pandoc document conversion failed on NFS-mounted documents

pandoc document conversion failed on NFS-mounted documents

[Kenneth Daily]

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Hello,

I'm using RStudio (Version 0.98.738) RMarkdown to create files. When I 
click "Knit" (and it uses pandoc to convert Markdown to HTML) on a file 
hosted on an NFS filesystem (using CIFS on Redhat RHEL 6.0) I get an error:

Command:

/usr/lib/rstudio/bin/pandoc/pandoc mydoc.utf8.md --to html --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures --output mydoc.html --filter /usr/lib/rstudio/bin/pandoc/pandoc-citeproc --section-divs --smart --self-contained --template /usr/lib64/R/library/rmarkdown/rmd/h/default.html --variable jquery:/usr/lib64/R/library/rmarkdown/rmd/h/jquery-1.10.2 --variable bootstrap:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3 --variable theme:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3/css/bootstrap.min.css --no-highlight --variable highlightjs=/usr/lib64/R/library/rmarkdown/rmd/h/highlight --mathjax --variable mathjax-url:https://c328740.ssl.cf1.rackcdn.com/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML


Error:

pandoc: mydoc.html: hClose: does not exist (Host is down)
Error: pandoc document conversion failed
Execution halted


If I Copy the files to a local drive everything works fine. Suggestions?

Thanks!

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Re: pandoc document conversion failed on NFS-mounted documents

[Lorena Pantano]

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happens exactly the same to me. I am using over maverick.

El miércoles, 16 de abril de 2014 17:01:27 UTC-4, Kenneth Daily escribió:
>
> Hello,
>
> I'm using RStudio (Version 0.98.738) RMarkdown to create files. When I 
> click "Knit" (and it uses pandoc to convert Markdown to HTML) on a file 
> hosted on an NFS filesystem (using CIFS on Redhat RHEL 6.0) I get an error:
>
> Command:
>
> /usr/lib/rstudio/bin/pandoc/pandoc mydoc.utf8.md --to html --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures --output mydoc.html --filter /usr/lib/rstudio/bin/pandoc/pandoc-citeproc --section-divs --smart --self-contained --template /usr/lib64/R/library/rmarkdown/rmd/h/default.html --variable jquery:/usr/lib64/R/library/rmarkdown/rmd/h/jquery-1.10.2 --variable bootstrap:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3 --variable theme:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3/css/bootstrap.min.css --no-highlight --variable highlightjs=/usr/lib64/R/library/rmarkdown/rmd/h/highlight --mathjax --variable mathjax-url:https://c328740.ssl.cf1.rackcdn.com/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML
>
>
> Error:
>
> pandoc: mydoc.html: hClose: does not exist (Host is down)
> Error: pandoc document conversion failed
> Execution halted
>
>
> If I Copy the files to a local drive everything works fine. Suggestions?
>
> Thanks!
>

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Re: pandoc document conversion failed on NFS-mounted documents

[Ryan Hope]

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I too am having a similar issue except the mount point is cifs not nfs.

On Wednesday, April 16, 2014 5:01:27 PM UTC-4, Kenneth Daily wrote:
>
> Hello,
>
> I'm using RStudio (Version 0.98.738) RMarkdown to create files. When I 
> click "Knit" (and it uses pandoc to convert Markdown to HTML) on a file 
> hosted on an NFS filesystem (using CIFS on Redhat RHEL 6.0) I get an error:
>
> Command:
>
> /usr/lib/rstudio/bin/pandoc/pandoc mydoc.utf8.md --to html --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures --output mydoc.html --filter /usr/lib/rstudio/bin/pandoc/pandoc-citeproc --section-divs --smart --self-contained --template /usr/lib64/R/library/rmarkdown/rmd/h/default.html --variable jquery:/usr/lib64/R/library/rmarkdown/rmd/h/jquery-1.10.2 --variable bootstrap:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3 --variable theme:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3/css/bootstrap.min.css --no-highlight --variable highlightjs=/usr/lib64/R/library/rmarkdown/rmd/h/highlight --mathjax --variable mathjax-url:https://c328740.ssl.cf1.rackcdn.com/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML
>
>
> Error:
>
> pandoc: mydoc.html: hClose: does not exist (Host is down)
> Error: pandoc document conversion failed
> Execution halted
>
>
> If I Copy the files to a local drive everything works fine. Suggestions?
>
> Thanks!
>

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Re: pandoc document conversion failed on NFS-mounted documents

[John MacFarlane]

I've had a similar issue on cifs:

hClose: hardware fault (Input/output error)

I'm not sure how to solve it, though.

+++ Ryan Hope [Sep 16 14 12:29 ]:
>I too am having a similar issue except the mount point is cifs not nfs.
>
>On Wednesday, April 16, 2014 5:01:27 PM UTC-4, Kenneth Daily wrote:
>>
>> Hello,
>>
>> I'm using RStudio (Version 0.98.738) RMarkdown to create files. When I
>> click "Knit" (and it uses pandoc to convert Markdown to HTML) on a file
>> hosted on an NFS filesystem (using CIFS on Redhat RHEL 6.0) I get an error:
>>
>> Command:
>>
>> /usr/lib/rstudio/bin/pandoc/pandoc mydoc.utf8.md --to html --from markdown+autolink_bare_uris+ascii_identifiers+tex_math_single_backslash-implicit_figures --output mydoc.html --filter /usr/lib/rstudio/bin/pandoc/pandoc-citeproc --section-divs --smart --self-contained --template /usr/lib64/R/library/rmarkdown/rmd/h/default.html --variable jquery:/usr/lib64/R/library/rmarkdown/rmd/h/jquery-1.10.2 --variable bootstrap:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3 --variable theme:/usr/lib64/R/library/rmarkdown/rmd/h/bootstrap-3.0.3/css/bootstrap.min.css --no-highlight --variable highlightjs=/usr/lib64/R/library/rmarkdown/rmd/h/highlight --mathjax --variable mathjax-url:https://c328740.ssl.cf1.rackcdn.com/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML
>>
>>
>> Error:
>>
>> pandoc: mydoc.html: hClose: does not exist (Host is down)
>> Error: pandoc document conversion failed
>> Execution halted
>>
>>
>> If I Copy the files to a local drive everything works fine. Suggestions?
>>
>> Thanks!
>>
>
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Re: pandoc document conversion failed on NFS-mounted documents

[Matthew Landowski]

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I'm using a cifs drive and I get the same error above. I did some debugging 
and found that it would work fine from a local drive, but would always 
fail, but sometimes work from my network drive. Which is very hard to 
debug. Another work around is to save the source which is an Option in 
RStudio, but that only sometimes works. It's very strange to say the least.

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