I have a folder called Project:

Project:
img docs README 

The README is written in Markdown and looks like this:
document 1 
     document 1.1
document 2 
     document 2.1 
           document 2.1.1 

The readme has links to the individual Markdown files. The file structure 
in the document folder looks like this:
Document 1 
Document 2 
Document 11 
Document 21 
Document 211 

The documents have images that come from the img folder and have cross 
references to each other e.g. Document 1 has a reference to Document 11.

How can I use a pandoc command to convert the documents as they appear in 
order in the README to a DOCX file, with the corresponding images and the 
cross references in the respective Markdown files. Is there a suitable 
script with pandoc for this?

I had it once with the pandoc command:
for /r "." %i in (*.md) do pandoc -o "%~i.docx" "%~i" 

All files in the docs folder were converted to a DOCX file and merged, but 
the order was completely wrong and the cross references were to the 
Markdown files from the docs folder and not from the created DOCX file.

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