From mboxrd@z Thu Jan 1 00:00:00 1970 X-Msuck: nntp://news.gmane.io/gmane.text.pandoc/11425 Path: news.gmane.org!not-for-mail From: nickbart1980-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org Newsgroups: gmane.text.pandoc Subject: Re: Word document with Endnote references to latex Date: Sat, 6 Dec 2014 04:58:07 -0800 (PST) Message-ID: References: <3ee6112f-4e06-480c-ad39-008de30734d9@googlegroups.com> <6b0c01b6-a9f9-4279-a794-72626973ca72@googlegroups.com> Reply-To: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org NNTP-Posting-Host: plane.gmane.org Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="----=_Part_2638_639106753.1417870687121" X-Trace: ger.gmane.org 1417870693 20876 80.91.229.3 (6 Dec 2014 12:58:13 GMT) X-Complaints-To: usenet@ger.gmane.org NNTP-Posting-Date: Sat, 6 Dec 2014 12:58:13 +0000 (UTC) To: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Original-X-From: pandoc-discuss+bncBDIPX6WQ4INBBX72ROSAKGQER7GXBVY-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Sat Dec 06 13:58:09 2014 Return-path: Envelope-to: gtp-pandoc-discuss@m.gmane.org Original-Received: from mail-oi0-f58.google.com ([209.85.218.58]) by plane.gmane.org with esmtp (Exim 4.69) (envelope-from ) id 1XxEw4-0003kE-Pf for gtp-pandoc-discuss@m.gmane.org; Sat, 06 Dec 2014 13:58:09 +0100 Original-Received: by mail-oi0-f58.google.com with SMTP id i138sf338309oig.23 for ; Sat, 06 Dec 2014 04:58:08 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=googlegroups.com; s=20120806; h=date:from:to:message-id:in-reply-to:references:subject:mime-version :content-type:x-original-sender:reply-to:precedence:mailing-list :list-id:list-post:list-help:list-archive:sender:list-subscribe :list-unsubscribe; bh=TgfPU0IL4S+6PNJHRewrah8V9TL6usM8xRdbC+vaZcU=; b=BkoVBbUikft4I3S6+Q2zLAn8PCSnsgC5XQOCnmpEW4rbE0XmTeKgEyZelnnuyxB9vl NsnVNHl7pg7laSbJ1yeD2kWWhfQMI5y6dxdrR3aAM+Oo6sZGmGmVbfIGkeioSkbDYVyZ pC8tZQ2tJH+eLOq4mwQu3knIlmFRhZgwLxOv5cQIVyg57BgEaZX3rHHMTQfw1DK56N3u tn0rwe6Kx9TTF3kNhS3R5NK48VsALKKgki4GW4cP6k91b6mkSsgZj0Enhp4zJLNbGEAO kkFWNqC6aUQPi1Y2rOQ3Fq1Jg8LMyBSyQ42uIm5JBE0WYE52TowTsM0HMva+sJ0XBW49 nO7g== DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=date:from:to:message-id:in-reply-to:references:subject:mime-version :content-type:x-original-sender:reply-to:precedence:mailing-list :list-id:list-post:list-help:list-archive:sender:list-subscribe :list-unsubscribe; bh=TgfPU0IL4S+6PNJHRewrah8V9TL6usM8xRdbC+vaZcU=; b=SHb4elF1VSLc/zO9IfbZ34aRbFIpZDV+MZL8I17ea6re/JBYDumD2j3L1AhUA83mzP nNusNPvrVnO77zeaA6fNfUj1b6Dmy/X9nh2ZFplEOVrPI0Lcubh4lWDT5eF2UW3+rPWI 39Rd7UBNtChUf6+WvACHJNrlD+jhJZjSPz62SamvPrmmGUZCZR/O6p/h1ifdiEScV7ty kiqX1WI/dMZNmUKL+DEwkqUl9MeDWJpf7oppG5wwFyZWrG8pjkri2jGesJKh94y8C6YZ 3Zsr+YWtS5Yt/RcKRH5H+dXIpew9aDmfNPLUqXXu+Zm7+v0ECtiR8FgR7TZiGp5C9xXZ nmjQ== X-Received: by 10.140.33.229 with SMTP id j92mr37993qgj.7.1417870688175; Sat, 06 Dec 2014 04:58:08 -0800 (PST) X-BeenThere: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Original-Received: by 10.140.34.135 with SMTP id l7ls1921367qgl.20.gmail; Sat, 06 Dec 2014 04:58:07 -0800 (PST) X-Received: by 10.140.33.229 with SMTP id j92mr37992qgj.7.1417870687687; Sat, 06 Dec 2014 04:58:07 -0800 (PST) In-Reply-To: <6b0c01b6-a9f9-4279-a794-72626973ca72-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> X-Original-Sender: nickbart1980-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org Precedence: list Mailing-list: list pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org; contact pandoc-discuss+owners-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org List-ID: X-Google-Group-Id: 1007024079513 List-Post: , List-Help: , List-Archive: , List-Unsubscribe: , Xref: news.gmane.org gmane.text.pandoc:11425 Archived-At: ------=_Part_2638_639106753.1417870687121 Content-Type: multipart/alternative; boundary="----=_Part_2639_1901479024.1417870687121" ------=_Part_2639_1901479024.1417870687121 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Sorry, the last command line should of course read=20 pandoc Thesis.tex -s -o Thesis.docx --bibliography=3Dyourendnotefile.enl=20 --csl=3Dvancouver.csl if you want to generate, e.g, a docx file from your Thesis.tex containing= =20 `\citep{}`s. On Saturday, December 6, 2014 12:49:50 PM UTC, nickba...-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org wrote: > > > I think there might be specific endnote -> bibtex conversion tools =E2= =80=A6 > > bibutils is one such program, and pandoc-citeproc uses this under the hoo= d=20 > to convert RIS, EndNote, EndNote XML, ISI, MEDLINE, and Copac to MODS whi= ch=20 > pandoc-citeproc can parse. > > For an Endnote file, try: > > `end2xml yourendnotefile.enl | xml2bib > yourbibfile.bib` > > or for an EndNote XML file: > > `endx2xml yourendnotefile.xml | xml2bib > yourbibfile.bib` > > You could also try using your EndNote file directly: > > pandoc Thesis.docx -s -o Thesis.tex --bibliography=3Dyourendnotefile.enl= =20 > --csl=3Dvancouver.csl > > In any case you will have to replace all references of the type=20 > `\hyperref[ux5fENREFux5f1]` by an appropriate `\citep{bibTexKey}` in your= =20 > latex source file. (Use `\citep{}` instead of `\cite{}` if you want numbe= rs=20 > such as "(1)" as in-text citations.) > > > On Friday, 5 December 2014 22:08:13 UTC, Matthew Pickering wrote: >> >> I think there might be specific endnote -> bibtex conversion tools as=20 >> well which would probably work better.=20 >> >> On Fri, Dec 5, 2014 at 9:51 PM, Mark Szepieniec =20 >> wrote:=20 >> > Pandoc is just seeing your citations as internal hyperlinks (to the=20 >> > respective references), it just read your reference list as text, and= =20 >> > doesn't realize they are actually references. You will need to convert= =20 >> your=20 >> > references to bibtex form, either manually, or with the tool Matthew= =20 >> > mentioned.=20 >> >=20 >> > The transformation of \hyperrefs into \cites could be done with a=20 >> pandoc=20 >> > filter (if you can code python or haskell), or you could do a search= =20 >> and=20 >> > replace in your text editor.=20 >> >=20 >> >=20 >> >=20 >> > On Fri, Dec 5, 2014 at 10:41 PM, BerndB wrote:=20 >> >>=20 >> >> Okay... I used pandoc and could create a file looking like a LaTex=20 >> file=20 >> >> which also compiles.=20 >> >>=20 >> >> pandoc Thesis.docx -s -o Thesis.tex=20 >> >>=20 >> >> =3D=3D=3D=3D The compiled PDF file=20 >> >>=20 >> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=20 >> >> >>=20 >> >> On the first look, it is impressive. Looks like I would need it.=20 >> However,=20 >> >> I do not understand how the literature references are transformed. In= =20 >> fact,=20 >> >> I would need something like an additional bibliography output.=20 >> >>=20 >> >> =3D=3D=3D Inside the .tex file=20 >> >>=20 >> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=20 >> >> >>=20 >> >> Looking into the .tex file, [1] has been replaced by=20 >> >> "{[}\hyperref[ux5fENREFux5f1]{1}{]}" which obviously corresponds to= =20 >> the=20 >> >> following entry at the end of the document:=20 >> >>=20 >> >> "References=20 >> >>=20 >> >> \hyperdef{}{ux5fENREFux5f1}{}{}1. Ogawa J, Shimizu S: Microbial=20 >> enzymes:=20 >> >> new industrial applications from traditional screening methods. Trend= s=20 >> >> in biotechnology 1999, 17:13-21."=20 >> >>=20 >> >>=20 >> >>=20 >> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=20 >> >> >>=20 >> >> So, I am pretty close. But I would need \cite{bibTexKey} instead of= =20 >> >> \hyperref[ux5fENREFux5f1], and I would need to access an extra=20 >> bibliography=20 >> >> file, such that I can change the references in the .tex file=20 >> afterwards.=20 >> >> .=20 >> >>=20 >> >> On Friday, December 5, 2014 10:20:08 PM UTC+1, Mark Szepieniec wrote:= =20 >> >>>=20 >> >>> I think Matthew means that the tool he linked to does a good job of= =20 >> >>> transforming text such as=20 >> >>>=20 >> >>> Watscon JD, Crick F, "Molecular Structure of Nucleic Acids: A=20 >> Structure=20 >> >>> for Deoxyribose Nucleic Acid", Nature (1953)=20 >> >>>=20 >> >>> into a structured reference that latex can work with. However, one= =20 >> would=20 >> >>> then still need to manually change each instance of "[1]" in the=20 >> original=20 >> >>> document to "\cite{watsoncrick}", or something similar.=20 >> >>>=20 >> >>> In your case, if I understand correctly, your references would also= =20 >> have=20 >> >>> to be transformed from EndNote's format to bibtex (Latex's format).= =20 >> This is=20 >> >>> not something that pandoc can do.=20 >> >>>=20 >> >>> On Fri, Dec 5, 2014 at 9:11 PM, BerndB wrote:=20 >> >>>>=20 >> >>>> Hi, thanks for trying to help! ;)=20 >> >>>>=20 >> >>>> But I do not understand what you mean with "manually".=20 >> >>>>=20 >> >>>> I maintained and included references with Endnote. It is a referenc= e=20 >> >>>> manager for Word.=20 >> >>>>=20 >> >>>> On Friday, December 5, 2014 9:07:10 PM UTC+1, Matthew Pickering=20 >> wrote:=20 >> >>>>>=20 >> >>>>> If you have manually typed out the references then I don't think= =20 >> there=20 >> >>>>> is. I had success using this tool to convert[1] references to a=20 >> more=20 >> >>>>> suitable format but I had to manually update all the citation=20 >> points=20 >> >>>>> obviously.=20 >> >>>>>=20 >> >>>>> [1]: http://text2bib.economics.utoronto.ca/=20 >> >>>>>=20 >> >>>>> On Fri, Dec 5, 2014 at 7:51 PM, BerndB wrote:= =20 >> >>>>> > Hello,=20 >> >>>>> >=20 >> >>>>> > I have a huge Word document with about 100 references that I=20 >> included=20 >> >>>>> > with=20 >> >>>>> > Endnote. (I started with Word to maintain comment bubbles for th= e=20 >> >>>>> > references=20 >> >>>>> > and to use track changes. However, I would now prefer to have th= e=20 >> >>>>> > final=20 >> >>>>> > version as a latex document to apply to the common standards.)= =20 >> >>>>> >=20 >> >>>>> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=20 >> >>>>> > Example=20 >> >>>>> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=20 >> >>>>> > Somewhere in the text: Genes are coded in the DNA of an organism= =20 >> [1].=20 >> >>>>> >=20 >> >>>>> > (...)=20 >> >>>>> >=20 >> >>>>> > References (at the end of the document): 1. Watscon JD, Crick F,= =20 >> >>>>> > "Molecular=20 >> >>>>> > Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic= =20 >> >>>>> > Acid",=20 >> >>>>> > Nature (1953)=20 >> >>>>> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=20 >> >>>>> >=20 >> >>>>> > Is there any possibility to convert the Word file into a LaTex= =20 >> file=20 >> >>>>> > (while=20 >> >>>>> > also transforming the references into proper LaTex references)?= =20 >> >>>>> >=20 >> >>>>> > How would I do it with pandoc?=20 >> >>>>> >=20 >> >>>>> > --=20 >> >>>>> > You received this message because you are subscribed to the=20 >> Google=20 >> >>>>> > Groups=20 >> >>>>> > "pandoc-discuss" group.=20 >> >>>>> > To unsubscribe from this group and stop receiving emails from it= ,=20 >> >>>>> > send an=20 >> >>>>> > email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org=20 >> >>>>> > To post to this group, send email to pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org= .=20 >> >> >>>>> > To view this discussion on the web visit=20 >> >>>>> >=20 >> >>>>> >=20 >> https://groups.google.com/d/msgid/pandoc-discuss/e00e6fe3-0102-4888-b1a1= -9da10fe1f6b4%40googlegroups.com.=20 >> >> >>>>> > For more options, visit https://groups.google.com/d/optout.=20 >> >>>>=20 >> >>>> --=20 >> >>>> You received this message because you are subscribed to the Google= =20 >> >>>> Groups "pandoc-discuss" group.=20 >> >>>> To unsubscribe from this group and stop receiving emails from it,= =20 >> send=20 >> >>>> an email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org=20 >> >>>> To post to this group, send email to pandoc-...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org= =20 >> >>>> To view this discussion on the web visit=20 >> >>>>=20 >> https://groups.google.com/d/msgid/pandoc-discuss/3ee6112f-4e06-480c-ad39= -008de30734d9%40googlegroups.com.=20 >> >> >>>>=20 >> >>>> For more options, visit https://groups.google.com/d/optout.=20 >> >>>=20 >> >>>=20 >> >> --=20 >> >> You received this message because you are subscribed to the Google=20 >> Groups=20 >> >> "pandoc-discuss" group.=20 >> >> To unsubscribe from this group and stop receiving emails from it, sen= d=20 >> an=20 >> >> email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org=20 >> >> To post to this group, send email to pandoc-...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org=20 >> >> To view this discussion on the web visit=20 >> >>=20 >> https://groups.google.com/d/msgid/pandoc-discuss/b2730c9c-d8a2-4bee-888c= -3e7a19b8bd28%40googlegroups.com.=20 >> >> >>=20 >> >> For more options, visit https://groups.google.com/d/optout.=20 >> >=20 >> >=20 >> > --=20 >> > You received this message because you are subscribed to the Google=20 >> Groups=20 >> > "pandoc-discuss" group.=20 >> > To unsubscribe from this group and stop receiving emails from it, send= =20 >> an=20 >> > email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org=20 >> > To post to this group, send email to pandoc-...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org=20 >> > To view this discussion on the web visit=20 >> >=20 >> https://groups.google.com/d/msgid/pandoc-discuss/CAE4-1rWDn7OewemXC7r8gK= Vm%3DOSagH1cy0PQm7knwti7yUwQ%3Dg%40mail.gmail.com.=20 >> >> >=20 >> > For more options, visit https://groups.google.com/d/optout.=20 >> > --=20 You received this message because you are subscribed to the Google Groups "= pandoc-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an e= mail to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To post to this group, send email to pandoc-discuss-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To view this discussion on the web visit https://groups.google.com/d/msgid/= pandoc-discuss/e5a43a6a-938e-479c-bced-ffefcef6d1aa%40googlegroups.com. For more options, visit https://groups.google.com/d/optout. ------=_Part_2639_1901479024.1417870687121 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Sorry, the last command line should of course read
pandoc Thesis.tex -s -o Thesis.docx --bibliography=3Dyourendnotefile.enl -= -csl=3Dvancouver.csl

if you want to generate, e.g, a docx file from = your Thesis.tex containing `\citep{}`s.

On Saturday, December 6, 201= 4 12:49:50 PM UTC, nickba...-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org wrote:
> I think there might be specific endnot= e -> bibtex conversion tools =E2=80=A6

bibutils is one such progr= am, and pandoc-citeproc uses this under the hood to convert RIS, EndNote, E= ndNote XML, ISI, MEDLINE, and Copac to MODS which pandoc-citeproc can parse= .

For an Endnote file, try:

`end2xml yourendnotefile.enl | xm= l2bib > yourbibfile.bib`

or for an EndNote XML file:

`endx= 2xml yourendnotefile.xml | xml2bib > yourbibfile.bib`

You could a= lso try using your EndNote file directly:

pandoc Thesis.docx -s -o T= hesis.tex --bibliography=3Dyourendnotefile.enl --csl=3Dvancouver.csl
In any case you will have to replace all references of the type `\hyp= erref[ux5fENREFux5f1]` by an appropriate `\citep{bibTexKey}` in your latex = source file. (Use `\citep{}` instead of `\cite{}` if you want numbers such = as "(1)" as in-text citations.)


On Friday, 5 December 2014 22:08= :13 UTC, Matthew Pickering wrote:
I think there might be specific endnote -> bibtex conversion tools as
well which would probably work better.

On Fri, Dec 5, 2014 at 9:51 PM, Mark Szepieniec <msze...-Re5JQEeQqe8@public.gmane.org= m> wrote:
> Pandoc is just seeing your citations as internal hyperlinks (to th= e
> respective references), it just read your reference list as text, = and
> doesn't realize they are actually references. You will need to con= vert your
> references to bibtex form, either manually, or with the tool Matth= ew
> mentioned.
>
> The transformation of \hyperrefs into \cites could be done with a = pandoc
> filter (if you can code python or haskell), or you could do a sear= ch and
> replace in your text editor.
>
>
>
> On Fri, Dec 5, 2014 at 10:41 PM, BerndB <skon...-Re5JQEeQqe8AvxtiuMwx3w@public.gmane.org> wrote:
>>
>> Okay... I used pandoc and could create a file looking like a L= aTex file
>> which also compiles.
>>
>> pandoc Thesis.docx -s -o Thesis.tex
>>
>> =3D=3D=3D=3D The compiled PDF file
>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
>>
>> On the first look, it is impressive. Looks like I would need i= t. However,
>> I do not understand how the literature references are transfor= med. In fact,
>> I would need something like an additional bibliography output.
>>
>> =3D=3D=3D Inside the .tex file
>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
>>
>> Looking into the .tex file, [1] has been replaced by
>> "{[}\hyperref[ux5fENREFux5f1]{1}{]}" which obviously corr= esponds to the
>> following entry at the end of the document:
>>
>> "References
>>
>> \hyperdef{}{ux5fENREFux5f1}{}{}1. Ogawa J, Shimizu S: Mic= robial enzymes:
>> new industrial applications from traditional screening methods= . Trends
>> in biotechnology 1999, 17:13-21."
>>
>>
>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D
>>
>> So, I am pretty close. But I would need \cite{bibTexKey} inste= ad of
>> \hyperref[ux5fENREFux5f1], and I would need to access an extra= bibliography
>> file, such that I can change the references in the .tex file a= fterwards.
>> .
>>
>> On Friday, December 5, 2014 10:20:08 PM UTC+1, Mark Szepieniec= wrote:
>>>
>>> I think Matthew means that the tool he linked to does a go= od job of
>>> transforming text such as
>>>
>>> Watscon JD, Crick F, "Molecular Structure of Nucleic Acids= : A Structure
>>> for Deoxyribose Nucleic Acid", Nature (1953)
>>>
>>> into a structured reference that latex can work with. Howe= ver, one would
>>> then still need to manually change each instance of "[1]" = in the original
>>> document to "\cite{watsoncrick}", or something similar.
>>>
>>> In your case, if I understand correctly, your references w= ould also have
>>> to be transformed from EndNote's format to bibtex (Latex's= format). This is
>>> not something that pandoc can do.
>>>
>>> On Fri, Dec 5, 2014 at 9:11 PM, BerndB <skon...@gmai= l.com> wrote:
>>>>
>>>> Hi, thanks for trying to help! ;)
>>>>
>>>> But I do not understand what you mean with "manually".
>>>>
>>>> I maintained and included references with Endnote. It = is a reference
>>>> manager for Word.
>>>>
>>>> On Friday, December 5, 2014 9:07:10 PM UTC+1, Matthew = Pickering wrote:
>>>>>
>>>>> If you have manually typed out the references then= I don't think there
>>>>> is. I had success using this tool to convert[1] re= ferences to a more
>>>>> suitable format but I had to manually update all t= he citation points
>>>>> obviously.
>>>>>
>>>>> [1]: http://text2bib.economics.utoronto.ca/
>>>>>
>>>>> On Fri, Dec 5, 2014 at 7:51 PM, BerndB <skon= ...@gmail.com> wrote:
>>>>> > Hello,
>>>>> >
>>>>> > I have a huge Word document with about 100 re= ferences that I included
>>>>> > with
>>>>> > Endnote. (I started with Word to maintain com= ment bubbles for the
>>>>> > references
>>>>> > and to use track changes. However, I would no= w prefer to have the
>>>>> > final
>>>>> > version as a latex document to apply to the c= ommon standards.)
>>>>> >
>>>>> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
>>>>> > Example
>>>>> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
>>>>> > Somewhere in the text: Genes are coded in the= DNA of an organism [1].
>>>>> >
>>>>> > (...)
>>>>> >
>>>>> > References (at the end of the document): 1. W= atscon JD, Crick F,
>>>>> > "Molecular
>>>>> > Structure of Nucleic Acids: A Structure for D= eoxyribose Nucleic
>>>>> > Acid",
>>>>> > Nature (1953)
>>>>> > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D
>>>>> >
>>>>> > Is there any possibility to convert the Word = file into a LaTex file
>>>>> > (while
>>>>> > also transforming the references into proper = LaTex references)?
>>>>> >
>>>>> > How would I do it with pandoc?
>>>>> >
>>>>> > --
>>>>> > You received this message because you are sub= scribed to the Google
>>>>> > Groups
>>>>> > "pandoc-discuss" group.
>>>>> > To unsubscribe from this group and stop recei= ving emails from it,
>>>>> > send an
>>>>> > email to pandoc-discus...@googlegroups.com.
>>>>> > To post to this group, send email to pando= c-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org.
>>>>> > To view this discussion on the web visit
>>>>> >
>>>>> > https://groups.google.com/d/msgid/pandoc-discuss/e00e6fe3-= 0102-4888-b1a1-9da10fe1f6b4%40googlegroups.com.
>>>>> > For more options, visit https://groups.google.com/d/<= wbr>optout.
>>>>
>>>> --
>>>> You received this message because you are subscribed t= o the Google
>>>> Groups "pandoc-discuss" group.
>>>> To unsubscribe from this group and stop receiving emai= ls from it, send
>>>> an email to pandoc-discus...@googlegroups.com<= /a>.
>>>> To post to this group, send email to pandoc-...@goo= glegroups.com.
>>>> To view this discussion on the web visit
>>>> ht= tps://groups.google.com/d/msgid/pandoc-discuss/3ee6112f-4e06-480c= -ad39-008de30734d9%40googlegroups.com.
>>>>
>>>> For more options, visit https://groups.google.com/d/optou= t.
>>>
>>>
>> --
>> You received this message because you are subscribed to the Go= ogle Groups
>> "pandoc-discuss" group.
>> To unsubscribe from this group and stop receiving emails from = it, send an
>> email to pandoc-discus...@googlegroups.com.
>> To post to this group, send email to pandoc-...@googlegroup= s.com.
>> To view this discussion on the web visit
>> https://gr= oups.google.com/d/msgid/pandoc-discuss/b2730c9c-d8a2-4bee-888c-3e= 7a19b8bd28%40googlegroups.com.
>>
>> For more options, visit https://groups.google.com/d/optout.
>
>
> --
> You received this message because you are subscribed to the Google= Groups
> "pandoc-discuss" group.
> To unsubscribe from this group and stop receiving emails from it, = send an
> email to pandoc-discus...@googlegroups.com.
> To post to this group, send email to pandoc-...-/JYPxA39Uh4Ykp1iOSErHA@public.gmane.org= m.
> To view this discussion on the web visit
> https://groups.google.com/d/msgi= d/pandoc-discuss/CAE4-1rWDn7OewemXC7r8gKVm%3DOSagH1cy0PQm7knwti7y= UwQ%3Dg%40mail.gmail.com.
>
> For more options, visit https://groups.google.com/d/optout.

--
You received this message because you are subscribed to the Google Groups &= quot;pandoc-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an e= mail to pand= oc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org.
To post to this group, send email to pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org.
To view this discussion on the web visit https://groups.google.com/d/= msgid/pandoc-discuss/e5a43a6a-938e-479c-bced-ffefcef6d1aa%40googlegroups.co= m.
For more options, visit http= s://groups.google.com/d/optout.
------=_Part_2639_1901479024.1417870687121-- ------=_Part_2638_639106753.1417870687121--