Assistance with pandoc-jats

Assistance with pandoc-jats

[schneider.922-ZbGKxL/pcrQ]

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All,

I'm new to pandoc, and honestly, don't understand much beyond the commands 
I'm supposed to use. I'm trying to use pandoc to convert Microsoft Word 
files to Markdown, and then use Martin Fenner's pandoc-jats to convert the 
Markdown files to JATS XML. I've been able to convert Word documents to 
Markdown, but every time I try to convert the Markdown file to JATS I get 
some variation of the following error message: 

WARNING: Undefined function 'SoftBreak'
pandoc: user error (Incorrect result type (string expected, got nil))

Sometimes I get the 'WARNING' line, sometimes I don't, sometimes I get it 
50 times before I get the pandoc line.I've tried various files from various 
sources. I don't know what I'm doing wrong, and I haven't found a 
satisfactory answer anywhere, so I'm hoping someone here can help me. If 
there's more information you need, please let me know and I'll provide it.

Thanks in advance!

Ingrid

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Re: Assistance with pandoc-jats

[John MACFARLANE]

The custom writer needs to be updated to handle the
SoftBreak element, which was added in recent versions of pandoc.
You should write to Martin Fenner about this.

+++ schneider.922-ZbGKxL/pcrQ@public.gmane.org [Mar 29 16 13:02 ]:
>   All,
>   I'm new to pandoc, and honestly, don't understand much beyond the
>   commands I'm supposed to use. I'm trying to use pandoc to convert
>   Microsoft Word files to Markdown, and then use Martin Fenner's
>   pandoc-jats to convert the Markdown files to JATS XML. I've been able
>   to convert Word documents to Markdown, but every time I try to convert
>   the Markdown file to JATS I get some variation of the following error
>   message:
>   WARNING: Undefined function 'SoftBreak'
>   pandoc: user error (Incorrect result type (string expected, got nil))
>   Sometimes I get the 'WARNING' line, sometimes I don't, sometimes I get
>   it 50 times before I get the pandoc line.I've tried various files from
>   various sources. I don't know what I'm doing wrong, and I haven't found
>   a satisfactory answer anywhere, so I'm hoping someone here can help me.
>   If there's more information you need, please let me know and I'll
>   provide it.
>   Thanks in advance!
>   Ingrid
>
>   --
>   You received this message because you are subscribed to the Google
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>   ab77-cf75eea82d3d%40googlegroups.com.
>   For more options, visit [4]https://groups.google.com/d/optout.
>
>References
>
>   1. mailto:pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org
>   2. mailto:pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org
>   3. https://groups.google.com/d/msgid/pandoc-discuss/7806a6af-cdf1-4bd5-ab77-cf75eea82d3d-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org?utm_medium=email&utm_source=footer
>   4. https://groups.google.com/d/optout

Re: Assistance with pandoc-jats

[Martin Fenner]

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Ingrid,

I will update pandoc-jats. 

Best,

Martin

On Wednesday, March 30, 2016 at 2:24:54 AM UTC+2, John MacFarlane wrote:
>
> The custom writer needs to be updated to handle the 
> SoftBreak element, which was added in recent versions of pandoc. 
> You should write to Martin Fenner about this. 
>
> +++ schnei...-ZbGKxL/pcrQ@public.gmane.org <javascript:> [Mar 29 16 13:02 ]: 
> >   All, 
> >   I'm new to pandoc, and honestly, don't understand much beyond the 
> >   commands I'm supposed to use. I'm trying to use pandoc to convert 
> >   Microsoft Word files to Markdown, and then use Martin Fenner's 
> >   pandoc-jats to convert the Markdown files to JATS XML. I've been able 
> >   to convert Word documents to Markdown, but every time I try to convert 
> >   the Markdown file to JATS I get some variation of the following error 
> >   message: 
> >   WARNING: Undefined function 'SoftBreak' 
> >   pandoc: user error (Incorrect result type (string expected, got nil)) 
> >   Sometimes I get the 'WARNING' line, sometimes I don't, sometimes I get 
> >   it 50 times before I get the pandoc line.I've tried various files from 
> >   various sources. I don't know what I'm doing wrong, and I haven't 
> found 
> >   a satisfactory answer anywhere, so I'm hoping someone here can help 
> me. 
> >   If there's more information you need, please let me know and I'll 
> >   provide it. 
> >   Thanks in advance! 
> >   Ingrid 
> > 
> >   -- 
> >   You received this message because you are subscribed to the Google 
> >   Groups "pandoc-discuss" group. 
> >   To unsubscribe from this group and stop receiving emails from it, send 
> >   an email to [1]pandoc-discus...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:>. 
> >   To post to this group, send email to 
> >   [2]pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:>. 
> >   To view this discussion on the web visit 
> >   [3]
> https://groups.google.com/d/msgid/pandoc-discuss/7806a6af-cdf1-4bd5- 
> >   ab77-cf75eea82d3d%40googlegroups.com. 
> >   For more options, visit [4]https://groups.google.com/d/optout. 
> > 
> >References 
> > 
> >   1. mailto:pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:> 
> >   2. mailto:pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:> 
> >   3. 
> https://groups.google.com/d/msgid/pandoc-discuss/7806a6af-cdf1-4bd5-ab77-cf75eea82d3d-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org?utm_medium=email&utm_source=footer 
> >   4. https://groups.google.com/d/optout 
>
>

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Re: Assistance with pandoc-jats

[schneider.922-ZbGKxL/pcrQ]

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Thank you so much!

Ingrid

On Wednesday, March 30, 2016 at 6:48:41 AM UTC-4, Martin Fenner wrote:
>
> Ingrid,
>
> I will update pandoc-jats. 
>
> Best,
>
> Martin
>
> On Wednesday, March 30, 2016 at 2:24:54 AM UTC+2, John MacFarlane wrote:
>>
>> The custom writer needs to be updated to handle the 
>> SoftBreak element, which was added in recent versions of pandoc. 
>> You should write to Martin Fenner about this. 
>>
>> +++ schnei...-ZbGKxL/pcrQ@public.gmane.org [Mar 29 16 13:02 ]: 
>> >   All, 
>> >   I'm new to pandoc, and honestly, don't understand much beyond the 
>> >   commands I'm supposed to use. I'm trying to use pandoc to convert 
>> >   Microsoft Word files to Markdown, and then use Martin Fenner's 
>> >   pandoc-jats to convert the Markdown files to JATS XML. I've been able 
>> >   to convert Word documents to Markdown, but every time I try to 
>> convert 
>> >   the Markdown file to JATS I get some variation of the following error 
>> >   message: 
>> >   WARNING: Undefined function 'SoftBreak' 
>> >   pandoc: user error (Incorrect result type (string expected, got nil)) 
>> >   Sometimes I get the 'WARNING' line, sometimes I don't, sometimes I 
>> get 
>> >   it 50 times before I get the pandoc line.I've tried various files 
>> from 
>> >   various sources. I don't know what I'm doing wrong, and I haven't 
>> found 
>> >   a satisfactory answer anywhere, so I'm hoping someone here can help 
>> me. 
>> >   If there's more information you need, please let me know and I'll 
>> >   provide it. 
>> >   Thanks in advance! 
>> >   Ingrid 
>> > 
>> >   -- 
>> >   You received this message because you are subscribed to the Google 
>> >   Groups "pandoc-discuss" group. 
>> >   To unsubscribe from this group and stop receiving emails from it, 
>> send 
>> >   an email to [1]pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org 
>> >   To post to this group, send email to 
>> >   [2]pandoc-...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org 
>> >   To view this discussion on the web visit 
>> >   [3]
>> https://groups.google.com/d/msgid/pandoc-discuss/7806a6af-cdf1-4bd5- 
>> >   ab77-cf75eea82d3d%40googlegroups.com. 
>> >   For more options, visit [4]https://groups.google.com/d/optout. 
>> > 
>> >References 
>> > 
>> >   1. mailto:pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org 
>> >   2. mailto:pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org 
>> >   3. 
>> https://groups.google.com/d/msgid/pandoc-discuss/7806a6af-cdf1-4bd5-ab77-cf75eea82d3d-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org?utm_medium=email&utm_source=footer 
>> >   4. https://groups.google.com/d/optout 
>>
>>

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Re: Assistance with pandoc-jats

[Patrick Leevers]

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Hi Martin
I'm a new user, as of today, running under Mac Sierra. I'm seeing the exact 
same problem: a "WARNING: Undefined function 'SoftBreak'" warning for every 
citation.
My pandoc-jats is the current download from GitHub: apparently 2 years old. 
Is the latest update posted there?

Thanks
Pat

On Wednesday, 30 March 2016 11:48:41 UTC+1, Martin Fenner wrote:
>
> Ingrid,
>
> I will update pandoc-jats. 
>
> Best,
>
> Martin
>
> On Wednesday, March 30, 2016 at 2:24:54 AM UTC+2, John MacFarlane wrote:
>>
>> The custom writer needs to be updated to handle the 
>> SoftBreak element, which was added in recent versions of pandoc. 
>> You should write to Martin Fenner about this. 
>>
>>

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Re: Assistance with pandoc-jats

[Steve]

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Just add the following code to the lua file (just about anywhere) to get 
past the error:

function SoftBreak()
  return ""
end





On Monday, January 16, 2017 at 11:27:41 AM UTC-7, Patrick Leevers wrote:
>
> Hi Martin
> I'm a new user, as of today, running under Mac Sierra. I'm seeing the 
> exact same problem: a "WARNING: Undefined function 'SoftBreak'" warning for 
> every citation.
> My pandoc-jats is the current download from GitHub: apparently 2 years 
> old. Is the latest update posted there?
>
> Thanks
> Pat
>
> On Wednesday, 30 March 2016 11:48:41 UTC+1, Martin Fenner wrote:
>>
>> Ingrid,
>>
>> I will update pandoc-jats. 
>>
>> Best,
>>
>> Martin
>>
>> On Wednesday, March 30, 2016 at 2:24:54 AM UTC+2, John MacFarlane wrote:
>>>
>>> The custom writer needs to be updated to handle the 
>>> SoftBreak element, which was added in recent versions of pandoc. 
>>> You should write to Martin Fenner about this. 
>>>
>>>

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Re: Assistance with pandoc-jats

[Martin Fenner]

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Patrick and Steve,

I updated the pandoc-jats master branch to include the SoftBreak function, as suggested by Steve:
https://github.com/mfenner/pandoc-jats

Best,

Martin


—
Martin Fenner
DataCite Technical Director
http://orcid.org/0000-0003-1419-2405

--- original message ---
On Tue, Jan 17, 2017 at 07:12 am, <me-UgBJ2X1gjMjk1uMJSBkQmQ@public.gmane.org> Steve wrote:

Just add the following code to the lua file (just about anywhere) to get past the error:

functionSoftBreak()
return""
end










On Monday, January 16, 2017 at 11:27:41 AM UTC-7, Patrick Leevers wrote:
> Hi Martin

> I'm a new user, as of today, running under Mac Sierra. I'm seeing the exact same problem: a "WARNING: Undefined function 'SoftBreak'" warning for every citation.

> My pandoc-jats is the current download from GitHub: apparently 2 years old. Is the latest update posted there?


> Thanks

> Pat


> On Wednesday, 30 March 2016 11:48:41 UTC+1, Martin Fenner wrote:
>> Ingrid,


>> I will update pandoc-jats. 



>> Best,



>> Martin


>> On Wednesday, March 30, 2016 at 2:24:54 AM UTC+2, John MacFarlane wrote:
>>> The custom writer needs to be updated to handle the

>>> SoftBreak element, which was added in recent versions of pandoc.

>>> You should write to Martin Fenner about this.











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Re: Assistance with pandoc-jats

[Patrick Leevers]

Thanks Steve and Martin! That sorted my problem:  pandoc-jats now generates XML which oXygen’s out-of-the-box JATS article template can read with only very minor problems.
Pat

> On 17 Jan 2017, at 10:28, Martin Fenner <martin.fenner-i39mICoz+qVg9hUCZPvPmw@public.gmane.org> wrote:
> 
> Patrick and Steve,
> 
> I updated the pandoc-jats master branch to include the SoftBreak function, as suggested by Steve:
> https://github.com/mfenner/pandoc-jats
> 
> Best,
> 
> Martin
> 
> —
> Martin Fenner
> DataCite Technical Director
> http://orcid.org/0000-0003-1419-2405
> 
>> On Tue, Jan 17, 2017 at 07:12 am, <me-UgBJ2X1gjMjk1uMJSBkQmQ@public.gmane.org> Steve wrote:
>> 
>> Just add the following code to the lua file (just about anywhere) to get past the error:
>> 
>> function SoftBreak()
>>   return ""
>> end
>> 
>> 
>> 
>> 
>> 
>> On Monday, January 16, 2017 at 11:27:41 AM UTC-7, Patrick Leevers wrote:
>> Hi Martin
>> I'm a new user, as of today, running under Mac Sierra. I'm seeing the exact same problem: a "WARNING: Undefined function 'SoftBreak'" warning for every citation.
>> My pandoc-jats is the current download from GitHub: apparently 2 years old. Is the latest update posted there?
>> 
>> Thanks
>> Pat
>> 
>> On Wednesday, 30 March 2016 11:48:41 UTC+1, Martin Fenner wrote:
>> Ingrid,
>> 
>> I will update pandoc-jats. 
>> 
>> Best,
>> 
>> Martin
>> 
>> On Wednesday, March 30, 2016 at 2:24:54 AM UTC+2, John MacFarlane wrote:
>> The custom writer needs to be updated to handle the 
>> SoftBreak element, which was added in recent versions of pandoc. 
>> You should write to Martin Fenner about this. 
>> 
>> 
>> -- 
>> You received this message because you are subscribed to a topic in the Google Groups "pandoc-discuss" group.
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>> For more options, visit https://groups.google.com/d/optout.
> 
> -- 
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Re: Assistance with pandoc-jats

[Martin Fenner]

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Patrick, that is great. Please open an issue on the pandoc-jats Github if
there are further issues.

Best,

Martin

On Tue, Jan 17, 2017 at 11:53 AM Patrick Leevers <patrickleevers-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>
wrote:

> Thanks Steve and Martin! That sorted my problem:  pandoc-jats now
> generates XML which oXygen’s out-of-the-box JATS article template can read
> with only very minor problems.
> Pat
>
> > On 17 Jan 2017, at 10:28, Martin Fenner <martin.fenner-i39mICoz+qVg9hUCZPvPmw@public.gmane.org>
> wrote:
> >
> > Patrick and Steve,
> >
> > I updated the pandoc-jats master branch to include the SoftBreak
> function, as suggested by Steve:
> > https://github.com/mfenner/pandoc-jats
> >
> > Best,
> >
> > Martin
> >
> > —
> > Martin Fenner
> > DataCite Technical Director
> > http://orcid.org/0000-0003-1419-2405
> >
> >> On Tue, Jan 17, 2017 at 07:12 am, <me-UgBJ2X1gjMjk1uMJSBkQmQ@public.gmane.org> Steve wrote:
> >>
> >> Just add the following code to the lua file (just about anywhere) to
> get past the error:
> >>
> >> function SoftBreak()
> >>   return ""
> >> end
> >>
> >>
> >>
> >>
> >>
> >> On Monday, January 16, 2017 at 11:27:41 AM UTC-7, Patrick Leevers wrote:
> >> Hi Martin
> >> I'm a new user, as of today, running under Mac Sierra. I'm seeing the
> exact same problem: a "WARNING: Undefined function 'SoftBreak'" warning for
> every citation.
> >> My pandoc-jats is the current download from GitHub: apparently 2 years
> old. Is the latest update posted there?
> >>
> >> Thanks
> >> Pat
> >>
> >> On Wednesday, 30 March 2016 11:48:41 UTC+1, Martin Fenner wrote:
> >> Ingrid,
> >>
> >> I will update pandoc-jats.
> >>
> >> Best,
> >>
> >> Martin
> >>
> >> On Wednesday, March 30, 2016 at 2:24:54 AM UTC+2, John MacFarlane wrote:
> >> The custom writer needs to be updated to handle the
> >> SoftBreak element, which was added in recent versions of pandoc.
> >> You should write to Martin Fenner about this.
> >>
> >>
> >> --
> >> You received this message because you are subscribed to a topic in the
> Google Groups "pandoc-discuss" group.
> >> To unsubscribe from this topic, visit
> https://groups.google.com/d/topic/pandoc-discuss/b6u7C2sigkw/unsubscribe.
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Martin Fenner
DataCite Technical Director
http://orcid.org/0000-0003-1419-2405

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