Mathjax and TOC does not work with HTML custom lua writer

[AustinLe <lhoangan.nl-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org>]

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I was trying to generate the same HTML from Markdown with as one with `-s 
-t html` using the default `sample.lua` writer and `default.html5` but 
found that the table of contents is missing and math formulas does not 
render correctly. This is the command I was using:
```
pandoc --standalone --toc --mathjax --citeproc -f markdown 
--template=default.html5 -t sample.lua my-markdown.md -o index.html 
--variable document-css --variable highlighting-css --variable 
displaymath-css --variable csl-css --variable csl-entry-spacing
```
Pandoc version:
```
> pandoc -v
pandoc 2.17.1.1
Compiled with pandoc-types 1.22.1, texmath 0.12.4, skylighting 0.12.2,
citeproc 0.6.0.1, ipynb 0.2
User data directory: /share/home/leh/.pandoc
Copyright (C) 2006-2022 John MacFarlane. Web:  https://pandoc.org
This is free software; see the source for copying conditions. There is no
warranty, not even for merchantability or fitness for a particular purpose.
```

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