Hi all,<div><br /></div><div>I created a mulled biocontainer with pandoc and several R libraries, as it is a requirement for my R script. But when I try to use it, I get the following error:</div><div><div><div><span>/usr/local/bin/pandoc: error while loading shared libraries: libgmp.so.10: cannot open shared object file: No such file or directory
</span></div></div><div><div><span><a href="https://github.com/nf-core/crisprseq/actions/runs/3900874470/jobs/6662044571#step:4:205">204</a>  Error in system(paste(shQuote(pandoc_path), "--version"), intern = TRUE) : 
</span></div></div><div><div><span><a href="https://github.com/nf-core/crisprseq/actions/runs/3900874470/jobs/6662044571#step:4:206">205</a>    error in running command
</span></div></div><div><div><span><a href="https://github.com/nf-core/crisprseq/actions/runs/3900874470/jobs/6662044571#step:4:207">206</a>  Calls: &lt;Anonymous&gt; ... get_pandoc_version -&gt; with_pandoc_safe_environment -&gt; force -&gt; system
</span></div></div><div><div><span><a href="https://github.com/nf-core/crisprseq/actions/runs/3900874470/jobs/6662044571#step:4:208">207</a>  Execution halted</span></div></div></div><div><br /></div><div><span>For example, when entering the docker container, I run:</span></div><div><span>docker run -it quay.io/biocontainers/mulled-v2-39480160ac5fd8ae2aaba8eb25795cb6f304e1ca:5e51897b0f9cc614dfec8ac1df8b960aeb75dfcd-0 bash<br /></span></div><div><span>/usr/local/bin/pandoc</span><br /></div><div>and the output is:</div><div><span>/usr/local/bin/pandoc: error while loading shared libraries: libgmp.so.10: cannot open shared object file: No such file or directory</span><br /></div><div><br /></div><div>I have looked from some solutions, but all of them require installing different pandoc builds (<a href="https://github.com/jgm/pandoc/issues/2774#issuecomment-196380657">https://github.com/jgm/pandoc/issues/2774#issuecomment-196380657</a>) or building the binary (<a href="https://github.com/r-hub/rhub-linux-builders/issues/10#issuecomment-255916700">https://github.com/r-hub/rhub-linux-builders/issues/10#issuecomment-255916700</a>), which, as far as I know, is not possible as I need it inside the mulled container which is created automatically.</div><div><br /></div><div>I would appreciate if you can help me solve this problem. </div><div><br /></div><div>Thanks!</div><div>Júlia</div><div><span><br /></span></div>

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