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[130.92.0.84]) by gmr-mx.google.com with ESMTPS id b29si1123064ljf.6.2021.11.24.01.00.02 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 24 Nov 2021 01:00:03 -0800 (PST) Received-SPF: pass (google.com: domain of denis.maier-NSENcxR/0n0@public.gmane.org designates 130.92.0.84 as permitted sender) client-ip=130.92.0.84; X-Virus-Scanned: By University of Bern - MGW Original-Received: from mail.campus.unibe.ch (aai-edge-01.campus.unibe.ch [130.92.13.20]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) by mailhub-lb3.unibe.ch (Postfix) with ESMTPS id 9B8165000AA for ; Wed, 24 Nov 2021 10:00:00 +0100 (CET) Thread-Topic: Automaticly creating bibliography in md? Thread-Index: AQHX4EmdUkyuGVJXmkeJzQdUDcZ8NawQ0w0wgAAAejD///PhAIAAESEggAAl94CAABGvUP//9QOAgAAemMCAAAJK0IAAAgGAgAE5aNA= In-Reply-To: <7181c39d-c239-4a63-bbae-800bc4d8b523n-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Accept-Language: de-CH, en-US Content-Language: de-DE x-originating-ip: [172.18.72.2] X-Original-Sender: denis.maier-NSENcxR/0n0@public.gmane.org X-Original-Authentication-Results: gmr-mx.google.com; spf=pass (google.com: domain of denis.maier-NSENcxR/0n0@public.gmane.org designates 130.92.0.84 as permitted sender) smtp.mailfrom=denis.maier-NSENcxR/0n0@public.gmane.org; dmarc=pass (p=NONE sp=NONE dis=NONE) header.from=unibe.ch Precedence: list Mailing-list: list pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org; contact pandoc-discuss+owners-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org List-ID: X-Google-Group-Id: 1007024079513 List-Post: , List-Help: , List-Archive: , List-Unsubscribe: , Xref: news.gmane.io gmane.text.pandoc:29583 Archived-At: --_000_bb5a3b682ae748a09280ba75cb8b05c3unibech_ Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable You mean wiki-style links [[20200719191401]] being transformed to this: \[\= [20200719191401\]\]? I don=E2=80=99t have a solution for this. Maybe someone knows how escaping of brackets can be suppressed when going f= rom markdown to markdown ? Denis Von: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Im A= uftrag von Alan Gesendet: Dienstag, 23. November 2021 16:14 An: pandoc-discuss Betreff: Re: Automaticly creating bibliography in md? Thank you for your patience Denis. Finally, I have references in file, but... It messed my zettel links... :-( I dont care how references look, I just need them at the end On Tuesday, November 23, 2021 at 3:09:05 PM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote: Ok. Take this input file: ``` --- author: DM title: Test date: 18-Jul-2020 references: - type: article-journal id: WatsonCrick1953 author: - family: Watson given: J. D. - family: Crick given: F. H. C. issued: date-parts: - - 1953 - 4 - 25 title: 'Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid' title-short: Molecular structure of nucleic acids container-title: Nature volume: 171 issue: 4356 page: 737-738 DOI: 10.1038/171737a0 URL: https://www.nature.com/articles/171737a0 language: en-GB --- bla bla [@WatsonCrick1953, 5] ``` Convert with pandoc inputfile.md -o outputfile.md =E2=80=93citeproc -t markdown-citation= s gives me : ``` --- author: DM date: 18-Jul-2020 references: - author: - family: Watson given: J. D. - family: Crick given: F. H. C. container-title: Nature DOI: 10.1038/171737a0 id: WatsonCrick1953 issue: 4356 issued: date-parts: - - 1953 - 4 - 25 language: en-GB page: 737-738 title: "Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid" title-short: Molecular structure of nucleic acids type: article-journal URL: https://www.nature.com/articles/171737a0 volume: 171 title: Test --- bla bla (Watson and Crick 1953, 5) ::: {#refs .references .csl-bib-body .hanging-indent} ::: {#ref-WatsonCrick1953 .csl-entry} Watson, J. D., and F. H. C. Crick. 1953. "Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid." *Nature* 171 (4356): 737--38. https://doi.org/10.1038/171737a0. ::: ::: ``` Denis Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Im Auftrag v= on denis...-NSENcxR/0n0@public.gmane.org Gesendet: Dienstag, 23. November 2021 15:03 An: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Betreff: AW: Automaticly creating bibliography in md? Not sure, but the xml is your style file. Can only guess since I don=E2=80=99t have your bibfile, but maybe the comma= nd line arguments were a bit messed up : pandoc inputfile.md -o inputfile.md --csl sage-harvard.csl --citeproc -t ma= rkdown-citations Add a =3D between --csl and the style =3D> --csl=3Dsage-harvard.csl Or, can also just omit the style since you have that in your markdown files= anyway. But, if you want the bibliography to appear like in your sublime example, y= ou=E2=80=99ll need to use a filter for this. Denis Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Im Auftrag v= on Alan Gesendet: Dienstag, 23. November 2021 14:09 An: pandoc-discuss Betreff: Re: Automaticly creating bibliography in md? Sure. I noticed that my yaml is missing. The same file, before this command, prod= uce normal pdf and word output Note: sublime.md is the same note I generated auto bibliography in ST On Tuesday, November 23, 2021 at 1:48:33 PM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote: Can you post a real example? Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Im Auftrag v= on Alan Gesendet: Dienstag, 23. November 2021 13:45 An: pandoc-discuss Betreff: Re: Automaticly creating bibliography in md? I am afraid I miss something here. I try the command, ad receive huge xml c= ode in the end + my citation is like this \[@alexanderTheoryCulturalTrauma2004, 1\] > P.S. : Why do you use reference-doc here? You=E2=80=99re converting from = markdown to markdown. My bad, I just copy from my docx command :-) On Tuesday, November 23, 2021 at 10:35:25 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote: Well, IIUC, pandoc works from an input file to an output file. If you have your references in your metadata you can probably just do this = : pandoc inputfile.md -o inputfile.md =E2=80=93csl sage-harvard.csl =E2=80=93= citeproc -t markdown-citations (The important part is `-t markdown-citations`. That=E2=80=99s a big counte= r-intuitive : It does not mean =C2=AB give me a markdown file without citat= ions=C2=BB , but rather =C2=AB give me a markdown file without the citation= s extension, i.e., with citations being resolved =C2=BB.) If that does not work, convert to a temp file first, then rename. You can a= utomate the process with a script or makefile. Denis P.S. : Why do you use reference-doc here? You=E2=80=99re converting from ma= rkdown to markdown. Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Im Auftrag v= on Alan Gesendet: Dienstag, 23. November 2021 10:28 An: pandoc-discuss Betreff: Re: Automaticly creating bibliography in md? I know (and use) this command pandoc --reference-doc my-reference.docx -s text1.md --citeproc --csl sage-= harvard.csl -o text2.md and my bib file is referenced in YAML head. The question is how to achieve to have bibliography in SAME file I am worki= ng with? I have an animated gif in imgur to show the process, but google doesn't let= me post link, message is automatically deleted. On Tuesday, November 23, 2021 at 10:11:59 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote: You will need to specify your reference library, of course. --bibliography=3Dyou_bibfile.bib Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Im Auftrag v= on denis...-NSENcxR/0n0@public.gmane.org Gesendet: Dienstag, 23. November 2021 10:11 An: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Betreff: AW: Automaticly creating bibliography in md? Sure, you can convert from markdown to markdown with resolved citations. pandoc inputfile.md -o outputfile-md -C -t markdown-citations Denis Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Im Auftrag v= on Alan Gesendet: Dienstag, 23. November 2021 10:08 An: pandoc-discuss Betreff: Automaticly creating bibliography in md? Hi, In sublime_zk package for Sublime Text, you can create auto bibliography fr= om citations in document and place it at the end of current .md document. I= s it possible to do that with command or some script, which can be executed= in Windows 10 :-) Thanks -- You received this message because you are subscribed to the Google Groups "= pandoc-discuss" group. 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To view this discussion on the web visit https://groups.google.com/d/msgid/= pandoc-discuss/7181c39d-c239-4a63-bbae-800bc4d8b523n%40googlegroups.com. --=20 You received this message because you are subscribed to the Google Groups "= pandoc-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an e= mail to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To view this discussion on the web visit https://groups.google.com/d/msgid/= pandoc-discuss/bb5a3b682ae748a09280ba75cb8b05c3%40unibe.ch. --_000_bb5a3b682ae748a09280ba75cb8b05c3unibech_ Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable

You mean = wiki-style links [[20200719191401]] being transformed to this: \[\[20200719= 191401\]\]?

&nbs= p;

I don=E2=80=99t have a solution for this.

 

Maybe someone knows how escaping of brackets can be suppressed when g= oing from markdown to markdown ?

 

Denis

&nbs= p;

Von: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 16:14
An: pandoc-discuss <pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org>
Betreff: Re: Automaticly creating bibliography in md?

 

Thank you for your patience Denis.

 

Finally, I have references in file, but... It messed= my zettel links... :-(

I dont care how references look, I just need them at= the end

 

 

On Tuesday, November 23, 2021 at 3:09:05 PM UTC+= 1 denis...-NSENcxR/0n0@public.gmane.org wrote:

Ok. Take this input file:

 

```

---

author: DM

title: Test

date: 18-Jul-2020

references:

- type: article-journal

  id: WatsonCrick1953

  author:

  - family: Watson

    given: J. D.

  - family: Crick

    given: F. H. C.

  issued:

    date-parts:

    - - 1953=

      - 4

      - 25

  title: 'Molecular structure of nucleic= acids: a structure for

    deoxyribose nucleic acid'<= /span>

  title-short: Molecular structure of nu= cleic acids

  container-title: Nature

  volume: 171

  issue: 4356

  page: 737-738

  DOI: 10.1038/171737a0

  URL: https://www.nature.com/articles/171737a0=

  language: en-GB

---

 

bla bla  [@WatsonCrick1953, 5]

```

 

Convert with

pandoc inputfile.md -o outputfile.md =E2=80= =93citeproc -t markdown-citations

gives me :

 

```

---

author: DM

date: 18-Jul-2020

references:

- author:

  - family: Watson

    given: J. D.

  - family: Crick

    given: F. H. C.

  container-title: Nature

  DOI: 10.1038/171737a0

  id: WatsonCrick1953<= /p>

  issue: 4356

  issued:

    date-parts:

    - - 1953=

      - 4

      - 25

  language: en-GB

  page: 737-738

  title: "Molecular structure of nu= cleic acids: a structure for

    deoxyribose nucleic acid&q= uot;

  title-short: Molecular structure of nu= cleic acids

  type: article-journal

  URL: http= s://www.nature.com/articles/171737a0

  volume: 171

title: Test

---

 

bla bla (Watson and Crick 1953, 5)

 

::: {#refs .references .csl-bib-body .hanging-indent}

::: {#ref-WatsonCrick1953 .csl-entry}

Watson, J. D., and F. H. C. Crick. 1953. "Molecular Structure of Nucleic=

Acids: A Structure for Deoxyribose Nucleic Ac= id." *Nature* 171 (4356):

737--38. https://doi.= org/10.1038/171737a0.

:::

:::

```

 

Denis

 

 

Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von denis...-NSENcxR/0n0@public.gmane.org=
Gesendet: Dienstag, 23. November 2021 15:03
An: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org<= br> Betreff: AW: Automaticly creating bibliography in md?

 

Not sure, but the xml is your style file.

Can only guess since I don=E2=80=99t have you= r bibfile, but maybe the command line arguments were a bit messed up :=

pandoc inputfile.md -o inputfile.md --csl sag= e-harvard.csl --citeproc -t markdown-citations

Add a =3D between --csl and the style =3D>= --csl=3Dsage-harvard.csl

Or, can also just omit the style since you ha= ve that in your markdown files anyway.

 

But, if you want the bibliography to appear l= ike in your sublime example, you=E2=80=99ll need to use a filter for this.<= /span>

 

Denis

 

 

Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 14:09
An: pandoc-discuss <pandoc-...@googl= egroups.com>
Betreff: Re: Automaticly creating bibliography in md?

 

 

Sure.

I noticed that my yaml is missing. The same file, before this comm= and, produce normal pdf and word output

 

Note: sublime.md is the same note I generated auto bibliography in= ST

On Tuesday, November 23, 2021 at 1:48:33 PM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:

Can you post a real example?

 

Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 13:45
An: pandoc-discuss <pandoc-...@googl= egroups.com>
Betreff: Re: Automaticly creating bibliography in md?

 

I am afraid I miss something here. I try the command, ad receive h= uge xml code in the end + my citation is like this

 

\[@alexanderTheoryCulturalTrauma2004, 1\]

 

> P.S. : Why do you use reference-doc here? You=E2=80=99re= converting from markdown to markdown.

My bad, I just copy from my docx command :-)

 

On Tuesday, November 23, 2021 at 10:35:25 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:

Well, IIUC, pandoc works from an input file to an output file.

If you have your references in your metadata = you can probably just do this :

 

pandoc inputfile.md -o inputfile.md =E2=80=93= csl sage-harvard.csl =E2=80=93citeproc -t markdown-citations

 

(The important part is `-t markdown-citations= `. That=E2=80=99s a big counter-intuitive : It does not mean =C2=AB&nb= sp;give me a markdown file without citations=C2=BB , but rather =C2=AB = ;give me a markdown file without the citations extension, i.e., with citations b= eing resolved =C2=BB.)

 

If that does not work, convert to a temp file= first, then rename. You can automate the process with a script or makefile= .

 

Denis

 

P.S. : Why do you use reference-doc here? You=E2=80=99re conv= erting from markdown to markdown.

 

 

Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 10:28
An: pandoc-discuss <pandoc-...@googl= egroups.com>
Betreff: Re: Automaticly creating bibliography in md?

 

I know (and use) this command

 

pandoc --reference-doc my-reference.docx -s text1.md --citeproc --= csl sage-harvard.csl -o text2.md

 

and my bib file is referenced in YAML head.

The question is how to achieve to have bibliography in SAME file I= am working with?

I have an animated gif in imgur to show the process, but google do= esn't let me post link, message is automatically deleted.

 

On Tuesday, November 23, 2021 at 10:11:59 AM UTC+1 denis...-NSENcxR/0n0@public.gmane.org wrote:

You will need to specify your reference libra= ry, of course.

--bibliography=3Dyou_bibfile.bib<= /o:p>

 

Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von denis...-NSENcxR/0n0@public.gmane.org=
Gesendet: Dienstag, 23. November 2021 10:11
An: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org<= br> Betreff: AW: Automaticly creating bibliography in md?

 

Sure, you can convert from markdown to markdo= wn with resolved citations.

 

pandoc inputfile.md -o outputfile-md -C -t ma= rkdown-citations

 

Denis

 

Von: pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org <pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> Im Auftrag von Alan
Gesendet: Dienstag, 23. November 2021 10:08
An: pandoc-discuss <pandoc-...@googl= egroups.com>
Betreff: Automaticly creating bibliography in md?<= /p>

 

Hi,

In sublime_zk package for Sublime Text, you can create auto biblio= graphy from citations in document and place it at the end of current .md do= cument. Is it possible to do that with command or some script, which can be executed in Windows 10 :-)=

Thanks

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