I did connect all the files to my original post, as well as the .docx 
output. When I look at my post, I can see the files there.  Do they not 
show up for you?

On Saturday, August 5, 2017 at 1:06:36 PM UTC-4, John MacFarlane wrote:
>
> There's not much we can do to help without a specific sample 
> we can test with, including all the files needed to 
> reproduce the problem... 
>
> +++ Robert Goulding [Aug 04 17 12:59 ]: 
> >    I just compiled a fragment of an article I was writing, from markdown 
> >   to docx.  The command was: `pandoc -o alhazen.docx -F pandoc-citeproc 
> >   --bibliography=bib.bib alhazen.mmd`. 
> >   I received a warning about a duplicate reference. The docx file 
> >   contained several blank footnotes.  When I replaced the second 
> >   reference to `[@Alhazen1572-qk, V.9]` with an Ibid., the warning 
> >   disappeared, yet I *still* get empty footnotes. 
> >   I have used 1.19.2.1, and also a nightly beta -- with the same 
> results. 
> > 
> >   -- 
> >   You received this message because you are subscribed to the Google 
> >   Groups "pandoc-discuss" group. 
> >   To unsubscribe from this group and stop receiving emails from it, send 
> >   an email to [1]pandoc-discus...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:>. 
> >   To post to this group, send email to 
> >   [2]pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:>. 
> >   To view this discussion on the web visit 
> >   [3]
> https://groups.google.com/d/msgid/pandoc-discuss/185cf47c-84e5-41b3- 
> >   8a88-ba092bc4f191%40googlegroups.com. 
> >   For more options, visit [4]https://groups.google.com/d/optout. 
> > 
> >References 
> > 
> >   1. mailto:pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:> 
> >   2. mailto:pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <javascript:> 
> >   3. 
> https://groups.google.com/d/msgid/pandoc-discuss/185cf47c-84e5-41b3-8a88-ba092bc4f191-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org?utm_medium=email&utm_source=footer 
> >   4. https://groups.google.com/d/optout 
>
>
>
> >% Generated by Paperpile. Check out http://paperpile.com for more 
> information. 
> >% BibTeX export options can be customized via Settings -> BibTeX. 
> > 
> >@BOOK{Euclid1573-ix, 
> >  title    = "La prospettiva di Euclide", 
> >  author   = "{Euclid}", 
> >  editor   = "Danti, Egnazio", 
> >  year     =  1573, 
> >  address  = "Florence", 
> >  keywords = "Optics/Optics 3 - Renaissance;!!Cathetus;!Early Printed 
> Books", 
> >  language = "it" 
> >} 
> > 
> >@BOOK{Euclid1557-wz, 
> >  title    = "Optica et Catoptrica, nunquam antehac graece aedita", 
> >  author   = "{Euclid}", 
> >  editor   = "Pena, Jean", 
> >  year     =  1557, 
> >  address  = "Paris", 
> >  keywords = "!!Cathetus;!Early Printed Books;Optics/Optics 3 - 
> Renaissance", 
> >  language = "la" 
> >} 
> > 
> >@BOOK{Stevin1605-ys, 
> >  title    = "Mathematica hypomnemata", 
> >  author   = "Stevin, Simon", 
> >  volume   = "3: De optica", 
> >  year     =  1605, 
> >  address  = "Leiden", 
> >  keywords = "!Early Printed Books;Binocularism article;!!Cathetus", 
> >  language = "la" 
> >} 
> > 
> >@BOOK{Nouhuys1998-vh, 
> >  title     = "The age of two-faced Janus: the comets of 1577 and 1618 
> and the 
> >               decline of the Aristotelian world view in the 
> Netherlands", 
> >  author    = "Nouhuys, Tabitta van", 
> >  publisher = "Brill", 
> >  series    = "Brill's studies in intellectual history", 
> >  year      =  1998, 
> >  address   = "Leiden", 
> >  keywords  = " 
> >               
> Aristotle--Knowledge--Astronomy;Comets--1577;Comets--1618;Astronomy--Netherlands--History;Janus 
>
> >               (Roman deity);Optics/Optics 3 - Renaissance;Renaissance 
> Math \& 
> >               Science General;!!Cathetus" 
> >} 
> > 
> >@BOOK{Lejeune1954-ls, 
> >  title    = "Recherches sur la catoptrique grecque: d'apr{\`e}s les 
> sources 
> >              antiques et m{\'e}di{\'e}vales", 
> >  author   = "Lejeune, Albert", 
> >  series   = "M{\'e}moires de l'Acad{\'e}mie Royale de Belgique: Classe 
> des 
> >              Lettres et des Sciences Morales et Politiques", 
> >  year     =  1954, 
> >  address  = "Brussels", 
> >  keywords = "Optics/Optics 1 - Ancient;Optics/Refraction: Ancient and 
> >              Medieval;!!Cathetus", 
> >  language = "fr" 
> >} 
> > 
> >@BOOK{Kepler1951-dw, 
> >  title     = "Gesammelte Werke", 
> >  author    = "Kepler, Johannes", 
> >  editor    = "Caspar, Max", 
> >  publisher = "C. H. Beck'sche Verlagsbuchhandlung", 
> >  volume    = "15: Briefe 1604-1607", 
> >  year      =  1951, 
> >  address   = "Munich", 
> >  keywords  = "Renaissance Math \& Science General;Binocularism 
> >               article;!!Cathetus", 
> >  language  = "de" 
> >} 
> > 
> >@BOOK{Vimercato1565-vw, 
> >  title    = "In quatuor libros Aristotelis Meteorologicorum", 
> >  author   = "Vimercato, Francesco", 
> >  year     =  1565, 
> >  address  = "Venice", 
> >  keywords = "!Early Printed Books;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Bordiga1925-fx, 
> >  title    = "Giovanni Battista Benedetti: Filosofo e matematico 
> veneziano del 
> >              secolo {XVI}", 
> >  author   = "Bordiga, Giovanni", 
> >  journal  = "Atti del Reale Istituto Veneto di scienze, lettere ed 
> arti", 
> >  volume   =  85, 
> >  number   =  2, 
> >  pages    = "585--754", 
> >  year     =  1925, 
> >  keywords = "Optics/Optics 3 - Renaissance;Binocularism 
> article;!!Cathetus", 
> >  language = "it" 
> >} 
> > 
> >@BOOK{Dijksterhuis1943-hn, 
> >  title     = "Simon Stevin", 
> >  author    = "Dijksterhuis, E J", 
> >  publisher = "Martin Nijhoff", 
> >  year      =  1943, 
> >  address   = "The Hague", 
> >  keywords  = "Renaissance Math \& Science General;Binocularism 
> >               article;!!Cathetus", 
> >  language  = "nl" 
> >} 
> > 
> >@BOOK{Stevin1605-da, 
> >  title    = "Wisconstighe Ghedachtenisse", 
> >  author   = "Stevin, Simon", 
> >  volume   = "3: Van de Deursichtighe", 
> >  year     =  1605, 
> >  address  = "Leiden", 
> >  keywords = "!Early Printed Books;Binocularism article;!!Cathetus", 
> >  language = "nl" 
> >} 
> > 
> >@BOOK{Stevin1605-pr, 
> >  title    = "Mathematica hypomnemata", 
> >  author   = "Stevin, Simon", 
> >  year     =  1605, 
> >  address  = "Leiden", 
> >  keywords = "!Early Printed Books;!!Cathetus", 
> >  language = "la" 
> >} 
> > 
> >@BOOK{Mersenne1623-yd, 
> >  title    = "Quaestiones celeberrimae in Genesim", 
> >  author   = "Mersenne, Marin", 
> >  year     =  1623, 
> >  address  = "Paris", 
> >  keywords = "!Early Printed Books;Binocularism article;!!Cathetus", 
> >  language = "lat" 
> >} 
> > 
> >@BOOK{Benedetti1585-mr, 
> >  title    = "Diversarum speculationum mathematicarum, et physicarum 
> liber", 
> >  author   = "Benedetti, Giovanni Battista", 
> >  year     =  1585, 
> >  address  = "Turin", 
> >  keywords = "!Early Printed Books;Binocularism article;!!Cathetus", 
> >  language = "la" 
> >} 
> > 
> >@INCOLLECTION{Shapiro1990-rz, 
> >  title     = "The \textit{Optical Lectures} and the foundations of the 
> theory 
> >               of optical imagery", 
> >  booktitle = "Before Newton: the life and times of Isaac Barrow", 
> >  author    = "Shapiro, Alan E", 
> >  editor    = "Feingold, Mordechai", 
> >  publisher = "Cambridge University Press", 
> >  pages     = "105--178", 
> >  year      =  1990, 
> >  address   = "Cambridge England ; New York", 
> >  keywords  = "Collections;Optics/Optics 4 - Modern;Binocularism 
> >               article;!!Cathetus", 
> >  language  = "eng" 
> >} 
> > 
> >@INCOLLECTION{Bellis2016-po, 
> >  title     = "The Perception of Spatial Depth in Kepler's and Descartes' 
> >               Optics: A Study of an Epistemological Reversal", 
> >  booktitle = "Boundaries, extents and circulations: space and spatiality 
> in 
> >               early modern natural philosophy", 
> >  author    = "Bellis, Delphine", 
> >  editor    = "Vermeir, Koen and Regier, Jonathan", 
> >  publisher = "Springer", 
> >  pages     = "125--152", 
> >  series    = "Studies in history and philosophy of science", 
> >  year      =  2016, 
> >  address   = "Dordrecht", 
> >  keywords  = "Binocularism article;!!Cathetus" 
> >} 
> > 
> >@BOOK{Lejeune1956-in, 
> >  title     = "L'optique de Claude Ptol{\'e}m{\'e}e: dans la version 
> latine 
> >               d'apr{\`e}s l'arabe de l'{\'e}mir Eug{\`e}ne de Sicile", 
> >  author    = "Lejeune, Albert", 
> >  publisher = "Brill", 
> >  year      =  1956, 
> >  address   = "Leiden", 
> >  keywords  = "Optics/Optics 1 - Ancient;Binocularism 
> article;!!Cathetus", 
> >  language  = "fr" 
> >} 
> > 
> >@INCOLLECTION{Frangenberg1987-vk, 
> >  title     = "Il ``De visu'' di Giovan Battista Benedetti", 
> >  booktitle = "Cultura, scienze e tecniche nella Venezia del Cinquecento: 
> atti 
> >               del convegno internazionale di studio Giovan Battista 
> Benedetti 
> >               e il suo tempo", 
> >  author    = "Frangenberg, Thomas", 
> >  publisher = "Istituto Veneto di Scienze Lettere ed Arti", 
> >  pages     = "271--282", 
> >  year      =  1987, 
> >  address   = "Venice", 
> >  keywords  = "Optics/Optics 3 - Renaissance;Binocularism 
> article;!!Cathetus", 
> >  language  = "it" 
> >} 
> > 
> >@ARTICLE{Omodeo2009-pe, 
> >  title     = "La cosmologia infinitistica di Giovanni Battista 
> Benedetti", 
> >  author    = "Omodeo, Pietro Daniel", 
> >  journal   = "Bruniana \& Campanelliana", 
> >  publisher = "Accademia Editoriale", 
> >  volume    =  15, 
> >  number    =  1, 
> >  pages     = "181--190", 
> >  year      =  2009, 
> >  keywords  = "Renaissance Math \& Science General;Binocularism 
> >               article;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Field1985-tz, 
> >  title     = "Giovanni Battista Benedetti on the Mathematics of Linear 
> >               Perspective", 
> >  author    = "Field, J V", 
> >  journal   = "Journal of the Warburg and Courtauld Institutes", 
> >  publisher = "Warburg Institute", 
> >  volume    =  48, 
> >  pages     = "71--99", 
> >  year      =  1985, 
> >  keywords  = "Renaissance Math \& Science General;Optics/Optics 3 - 
> >               Renaissance;Binocularism article;!!Cathetus" 
> >} 
> > 
> >@BOOK{Lindberg1976-jm, 
> >  title     = "Theories of Vision from {Al-Kindi} to Kepler", 
> >  author    = "Lindberg, David C", 
> >  publisher = "University of Chicago Press", 
> >  year      =  1976, 
> >  address   = "Chicago", 
> >  keywords  = "Optics/Optics 5 - Surveys and General;Binocularism 
> >               article;!!Cathetus" 
> >} 
> > 
> >@BOOK{Lindberg1970-qw, 
> >  title     = "John Pecham and the science of optics: Perspectiva 
> communis", 
> >  author    = "Lindberg, David", 
> >  publisher = "University of Wisconsin Press", 
> >  series    = "University of Wisconsin publications in medieval science", 
> >  year      =  1970, 
> >  address   = "Madison", 
> >  keywords  = "Optics--Early works to 1800;Optics/Optics 2 - 
> >               Medieval;!!Cathetus" 
> >} 
> > 
> >@BOOK{Smith2014-ae, 
> >  title     = "From Sight to Light: The Passage from Ancient to Modern 
> Optics", 
> >  author    = "Smith, A Mark", 
> >  publisher = "University of Chicago Press", 
> >  year      =  2014, 
> >  address   = "Chicago", 
> >  keywords  = "Optics/Optics 5 - Surveys and General;!!Cathetus" 
> >} 
> > 
> >@BOOK{Darrigol2012-tj, 
> >  title     = "A History of Optics from Greek Antiquity to the Nineteenth 
> >               Century", 
> >  author    = "Darrigol, O", 
> >  publisher = "Oxford University Press", 
> >  year      =  2012, 
> >  address   = "Oxford", 
> >  keywords  = "Optics/Optics 5 - Surveys and General;Binocularism 
> >               article;!!Cathetus" 
> >} 
> > 
> >@PHDTHESIS{De_Wreede2007-pv, 
> >  title     = "Willebrord Snellius (1580-1626): a humanist reshaping the 
> >               mathematical sciences", 
> >  author    = "De Wreede, LC", 
> >  publisher = "igitur-archive.library.uu.nl", 
> >  year      =  2007, 
> >  school    = "Utrecht", 
> >  keywords  = "Optics/Optics 4 - Modern/Snell;Optics/Optics 4 - 
> >               Modern;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Gilbert1965-of, 
> >  title    = "Francesco Vimercato of Milan: A {Bio-Bibliography}", 
> >  author   = "Gilbert, Neal W", 
> >  journal  = "Studies in the Renaissance", 
> >  volume   =  12, 
> >  pages    = "188--217", 
> >  year     =  1965, 
> >  keywords = "Binocularism article;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Ruby1986-sm, 
> >  title    = "The Origins of Scientific ``Law''", 
> >  author   = "Ruby, Jane E.", 
> >  journal  = "Journal of the history of ideas", 
> >  volume   =  47, 
> >  number   =  3, 
> >  pages    = "341--359", 
> >  year     =  1986, 
> >  keywords = "Thomas Harriot;Optics/Optics 5 - Surveys and General;Law of 
> >              Nature;Binocularism article;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Dijksterhuis2004-de, 
> >  title    = "Once Snell Breaks Down: From Geometrical to Physical Optics 
> in 
> >              the Seventeenth Century", 
> >  author   = "Dijksterhuis, Fokko Jan", 
> >  journal  = "Annals of science", 
> >  volume   =  61, 
> >  number   =  2, 
> >  pages    = "165--185", 
> >  year     =  2004, 
> >  keywords = "Thomas Harriot;Optics/Optics 4 - Modern;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Lejeune1947-xr, 
> >  title    = "Les lois de la r{\'e}flexion dans l'optique de 
> Ptolem{\'e}e", 
> >  author   = "Lejeune, Albert", 
> >  journal  = "L'Antiquit{\'e} Classique", 
> >  volume   =  15, 
> >  number   =  2, 
> >  pages    = "241--56", 
> >  year     =  1947, 
> >  keywords = "Optics/Optics 1 - Ancient;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Smith1999-wc, 
> >  title    = "Ptolemy and the Foundations of Ancient Mathematical Optics: 
> A 
> >              Source Based Guided Study", 
> >  author   = "Smith, A. Mark", 
> >  journal  = "Transactions of the American Philosophical Society", 
> >  volume   =  89, 
> >  number   =  3, 
> >  pages    = "1--172", 
> >  series   = "New Series", 
> >  month    =  jan, 
> >  year     =  1999, 
> >  keywords = "Optics/Optics 1 - Ancient;Binocularism article;!!Cathetus" 
> >} 
> > 
> >@INCOLLECTION{Lorch1985-fg, 
> >  title     = "{Pseudo-Euclid} on the Position of the Image in 
> Reflection: 
> >               Interpretations by an Anonymous Commentator, by Pena, and 
> by 
> >               Kepler", 
> >  booktitle = "The Light of Nature: Essays in the History and Philosophy 
> of 
> >               Science presented to A. C. Crombie", 
> >  author    = "Lorch, Richard", 
> >  editor    = "North, J D and Roche, J J", 
> >  publisher = "Martinus Nijhoff", 
> >  pages     = "135--44", 
> >  series    = "Archives internationales d'histoire des id{\'e}es", 
> >  year      =  1985, 
> >  address   = "Dordrecht", 
> >  keywords  = "Optics/Optics 3 - Renaissance;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Turbayne1959-da, 
> >  title    = "Grosseteste and an Ancient Optical Principle", 
> >  author   = "Turbayne, Colin M.", 
> >  journal  = "Isis; an international review devoted to the history of 
> science 
> >              and its cultural influences", 
> >  volume   =  50, 
> >  number   =  4, 
> >  pages    = "467--472", 
> >  month    =  dec, 
> >  year     =  1959, 
> >  keywords = "Optics/Optics 2 - Medieval;Binocularism article;!!Cathetus" 
> >} 
> > 
> >@ARTICLE{Smith2005-uz, 
> >  title    = "Reflections on the {Hockney-Falco} Thesis: Optical Theory 
> and 
> >              Artistic Practice in the Fifteenth and Sixteenth 
> Centuries", 
> >  author   = "Smith, A. Mark", 
> >  journal  = "Early science and medicine", 
> >  volume   =  10, 
> >  number   =  2, 
> >  pages    = "163--186", 
> >  year     =  2005, 
> >  keywords = "Optics/Optics 3 - Renaissance/Hockney Thesis Dupre 
> >              Collection;Binocularism article;!!Cathetus" 
> >} 
> > 
> >% The entry below contains non-ASCII chars that could not be converted 
> >% to a LaTeX equivalent. 
> >@ARTICLE{Smith2006-eg, 
> >  title    = "Alhacen on the Principles of Reflection: A Critical 
> Edition, with 
> >              English Translation and Commentary, of Books 4 and 5 of 
> Alhacen's 
> >              ``De Aspectibus'', the Medieval Latin Version of Ibn 
> al-Haytham's 
> >              ``Kit{\=a}b al-Man{\=a}ẓir''. Volume One: Introduction and 
> Latin 
> >              Text", 
> >  author   = "Smith, A. Mark", 
> >  journal  = "Transactions of the American Philosophical Society", 
> >  volume   =  96, 
> >  number   =  2, 
> >  pages    = "i--288", 
> >  series   = "New Series", 
> >  month    =  jan, 
> >  year     =  2006, 
> >  keywords = "Optics/Optics 2 - Medieval;!!Cathetus" 
> >} 
> > 
> >@INCOLLECTION{Chen-Morris2001-rk, 
> >  title     = "Kepler's Critique of the Medieval Perspectivist 
> Tradition", 
> >  booktitle = "Optics and Astronomy", 
> >  author    = "Chen-Morris, Raz Dov and Unguru, Sabetai", 
> >  editor    = "Simon, G{\'e}rard and D{\'e}barbat, Suzanne", 
> >  publisher = "Brepols", 
> >  volume    =  12, 
> >  pages     = "83--92", 
> >  series    = "Proceedings of the XXth International Congress of History 
> of 
> >               Science (Li{\`e}ge, 20--26 July 1997)", 
> >  year      =  2001, 
> >  address   = "Turnhout", 
> >  keywords  = "Optics/Optics 3 - Renaissance;Binocularism 
> article;!!Cathetus" 
> >} 
> > 
> >@INCOLLECTION{Dupr2007-vk, 
> >  title     = "Images in the Air: Optical Games, Magic and Imagination", 
> >  booktitle = "Spirits Unseen: The Representation of Subtle Bodies in 
> Early 
> >               Modern European Culture", 
> >  author    = "Dupr{\'e}, Sven", 
> >  editor    = "{Christine G{\"o}ttler} and {Wolfgang Neuber}", 
> >  publisher = "Brill", 
> >  volume    =  9, 
> >  pages     = "71--92", 
> >  year      =  2007, 
> >  address   = "Leiden; Boston", 
> >  keywords  = "Europe Civilization., Spirits History.;Optics/Optics 3 - 
> >               Renaissance;Binocularism article;!!Cathetus", 
> >  language  = "eng" 
> >} 
> > 
> >@BOOK{Euclid1895-nk, 
> >  title     = "Opera omnia", 
> >  author    = "{Euclid}", 
> >  editor    = "Heiberg, J L", 
> >  publisher = "B. G. Teubner", 
> >  volume    = "7: Euclidis Optica ... Catoptrica", 
> >  year      =  1895, 
> >  address   = "Leipzig" 
> >} 
> > 
> >@INCOLLECTION{Takahashi1992-pa, 
> >  title     = "The Problem of the Authorship of the Catoptrica : A 
> Refutation 
> >               of the Standard View of the Work, Mainly Focussing on 
> Heiberg's 
> >               Arguments", 
> >  booktitle = "The Medieval Latin Traditions of Euclid's Catoptrica: a 
> critical 
> >               edition of De speculis with an introduction, English 
> >               translation, and commentary", 
> >  author    = "Takahashi, Ken'ichi", 
> >  editor    = "Takahashi, Ken'ichi", 
> >  publisher = "Kyushu University Press", 
> >  pages     = "13--37", 
> >  chapter   =  2, 
> >  year      =  1992, 
> >  address   = "Kyushu" 
> >} 
> > 
> >@BOOK{Smith1996-fg, 
> >  title     = "Ptolemy's Theory of Visual Perception: An English 
> Translation of 
> >               the ``Optics'' with Introduction and Commentary", 
> >  author    = "Smith, A Mark", 
> >  publisher = "American Philosophical Society", 
> >  series    = "Transactions of the American Philosophical Society", 
> >  year      =  1996, 
> >  address   = "Philadelphia" 
> >} 
> > 
> >@BOOK{Weinrich1998-zr, 
> >  title     = "Die Lichtbrechung in den Theorien von Descartes und 
> Fermat", 
> >  author    = "Weinrich, Klaus", 
> >  publisher = "F. Steiner", 
> >  series    = "Sudhoffs Archiv: Beihefte", 
> >  year      =  1998, 
> >  address   = "Stuttgart", 
> >  language  = "de" 
> >} 
> > 
> > 
> >@BOOK{Alhazen1572-qk, 
> >  title    = "Opticae thesaurus", 
> >  author   = "{Alhazen} and {Witelo}", 
> >  editor   = "Risner, Friedrich", 
> >  year     =  1572, 
> >  address  = "Basel", 
> >  language = "la" 
> >} 
> > 
> >@ARTICLE{De_Waard1935-fj, 
> >  title     = "Le manuscrit perdu de Snellius sur la r{\'e}fraction", 
> >  author    = "De Waard, Cornelis", 
> >  journal   = "Janus", 
> >  publisher = "Brill", 
> >  volume    =  39, 
> >  pages     = "51--73", 
> >  year      =  1935, 
> >  language  = "fr" 
> >} 
>
>

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