Markdown to PDF: Missing hyperlinks in bibliography for webpage citations

Markdown to PDF: Missing hyperlinks in bibliography for webpage citations

[L]

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Hi, I have a script that converts my Markdown documents to PDF via Pandoc. 
For `--bibliography`, I have specified a Better BibTex *.bib file, and for 
`--csl`, I have specified nature.csl from my Zotero folder.

When I run the script, everything works perfectly except that where Pandoc 
inserts the references at the end of the document, my web page references 
do not include their hyperlink. 

One thing I tried was switch the nature.csl to the apa.csl. When run with 
apa.csl, web page hyperlinks were correctly inserted in the references.

Is this something wrong with: 1) the nature.csl stylesheet; 2) a missing 
Pandoc option; or 3) a Zotero/Better BibTex setting?

Here is the exact code I'm using:
MARKDOWN_DOC="/path/to/doc.md"

pandoc \
-s \
-f markdown \
-o ${MARKDOWN_DOC}.pdf \
-V geometry:margin=1in \
--bibliography "/path/to/BBTBibliography.bib" \
--csl "/Users/user/Zotero/styles/nature.csl" \
$MARKDOWN_DOC

Any help would be appreciated, thanks!

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Re: Markdown to PDF: Missing hyperlinks in bibliography for webpage citations

[Agustín Martín]

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You'd need to check the csl you are using and how each of them is 
referencing the URL field.

After a quick glance at apa.csl and nature.csl from zotero.org, it seems 
that apa inserts URLs more often (nature needs the bib entry to be of type 
webpage?)

On Tuesday, July 9, 2019 at 9:25:02 PM UTC+2, L wrote:
>
> Hi, I have a script that converts my Markdown documents to PDF via Pandoc. 
> For `--bibliography`, I have specified a Better BibTex *.bib file, and for 
> `--csl`, I have specified nature.csl from my Zotero folder.
>
> When I run the script, everything works perfectly except that where Pandoc 
> inserts the references at the end of the document, my web page references 
> do not include their hyperlink. 
>
> One thing I tried was switch the nature.csl to the apa.csl. When run with 
> apa.csl, web page hyperlinks were correctly inserted in the references.
>
> Is this something wrong with: 1) the nature.csl stylesheet; 2) a missing 
> Pandoc option; or 3) a Zotero/Better BibTex setting?
>
> Here is the exact code I'm using:
> MARKDOWN_DOC="/path/to/doc.md"
>
> pandoc \
> -s \
> -f markdown \
> -o ${MARKDOWN_DOC}.pdf \
> -V geometry:margin=1in \
> --bibliography "/path/to/BBTBibliography.bib" \
> --csl "/Users/user/Zotero/styles/nature.csl" \
> $MARKDOWN_DOC
>
> Any help would be appreciated, thanks!
>

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Re: Markdown to PDF: Missing hyperlinks in bibliography for webpage citations

[John MacFarlane]

Try setting

link-citations: true

in your YAML metadata.  Or, use -Mlink-citations on
the command line.


L <leogwill3-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org> writes:

> Hi, I have a script that converts my Markdown documents to PDF via Pandoc. 
> For `--bibliography`, I have specified a Better BibTex *.bib file, and for 
> `--csl`, I have specified nature.csl from my Zotero folder.
>
> When I run the script, everything works perfectly except that where Pandoc 
> inserts the references at the end of the document, my web page references 
> do not include their hyperlink. 
>
> One thing I tried was switch the nature.csl to the apa.csl. When run with 
> apa.csl, web page hyperlinks were correctly inserted in the references.
>
> Is this something wrong with: 1) the nature.csl stylesheet; 2) a missing 
> Pandoc option; or 3) a Zotero/Better BibTex setting?
>
> Here is the exact code I'm using:
> MARKDOWN_DOC="/path/to/doc.md"
>
> pandoc \
> -s \
> -f markdown \
> -o ${MARKDOWN_DOC}.pdf \
> -V geometry:margin=1in \
> --bibliography "/path/to/BBTBibliography.bib" \
> --csl "/Users/user/Zotero/styles/nature.csl" \
> $MARKDOWN_DOC
>
> Any help would be appreciated, thanks!
>
> -- 
> You received this message because you are subscribed to the Google Groups "pandoc-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, send an email to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org
> To post to this group, send email to pandoc-discuss-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org
> To view this discussion on the web visit https://groups.google.com/d/msgid/pandoc-discuss/24b83a67-ae6a-4022-bc87-c5f66d22adaa%40googlegroups.com.
> For more options, visit https://groups.google.com/d/optout.

Re: Markdown to PDF: Missing hyperlinks in bibliography for webpage citations

[L]

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Welp, looks like it's time to learn some CSL... Thanks for the help!

On Wednesday, July 10, 2019 at 2:54:16 AM UTC-5, Agustín Martín wrote:
>
> You'd need to check the csl you are using and how each of them is 
> referencing the URL field.
>
> After a quick glance at apa.csl and nature.csl from zotero.org, it seems 
> that apa inserts URLs more often (nature needs the bib entry to be of type 
> webpage?)
>

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Re: Markdown to PDF: Missing hyperlinks in bibliography for webpage citations

[L]

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Hi John, 

As far as I understand it, the YAML option `link-citations: true` only 
concerns inserting links from where the source is cited in the document to 
where the source appears in the bibliography at the end of the document. 
That option works fine for me and is not what I am having a problem with. I 
am having a problem specifically with the style of my bibliography. I'm 
simply wondering why the "Nature" style does not include the web address 
for the source in the bibliography. It appears to be an issue with the 
`nature.csl` style file, as per Augustín. Thanks for the reply though.

On Wednesday, July 10, 2019 at 2:13:23 PM UTC-5, John MacFarlane wrote:
>
>
> Try setting 
>
> link-citations: true 
>
> in your YAML metadata.  Or, use -Mlink-citations on 
> the command line. 
>

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