Cc: pandoc-discuss To: John MacFarlane Original-X-From: pandoc-discuss+bncBCIOBSUCXMMRBEPZWKHAMGQES6EQI5Q-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Wed Dec 29 20:52:52 2021 Return-path: Envelope-to: gtp-pandoc-discuss@m.gmane-mx.org Original-Received: from mail-qv1-f59.google.com ([209.85.219.59]) by ciao.gmane.io with esmtps (TLS1.3:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.92) (envelope-from ) id 1n2f0G-0005wo-Az for gtp-pandoc-discuss@m.gmane-mx.org; 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[2607:f8b0:4864:20::633]) by gmr-mx.google.com with ESMTPS id l20si2700883qtk.2.2021.12.29.11.52.49 for (version=TLS1_3 cipher=TLS_AES_128_GCM_SHA256 bits=128/128); Wed, 29 Dec 2021 11:52:49 -0800 (PST) Received-SPF: pass (google.com: domain of sebastien.boisgerault-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org designates 2607:f8b0:4864:20::633 as permitted sender) client-ip=2607:f8b0:4864:20::633; Original-Received: by mail-pl1-x633.google.com with SMTP id n16so16552155plc.2 for ; Wed, 29 Dec 2021 11:52:49 -0800 (PST) X-Received: by 2002:a17:902:9a8d:b0:149:2033:8812 with SMTP id w13-20020a1709029a8d00b0014920338812mr26922721plp.76.1640807568476; Wed, 29 Dec 2021 11:52:48 -0800 (PST) In-Reply-To: X-Original-Sender: Sebastien.Boisgerault-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org X-Original-Authentication-Results: gmr-mx.google.com; dkim=pass header.i=@gmail.com header.s=20210112 header.b=kIYwYLRS; spf=pass (google.com: domain of sebastien.boisgerault-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org designates 2607:f8b0:4864:20::633 as permitted sender) smtp.mailfrom=sebastien.boisgerault-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org; dmarc=pass (p=NONE sp=QUARANTINE dis=NONE) header.from=gmail.com Precedence: list Mailing-list: list pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org; contact pandoc-discuss+owners-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org List-ID: X-Google-Group-Id: 1007024079513 List-Post: , List-Help: , List-Archive: , List-Unsubscribe: , Xref: news.gmane.io gmane.text.pandoc:29867 Archived-At: --000000000000438e0c05d44e4859 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable On Wed, Dec 29, 2021 at 8:28 PM John MacFarlane wrote: > > See the --extract-media option in the manual. > Thank you ! =F0=9F=91=8D > > > S=C3=A9bastien Boisg=C3=A9rault writes: > > > Hello everyone, > > > > When i convert the images.ipynb notebook to markdown, the resuting > document > > contains > > > > ::: {.output .execute_result execution_count=3D"4"} > > ![](fcbe61351f965c3664d65d5e93991915402e0483.png) > > ::: > > > > but AFAICT, the png file is not generated. Using the standalone option > does > > not change anything. And of course, the round-tripping (md -> ipynb) > fails > > with: > > > > File fcbe61351f965c3664d65d5e93991915402e0483.png not found in resource > path > > > > The original notebook can be visualized here: > > > https://github.com/boisgera/python-advanced-eval/blob/master/samples/imag= es.ipynb. > > > The (Grace Hopper) image it contains is an image/png cell output > > (Matplotlib is used to display the image) : > > > > { > > "cell_type": "code", > > "execution_count": 4, > > "metadata": {}, > > "outputs": [ > > { > > "data": { > > "image/png": > > > "iVBORw0KGgoAAAANSUhEUgAAAgAAAAJYCAIAAACbx8k3AAEAAElEQVR4nGT92dMsWZIfhrn7= 2SIil2+/S9Xtqq7qbboxPSswwGAAGQwkRYEyQgYZARIvMiNIo0wveseDTGaCXkTqX+CLKJO4CRI= IgaSGAIfAAAPMYLqnZ+nprurat7t+Wy4RcTZ3PXhGVPYgH67lzS8z4sRZfPn5z93x6tG/7X3jXU= A0tWApAgAGbd/vlst > > > ... > > > > I am using pandoc 2.16.2 (Linux). Is it considered a bug or am I missin= g > > something? Shall I file an issue? > > > > Regards, > > > > S=C3=A9bastien > > > > > > -- > > You received this message because you are subscribed to the Google > Groups "pandoc-discuss" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org > > To view this discussion on the web visit > https://groups.google.com/d/msgid/pandoc-discuss/6d84aa5d-bdc8-4612-b471-= c7b270f3936an%40googlegroups.com > . > > --- > > jupyter: > > nbformat: 4 > > nbformat_minor: 2 > > --- > > > > ::: {.cell .code execution_count=3D"1"} > > ``` python > > import matplotlib.pyplot as plt > > from matplotlib.cbook import get_sample_data > > ``` > > ::: > > > > ::: {.cell .code execution_count=3D"2"} > > ``` python > > with get_sample_data("grace_hopper.jpg") as file: > > image_array =3D plt.imread(file) > > ``` > > ::: > > > > ::: {.cell .code execution_count=3D"3"} > > ``` python > > image_array > > ``` > > > > ::: {.output .execute_result execution_count=3D"3"} > > array([[[ 21, 24, 77], > > [ 27, 30, 85], > > [ 33, 35, 92], > > ..., > > [ 76, 114, 189], > > [ 71, 109, 184], > > [ 76, 114, 189]], > > > > [[ 26, 29, 82], > > [ 25, 28, 83], > > [ 27, 29, 86], > > ..., > > [ 60, 98, 173], > > [ 56, 94, 169], > > [ 62, 100, 175]], > > > > [[ 21, 24, 77], > > [ 20, 23, 78], > > [ 20, 22, 79], > > ..., > > [ 79, 117, 190], > > [ 80, 118, 191], > > [ 88, 126, 199]], > > > > ..., > > > > [[153, 13, 24], > > [163, 18, 31], > > [164, 18, 29], > > ..., > > [ 14, 13, 19], > > [ 13, 12, 18], > > [ 11, 10, 16]], > > > > [[149, 12, 22], > > [156, 14, 26], > > [160, 16, 26], > > ..., > > [ 13, 12, 18], > > [ 13, 12, 18], > > [ 12, 11, 17]], > > > > [[150, 12, 25], > > [154, 14, 25], > > [157, 16, 25], > > ..., > > [ 14, 13, 19], > > [ 14, 13, 19], > > [ 14, 13, 19]]], dtype=3Duint8) > > ::: > > ::: > > > > ::: {.cell .code execution_count=3D"4"} > > ``` python > > plt.imshow(image_array) > > plt.show() > > ``` > > > > ::: {.output .execute_result execution_count=3D"4"} > > ![](fcbe61351f965c3664d65d5e93991915402e0483.png) > > ::: > > ::: > --=20 You received this message because you are subscribed to the Google Groups "= pandoc-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an e= mail to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To view this discussion on the web visit https://groups.google.com/d/msgid/= pandoc-discuss/CAKYpyK51vsg1KeTGUqWJeUP-Nx8TqvqGHh3uMoMDmw1tmijZrA%40mail.g= mail.com. --000000000000438e0c05d44e4859 Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable


=
On Wed, Dec 29, 2021 at 8:28 PM John = MacFarlane <jgm-TVLZxgkOlNX2fBVCVOL8/A@public.gmane.org>= wrote:

See the --extract-media option in the manual.

Thank you ! =F0=9F=91=8D
=C2= =A0


S=C3=A9bastien Boisg=C3=A9rault <sebastien.boisgerault-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org> write= s:

> Hello everyone,
>
> When i convert the images.ipynb notebook to markdown, the resuting doc= ument
> contains
>
> ::: {.output .execute_result execution_count=3D"4"}
> ![](fcbe61351f965c3664d65d5e93991915402e0483.png)
> :::
>
> but AFAICT, the png file is not generated. Using the standalone option= does
> not change anything. And of course, the round-tripping (md -> ipynb= ) fails
> with:
>
> File fcbe61351f965c3664d65d5e93991915402e0483.png not found in resourc= e path
>
> The original notebook can be visualized here:
> https://github= .com/boisgera/python-advanced-eval/blob/master/samples/images.ipynb. > The (Grace Hopper) image it contains is an image/png cell output
> (Matplotlib is used to display the image) :
>
>=C2=A0 =C2=A0{
>=C2=A0 =C2=A0 "cell_type": "code",
>=C2=A0 =C2=A0 "execution_count": 4,
>=C2=A0 =C2=A0 "metadata": {},
>=C2=A0 =C2=A0 "outputs": [
>=C2=A0 =C2=A0 =C2=A0{
>=C2=A0 =C2=A0 =C2=A0 "data": {
>=C2=A0 =C2=A0 =C2=A0 =C2=A0"image/png":
> "iVBORw0KGgoAAAANSUhEUgAAAgAAAAJYCAIAAACbx8k3AAEAAElEQVR4nGT92dMs= WZIfhrn72SIil2+/S9Xtqq7qbboxPSswwGAAGQwkRYEyQgYZARIvMiNIo0wveseDTGaCXkTqX+C= LKJO4CRIIgaSGAIfAAAPMYLqnZ+nprurat7t+Wy4RcTZ3PXhGVPYgH67lzS8z4sRZfPn5z93x6t= G/7X3jXUA0tWApAgAGbd/vlst
> ...
>
> I am using pandoc 2.16.2 (Linux). Is it considered a bug or am I missi= ng
> something? Shall I file an issue?
>
> Regards,
>
> S=C3=A9bastien
>
>
> --
> You received this message because you are subscribed to the Google Gro= ups "pandoc-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send= an email to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org.
> To view this discussion on the web visit https://groups.google.co= m/d/msgid/pandoc-discuss/6d84aa5d-bdc8-4612-b471-c7b270f3936an%40googlegrou= ps.com.
> ---
> jupyter:
>=C2=A0 =C2=A0nbformat: 4
>=C2=A0 =C2=A0nbformat_minor: 2
> ---
>
> ::: {.cell .code execution_count=3D"1"}
> ``` python
> import matplotlib.pyplot as plt
> from matplotlib.cbook import get_sample_data
> ```
> :::
>
> ::: {.cell .code execution_count=3D"2"}
> ``` python
> with get_sample_data("grace_hopper.jpg") as file:
>=C2=A0 =C2=A0 =C2=A0image_array =3D plt.imread(file)
> ```
> :::
>
> ::: {.cell .code execution_count=3D"3"}
> ``` python
> image_array
> ```
>
> ::: {.output .execute_result execution_count=3D"3"}
>=C2=A0 =C2=A0 =C2=A0array([[[ 21,=C2=A0 24,=C2=A0 77],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 27,=C2=A0 30,=C2=A0 8= 5],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 33,=C2=A0 35,=C2=A0 9= 2],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0...,
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 76, 114, 189],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 71, 109, 184],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 76, 114, 189]],
>
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 [[ 26,=C2=A0 29,=C2=A0 82], >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 25,=C2=A0 28,=C2=A0 8= 3],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 27,=C2=A0 29,=C2=A0 8= 6],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0...,
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 60,=C2=A0 98, 173], >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 56,=C2=A0 94, 169], >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 62, 100, 175]],
>
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 [[ 21,=C2=A0 24,=C2=A0 77], >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 20,=C2=A0 23,=C2=A0 7= 8],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 20,=C2=A0 22,=C2=A0 7= 9],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0...,
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 79, 117, 190],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 80, 118, 191],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 88, 126, 199]],
>
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 ...,
>
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 [[153,=C2=A0 13,=C2=A0 24], >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[163,=C2=A0 18,=C2=A0 3= 1],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[164,=C2=A0 18,=C2=A0 2= 9],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0...,
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 14,=C2=A0 13,=C2=A0 1= 9],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 13,=C2=A0 12,=C2=A0 1= 8],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 11,=C2=A0 10,=C2=A0 1= 6]],
>
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 [[149,=C2=A0 12,=C2=A0 22], >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[156,=C2=A0 14,=C2=A0 2= 6],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[160,=C2=A0 16,=C2=A0 2= 6],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0...,
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 13,=C2=A0 12,=C2=A0 1= 8],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 13,=C2=A0 12,=C2=A0 1= 8],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 12,=C2=A0 11,=C2=A0 1= 7]],
>
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 [[150,=C2=A0 12,=C2=A0 25], >=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[154,=C2=A0 14,=C2=A0 2= 5],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[157,=C2=A0 16,=C2=A0 2= 5],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0...,
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 14,=C2=A0 13,=C2=A0 1= 9],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 14,=C2=A0 13,=C2=A0 1= 9],
>=C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0 =C2=A0[ 14,=C2=A0 13,=C2=A0 1= 9]]], dtype=3Duint8)
> :::
> :::
>
> ::: {.cell .code execution_count=3D"4"}
> ``` python
> plt.imshow(image_array)
> plt.show()
> ```
>
> ::: {.output .execute_result execution_count=3D"4"}
> ![](fcbe61351f965c3664d65d5e93991915402e0483.png)
> :::
> :::

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