I'm currently able to run pandoc on a web server myself.
I just made a Dockerfile that derives from the offical python dockerfile,
After that you can just run:

RUN pip install pypandoc
RUN python -c "import pypandoc; pypandoc.download_pandoc()"

At this point, you'd have a working "web server" with pandoc,
you'd just have to write some code to actually make calls to pandoc in any 
way you see fit.
You could use a web framework like flask and just wrap an api around it.

You can do a similar thing in almost any language of your choice by making 
system calls with the text you'd like to convert.

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