After some playing around with it, I believe it has to do with my use of the ox-extra package notignore-headlines. If I don't put a :notignore: tag on the headline below a paragraph with a footnote, I need two blank lines below the paragraph if I want the footnotes to go in the footnotes section at the bottom of the document. If I have less than two blank lines below the paragraph, then the next paragraph ends up in the footnote.

On Tue, 9 Oct 2018 at 19:17, Albert Krewinkel <albert+pandoc-9EawChwDxG8hFhg+JK9F0w@public.gmane.org> wrote:

I checked with ox-pandoc and cannot reproduce the issue there either.
Could you post a minimal example which demonstrates the problem?

Dan writes:

> I think so. It works using Elias's "intermediate solution". This might be
> an issue with ox-pandoc (which I am using) rather than pandoc itself - but
> since I saw this issue posted here I assumed it had the same source.
>
> Dan
>
> On Friday, 5 October 2018 17:41:46 UTC+1, Albert Krewinkel wrote:
>>
>> Works for me. Are you using the latest pandoc version?

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