From mboxrd@z Thu Jan 1 00:00:00 1970 X-Msuck: nntp://news.gmane.io/gmane.text.pandoc/28483 Path: news.gmane.io!.POSTED.blaine.gmane.org!not-for-mail From: John MacFarlane Newsgroups: gmane.text.pandoc Subject: Re: Pandoc stopped rendering tables and contents from the YAML block Date: Fri, 28 May 2021 09:27:29 -0700 Message-ID: References: <1abeeca5-7362-441d-907a-08df53958b28n@googlegroups.com> <932560f4-7866-4fd4-90e7-4797e23fab20n@googlegroups.com> <74450a6b-43ad-4780-90d6-80f51c203f1fn@googlegroups.com> Reply-To: pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Mime-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable Injection-Info: ciao.gmane.io; posting-host="blaine.gmane.org:116.202.254.214"; logging-data="7212"; mail-complaints-to="usenet@ciao.gmane.io" To: Julio Vera , pandoc-discuss Original-X-From: pandoc-discuss+bncBCJZJHG45QDBB75TYSCQMGQEHOFTI3Y-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org Fri May 28 18:27:46 2021 Return-path: Envelope-to: gtp-pandoc-discuss@m.gmane-mx.org Original-Received: from mail-pg1-f185.google.com ([209.85.215.185]) by ciao.gmane.io with esmtps (TLS1.3:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.92) (envelope-from ) id 1lmfKs-0001j6-3R for gtp-pandoc-discuss@m.gmane-mx.org; 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[74.82.3.134]) by smtp.gmail.com with ESMTPSA id l20sm4510508pjq.38.2021.05.28.09.27.40 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 28 May 2021 09:27:40 -0700 (PDT) Original-Received: by johnmacfarlane.net (Postfix, from userid 1000) id 354D7A2A1; Fri, 28 May 2021 12:27:29 -0400 (EDT) In-Reply-To: <74450a6b-43ad-4780-90d6-80f51c203f1fn-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> X-Original-Sender: jgm-TVLZxgkOlNX2fBVCVOL8/A@public.gmane.org X-Original-Authentication-Results: gmr-mx.google.com; dkim=pass header.i=@berkeley-edu.20150623.gappssmtp.com header.s=20150623 header.b=Rp5Xx3Y8; spf=pass (google.com: domain of jgm-TVLZxgkOlNX2fBVCVOL8/A@public.gmane.org designates 2607:f8b0:4864:20::1032 as permitted sender) smtp.mailfrom=jgm-TVLZxgkOlNX2fBVCVOL8/A@public.gmane.org Precedence: list Mailing-list: list pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org; contact pandoc-discuss+owners-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org List-ID: X-Google-Group-Id: 1007024079513 List-Post: , List-Help: , List-Archive: , List-Unsubscribe: , Xref: news.gmane.io gmane.text.pandoc:28483 Archived-At: You're not expected to create them. Pandoc works fine without them. But if you did have them, it could be implicitly using a reference-doc defined there, so I wanted to rule that out. Well, I can't reproduce your issue or think of anything that could be causing it. Please use pandoc --version and be sure you're running the latest version (2.13). Julio Vera writes: > I never created this folder ~/.pandoc or this one ~/.local/share/pandoc. = I=20 > made a quick google search and found that I was expected to create those= =20 > directories, I never found the guidelines in the documentation tho. So=20 > answering your question, I don't have a reference.docx because I haven't= =20 > created those directories. > > thank you > > El jueves, 27 de mayo de 2021 a las 16:16:27 UTC-5, John MacFarlane=20 > escribi=C3=B3: > >> >> Do you have a folder ~/.pandoc or ~/.local/share/pandoc that >> contains reference.docx? >> >> Julio Vera writes: >> >> > Hi! I don't understand what about the "reference.docx", but in my fold= er=20 >> > where I have the .md file I only have another .pdf file.=20 >> > >> > The command I use is: pandoc pxdxcomp.md -o pxdxcomp.docx >> > El jueves, 27 de mayo de 2021 a las 14:04:36 UTC-5, John MacFarlane=20 >> > escribi=C3=B3: >> > >> >> Also, please let us know the full command you are using to >> >> convert (including any options). >> >> >> >> John MacFarlane writes: >> >> >> >> > Make sure you don't have a reference.docx in your user data >> >> > directory. >> >> > >> >> > Julio Vera writes: >> >> > >> >> >> The latest one available in pandoc.org, I ran the script to=20 >> uninstall=20 >> >> it=20 >> >> >> and then downloaded it again for macOS.=20 >> >> >> >> >> >> I tested again with this file (prueba.md) that I created just to s= ee=20 >> if=20 >> >> it=20 >> >> >> woks with new files but I got the same result. >> >> >> >> >> >> [image: Captura de Pantalla 2021-05-27 a la(s) 12.54.14.png] >> >> >> However, when I convert the dxprevcovid19.md to .docx the table=20 >> there=20 >> >> >> renders fine.=20 >> >> >> >> >> >> El jueves, 27 de mayo de 2021 a las 12:49:09 UTC-5, John MacFarlan= e=20 >> >> >> escribi=C3=B3: >> >> >> >> >> >>> >> >> >>> That's very strange -- it looks like it is using extremely narrow >> >> >>> columns. But I can't reproduce this with latest pandoc. It >> >> >>> looks fine. What version are you using? >> >> >>> >> >> >>> Julio Vera writes: >> >> >>> >> >> >>> > [image: Captura de Pantalla 2021-05-27 a la(s) 12.27.20.png] >> >> >>> > >> >> >>> > Corrected it, but the tables are still not rendering. That's ho= w=20 >> I=20 >> >> see=20 >> >> >>> the=20 >> >> >>> > tables inside the docx just for that file (pxdxcomp.md), when I= =20 >> >> convert=20 >> >> >>> it=20 >> >> >>> > to pdf they render fine.=20 >> >> >>> > >> >> >>> > El jueves, 27 de mayo de 2021 a las 12:17:28 UTC-5, John=20 >> MacFarlane=20 >> >> >>> > escribi=C3=B3: >> >> >>> > >> >> >>> >> >> >> >>> >> Looks like you've got four ---- instead of three --- under the >> >> >>> >> YAML metadata block. >> >> >>> >> >> >> >>> >> >> >> >>> >> Julio Vera writes: >> >> >>> >> >> >> >>> >> > Hi!=20 >> >> >>> >> > >> >> >>> >> > I attached 2 files. The one that I can't convert correctly i= s=20 >> >> >>> >> pxdxcomp.md,=20 >> >> >>> >> > the other one (dxprevcovid) I tried to convert it and had no= =20 >> >> issue.=20 >> >> >>> The=20 >> >> >>> >> > language of my work is in Spanish, I hope it isn't an issue= =20 >> here.=20 >> >> I=20 >> >> >>> >> tried=20 >> >> >>> >> > copying everything and pasting it inside a new file but stil= l=20 >> >> have=20 >> >> >>> the=20 >> >> >>> >> same=20 >> >> >>> >> > problem, also I uninstalled and installed pandoc. >> >> >>> >> > >> >> >>> >> > El jueves, 27 de mayo de 2021 a las 12:00:09 UTC-5, John=20 >> >> MacFarlane=20 >> >> >>> >> > escribi=C3=B3: >> >> >>> >> > >> >> >>> >> >> >> >> >>> >> >> Not much we can do to help without seeing the input markdow= n=20 >> >> file... >> >> >>> >> >> >> >> >>> >> >> Julio Vera writes: >> >> >>> >> >> >> >> >>> >> >> > I usually just ran the following command: >> >> >>> >> >> > >> >> >>> >> >> > pandoc nameofile.md --citeproc -o nameofile.docx >> >> >>> >> >> > >> >> >>> >> >> > But today I was working with a particular .md file and=20 >> after I=20 >> >> >>> >> finished=20 >> >> >>> >> >> > with it I tried to convert it, but the title, date and=20 >> author=20 >> >> >>> >> parameters=20 >> >> >>> >> >> > that go inside the YAML block aren't converted, they=20 >> display=20 >> >> like=20 >> >> >>> >> this: >> >> >>> >> >> > >> >> >>> >> >> > title: title of the document >> >> >>> >> >> > author: myname >> >> >>> >> >> > date: today >> >> >>> >> >> > >> >> >>> >> >> > But just in that format, not like it used to do. And also= =20 >> the=20 >> >> >>> tables=20 >> >> >>> >> >> aren't=20 >> >> >>> >> >> > formatted, they and up in the docs like this: >> >> >>> >> >> > >> >> >>> >> >> > p t >> >> >>> >> >> > r 2 >> >> >>> >> >> > 1 2 >> >> >>> >> >> > 2 2 >> >> >>> >> >> > >> >> >>> >> >> > Just to say an example. I don't know hat happened. >> >> >>> >> >> > >> >> >>> >> >> > --=20 >> >> >>> >> >> > You received this message because you are subscribed to t= he=20 >> >> Google=20 >> >> >>> >> >> Groups "pandoc-discuss" group. >> >> >>> >> >> > To unsubscribe from this group and stop receiving emails= =20 >> from=20 >> >> it,=20 >> >> >>> >> send=20 >> >> >>> >> >> an email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org >> >> >>> >> >> > To view this discussion on the web visit=20 >> >> >>> >> >>=20 >> >> >>> >>=20 >> >> >>>=20 >> >>=20 >> https://groups.google.com/d/msgid/pandoc-discuss/1abeeca5-7362-441d-907a= -08df53958b28n%40googlegroups.com >> >> >>> >> >> . >> >> >>> >> >> >> >> >>> >> > >> >> >>> >> > --=20 >> >> >>> >> > You received this message because you are subscribed to the= =20 >> >> Google=20 >> >> >>> >> Groups "pandoc-discuss" group. >> >> >>> >> > To unsubscribe from this group and stop receiving emails fro= m=20 >> it,=20 >> >> >>> send=20 >> >> >>> >> an email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org >> >> >>> >> > To view this discussion on the web visit=20 >> >> >>> >>=20 >> >> >>>=20 >> >>=20 >> https://groups.google.com/d/msgid/pandoc-discuss/eaeda4d3-c7f4-430f-b569= -e2fee781b831n%40googlegroups.com >> >> >>> >> . >> >> >>> >> > --- >> >> >>> >> > title: Diagn=C3=B3stico situacional sobre la prevalencia de= =20 >> SARS-COV-2=20 >> >> en=20 >> >> >>> >> perros, gatos y hurones de propietarios previamente=20 >> diagn=C3=B3sticados=20 >> >> con=20 >> >> >>> el=20 >> >> >>> >> virus. >> >> >>> >> > author: Julio Vera de Le=C3=B3n >> >> >>> >> > date: 25/Mayo/2021 >> >> >>> >> > bibliography: proyecto.bib >> >> >>> >> > csl: vca.csl >> >> >>> >> > --- >> >> >>> >> > >> >> >>> >> > # T=C3=ADtulo >> >> >>> >> > **H. CONSEJO T=C3=89CNICO DE LA FACULTAD** >> >> >>> >> > **DE MEDICINA VETERINARIA Y ZOOTECNIA** >> >> >>> >> > >> >> >>> >> > **Presente** >> >> >>> >> > >> >> >>> >> > =C3=89l que suscribe, **Julio Vera de Le=C3=B3n**, alumnos d= e la=20 >> Maestr=C3=ADa=20 >> >> en=20 >> >> >>> >> Medicina Veterinaria y Zootecnia en el =C3=A1rea de Salud P=C3= =BAblica y=20 >> >> Medicina=20 >> >> >>> >> Preventiva, con n=C3=BAmero de cuenta 52101425-4. Pone a su=20 >> >> consideraci=C3=B3n el=20 >> >> >>> >> siguiente tema para diagn=C3=B3stico de situaci=C3=B3n: >> >> >>> >> > >> >> >>> >> > **Diagn=C3=B3stico situacional sobre la prevalencia de SARS-= COV-2=20 >> en=20 >> >> >>> perros,=20 >> >> >>> >> gatos y hurones de propietarios previamente diagn=C3=B3sticado= s con=20 >> el=20 >> >> >>> virus.** >> >> >>> >> > >> >> >>> >> > Que ser=C3=A1 realizado en el **Departamento de Medicina Pre= ventiva=20 >> y=20 >> >> >>> Salud=20 >> >> >>> >> P=C3=BAblica de la Facultad de Medicina Veterinaria y Zootecni= a de la=20 >> >> UNAM**=20 >> >> >>> y=20 >> >> >>> >> que pertenece al campo de profundizaci=C3=B3n profesional: **M= edicina=20 >> >> >>> Preventiva=20 >> >> >>> >> y Salud P=C3=BAblica**. Bajo la asesor=C3=ADa del comit=C3=A9 = tutor conformado=20 >> por=20 >> >> el=20 >> >> >>> >> **Dr. MSP Juan Ram=C3=B3n Ayala Torres**, la **MCV. Patricia M= ora=20 >> >> Medina** y=20 >> >> >>> el=20 >> >> >>> >> **MCV. Jorge Francisco Monroy L=C3=B3pez** >> >> >>> >> > >> >> >>> >> > # Introducci=C3=B3n >> >> >>> >> > >> >> >>> >> > El sustento de este diagn=C3=B3stico de situaci=C3=B3n viene= de que a la=20 >> >> fecha=20 >> >> >>> es=20 >> >> >>> >> desconocido por el autor alg=C3=BAn material bibliogr=C3=A1fic= o o de=20 >> consulta=20 >> >> en=20 >> >> >>> el=20 >> >> >>> >> que se tengan datos referentes al n=C3=BAmero de animales que = han=20 >> sido=20 >> >> >>> >> infectados por el s=C3=ADndrome respiratorio agudo severo coro= navirus=20 >> 2=20 >> >> >>> >> (SARS-COV-2). Esto a pesar de que la infecci=C3=B3n en los ani= males=20 >> por=20 >> >> >>> >> SARS-COV-2 cumple los criterios de la OIE como enfermedad=20 >> >> emergente.[^1] >> >> >>> >> > >> >> >>> >> > Es relevante tener datos que nos permitan conocer la=20 >> prevalencia=20 >> >> del=20 >> >> >>> >> agente en los animales de compa=C3=B1=C3=ADa con los que mante= nemos una=20 >> >> relaci=C3=B3n=20 >> >> >>> m=C3=A1s=20 >> >> >>> >> cercana. >> >> >>> >> > >> >> >>> >> > [^1]: Enfermedad emergente por la OIE: La aparici=C3=B3n de = una=20 >> >> >>> enfermedad,=20 >> >> >>> >> infecci=C3=B3n o infestaci=C3=B3n nueva y que impacta en la sa= nidad animal=20 >> o=20 >> >> la=20 >> >> >>> salud=20 >> >> >>> >> humana. >> >> >>> >> > >> >> >>> >> > A la fecha existen al menos 4 distintas instituciones en=20 >> Am=C3=A9rica=20 >> >> que=20 >> >> >>> >> est=C3=A1n realizando estudios de muestreo para conocer la can= tidad=20 >> de=20 >> >> >>> animales=20 >> >> >>> >> de compa=C3=B1ia infectados por contacto con sus propietarios,= las=20 >> >> cuales=20 >> >> >>> son: >> >> >>> >> > >> >> >>> >> > 1. [Ontario Veterinary College, University of Guelph]( >> >> >>> >> https://ovc.uoguelph.ca) >> >> >>> >> > 2. [Cummings School of Veterinary Medicine at Tufts=20 >> University]( >> >> >>> >> https://sites.tufts.edu/covers/) >> >> >>> >> > 3. [Texas A&M University, College of Veterinary Medicine &= =20 >> >> Biomedical=20 >> >> >>> >> Sciences]( >> https://vetmed.tamu.edu/hamer-lab/covid-19-pets-research/ >> >> ) >> >> >>> >> > 4. [University of Washington Center for One Health Research]= ( >> >> >>> >> https://deohs.washington.edu/cohr/covid-19-and-pets-study-caps= ) >> >> >>> >> > >> >> >>> >> > La evidencia apunta a que la epidemia provocada por SARS-COV= -2=20 >> se=20 >> >> >>> >> mantiene principalmente por la transmisi=C3=B3n de humanos hac= ia=20 >> otros=20 >> >> >>> humanos,=20 >> >> >>> >> por lo que en este estudio el enfoque ser=C3=A1 conocer la can= tidad=20 >> de=20 >> >> >>> animales=20 >> >> >>> >> que han sido infectados por sus propietarios, factores que=20 >> >> >>> contribuyeron a=20 >> >> >>> >> la infecci=C3=B3n, y conocer los tipos de casa en los que hubo= m=C3=A1s=20 >> >> riesgo de=20 >> >> >>> >> infecci=C3=B3n a las mascotas. Aunado a lo anterior, la OIE no= =20 >> descarta=20 >> >> a=20 >> >> >>> los=20 >> >> >>> >> animales salvajes y dom=C3=A9sticos como reservorios futuros d= e la=20 >> >> >>> enfermedad y=20 >> >> >>> >> que puedan representar un problema para la salud p=C3=BAblica,= por lo=20 >> >> que=20 >> >> >>> >> sugiere el monitoreo cercano de las especies con las que m=C3= =A1s=20 >> >> >>> convivimos. De=20 >> >> >>> >> igual forma, la introducci=C3=B3n constante del virus a nuevas= =20 >> >> poblaciones=20 >> >> >>> >> animales puede llevar a mutaciones que puedan afectar la sanid= ad=20 >> >> animal=20 >> >> >>> o=20 >> >> >>> >> salud humana. >> >> >>> >> > >> >> >>> >> > A la fecha la OIE cuenta con informaci=C3=B3n referente a la= s=20 >> especies=20 >> >> de=20 >> >> >>> >> inter=C3=A9s en este diagn=C3=B3stico en cu=C3=A1nto a la susc= eptibilidad que=20 >> >> tienen=20 >> >> >>> al=20 >> >> >>> >> virus, se pone en la siguiente tabla:[@OIE2021] >> >> >>> >> > >> >> >>> >> > | Especie | Tipo de infecci=C3=B3n | Susceptibilidad a la in= fecci=C3=B3n=20 >> |=20 >> >> >>> Signos=20 >> >> >>> >> cl=C3=ADnicos | Transmisi=C3=B3n | >> >> >>> >> > | ------------------ | ---------------------- |=20 >> >> >>> >> ------------------------------ | -------------------------- |= =20 >> >> >>> >> ----------------- | >> >> >>> >> > | Hurones | Natural y experimental | Alta | S=C3=AD (s=C3=B3= lo en=20 >> algunos=20 >> >> >>> casos) |=20 >> >> >>> >> S=C3=AD, entre hurones | >> >> >>> >> > | Gatos (dom=C3=A9sticos) | Natural y experimental | Alta | = S=C3=AD=20 >> (s=C3=B3lo=20 >> >> en=20 >> >> >>> >> algunos casos) | S=C3=AD, entre gatos | >> >> >>> >> > | Perros | Natural y experimental | Baja | S=C3=AD (s=C3=B3l= o en algunos=20 >> >> casos)=20 >> >> >>> |=20 >> >> >>> >> No | >> >> >>> >> > Table: SARS-COV-2 en Hurones, perros y gatos (adaptado de la= =20 >> OIE) >> >> >>> >> > >> >> >>> >> > A pesar de que la informaci=C3=B3n actual ha mencionado que = la=20 >> >> epidemia se=20 >> >> >>> >> mantiene por medio de la transmisi=C3=B3n humano-humano, no se= puede=20 >> >> >>> descartar=20 >> >> >>> >> como un componente de esta cadena de transmisi=C3=B3n a los an= imales=20 >> de=20 >> >> >>> >> compa=C3=B1ia, aunque su papel de momento sea mucho menos rele= vante.=20 >> De=20 >> >> ah=C3=AD=20 >> >> >>> que=20 >> >> >>> >> una de las indicaciones que contempla la CDC sea la de mantene= r=20 >> a=20 >> >> los=20 >> >> >>> >> animales separados junto con su propietario y reconoce el ries= go=20 >> de=20 >> >> >>> >> transmisi=C3=B3n desde la mascota es bajo. [@CDC2021] >> >> >>> >> > >> >> >>> >> > # Justificaci=C3=B3n >> >> >>> >> > >> >> >>> >> > La detecci=C3=B3n del material gen=C3=A9tico del virus de SA= RS-COV-2 en=20 >> >> perros=20 >> >> >>> y=20 >> >> >>> >> gatos se ha demostrado en animales con y sin signolog=C3=ADa, = as=C3=AD=20 >> como=20 >> >> >>> tambi=C3=A9n=20 >> >> >>> >> en el suero de mascotas que se han muestreado en zonas=20 >> afectadas,=20 >> >> por=20 >> >> >>> lo=20 >> >> >>> >> que la infecci=C3=B3n en estas especies est=C3=A1 comprobada, = y m=C3=A1s=20 >> >> importante se=20 >> >> >>> ha=20 >> >> >>> >> comprobado que llegan a diseminar material viral con una=20 >> cantidad=20 >> >> >>> necesaria=20 >> >> >>> >> que ha demostrado ser capaz de infectar a otros animales con l= os=20 >> >> que=20 >> >> >>> >> conviven. @Patterson2020 >> >> >>> >> > >> >> >>> >> > En contraste con lo mencionado anteriormente, las especies d= e=20 >> >> >>> producci=C3=B3n=20 >> >> >>> >> como cerdos (*Sus scropha*) y aves (gallinas, patos y pavos) h= an=20 >> >> >>> demostrado=20 >> >> >>> >> de nula a extremadamente baja susceptiblidad de infecci=C3=B3n= de=20 >> manera=20 >> >> >>> >> experimental, adem=C3=A1s de que no se ha comprobado sean capa= ces de=20 >> >> >>> transmitir=20 >> >> >>> >> la enfermedad. @Shi2020 De manera similar los bovinos (*Bos=20 >> >> taurus*)=20 >> >> >>> que se=20 >> >> >>> >> han inoculado experimentalmente con el agente viral han=20 >> demostrado=20 >> >> una=20 >> >> >>> >> susceptibilidad baja al agente y nula capacidad de transmisi= =C3=B3n=20 >> del=20 >> >> >>> mismo.=20 >> >> >>> >> @Ulrich2020=20 >> >> >>> >> > >> >> >>> >> > Debido a que las especies usadas com=C3=BAnmente en la ganad= er=C3=ADa no=20 >> >> han=20 >> >> >>> >> demostrado ser suceptibles al virus, se decide enfocar el=20 >> >> diagn=C3=ADstico=20 >> >> >>> de=20 >> >> >>> >> situaci=C3=B3n en perros, gatos y hurones. De estos tres es de= =20 >> >> particular=20 >> >> >>> >> relevancia mencionar a los hurones dom=C3=A9sticos (*Mustela o= utorius=20 >> >> >>> furo*), ya=20 >> >> >>> >> que pertenecen a la familia *Mustelidae* y guardan una relaci= =C3=B3n=20 >> >> >>> taxon=C3=B3mica=20 >> >> >>> >> con los must=C3=A9lidos usados en granjas como lo es el vis=C3= =B3n=20 >> americano=20 >> >> >>> >> (*Neovison vison*) y vis=C3=B3n europeo (*Mustela lutreola*), = estos=20 >> >> =C3=BAltimos=20 >> >> >>> >> responsables del brote de SARS-COV-2 que llev=C3=B3 a la eutan= asia de=20 >> 17=20 >> >> >>> >> millones de visones.[^2]=20 >> >> >>> >> > >> >> >>> >> > Aunque los hurones dom=C3=A9sticos frecuentemente se encuent= ran=20 >> >> separados=20 >> >> >>> de=20 >> >> >>> >> otros y no son capaces de mantener la propagaci=C3=B3n del vir= us de=20 >> >> manera=20 >> >> >>> >> estable @Gortazar2021, el gobierno del Reino Unido ha emitido= =20 >> una=20 >> >> gu=C3=ADa=20 >> >> >>> >> especial para los due=C3=B1os de estos animales debido al ries= go que=20 >> >> pueden=20 >> >> >>> >> representar [^3].=20 >> >> >>> >> > >> >> >>> >> > [^2]: [=C2=BFPor qu=C3=A9 Dinamarca sacrific=C3=B3 17 millon= es de visones?]( >> >> >>> >>=20 >> >> >>>=20 >> >>=20 >> https://www.nbcnews.com/news/animal-news/here-s-why-denmark-culled-17-mi= llion-minks-now-plans-n1249610 >> >> >>> >> ) >> >> >>> >> > >> >> >>> >> > [^3]: [Medidas preventivas en lo que respecta al SARS-COV-2 = y=20 >> los=20 >> >> >>> >> hurones en el Reino Unido]( >> >> >>> >>=20 >> http://apha.defra.gov.uk/documents/guidance-sars-cov-2-ferrets.pdf) >> >> >>> >> > >> >> >>> >> > Es as=C3=AD que en consideraci=C3=B3n al C=C3=B3digo Sanitar= io para los=20 >> Animales=20 >> >> >>> >> Terrestres que contempla al SARS-COV-2 como una enfermedad=20 >> >> emergente y=20 >> >> >>> la=20 >> >> >>> >> falta de datos al respecto de la enfermedad en los animales=20 >> >> dom=C3=A9sticos,=20 >> >> >>> es=20 >> >> >>> >> necesario realizar un diagn=C3=B3stico de situaci=C3=B3n en nu= estra=20 >> >> poblaci=C3=B3n.=20 >> >> >>> >> > >> >> >>> >> > # Referencias >> >> >>> >> > --- >> >> >>> >> > title: Ejercicio de pruebas diagn=C3=B3sticas complementaria= s >> >> >>> >> > author: Julio Vera de Le=C3=B3n >> >> >>> >> > date: 26/Mayo/2021 >> >> >>> >> > ---- >> >> >>> >> > >> >> >>> >> > # Primer prueba >> >> >>> >> > >> >> >>> >> > La primer prueba tamiz que se usa para brucelosis es la de= =20 >> anillo=20 >> >> en=20 >> >> >>> >> leche.=20 >> >> >>> >> > >> >> >>> >> > Se hizo un diagn=C3=B3stico con la prueba tamiz de anillo en= leche=20 >> >> para=20 >> >> >>> >> detectar a los hatos positivos a la enfermedad, estos hatos=20 >> cuentan=20 >> >> con=20 >> >> >>> >> 10.000 animales, los cuales fueron evaluados individualmente= =20 >> para=20 >> >> >>> encontrar=20 >> >> >>> >> los positivos; a trav=C3=A9s de la prueba tamiz de rosa de ben= gala la=20 >> >> cual=20 >> >> >>> tiene=20 >> >> >>> >> una sensibilidad del 95.2% y una especificidad del 98.5%. >> >> >>> >> > >> >> >>> >> > | Prueba | Positivos | Negativos | Total | >> >> >>> >> > | --------- | --------- | --------- | ----- | >> >> >>> >> > | Positivos | 286 | 145 | 431 | >> >> >>> >> > | Negativos | 14 | 9555 | 9569 | >> >> >>> >> > | Total | 300 | 9700 | 10000 | >> >> >>> >> > >> >> >>> >> > 1. Sanos: 9555 >> >> >>> >> > 2. Enfermos postprueba: 286 >> >> >>> >> > 3. Falsos positivos: 145 >> >> >>> >> > 4. Falsos negativos: 14 >> >> >>> >> > 5. Valor predictivo positivo: 66% >> >> >>> >> > 6. Valor predictivo negativo: 99% >> >> >>> >> > 7. Positivos a la prueba: 431 animales positivos, incluyendo= =20 >> >> falsos=20 >> >> >>> >> positivos.=20 >> >> >>> >> > >> >> >>> >> > Son muchos animales (431) que se van a eliminar incluyendo l= os=20 >> >> 145=20 >> >> >>> >> falsos positivos, sacrificando 145 animales que no deber=C3=AD= an=20 >> >> >>> sacrificarse,=20 >> >> >>> >> por lo que es necesario despu=C3=A9s de la prueba tamiz realiz= ar una=20 >> >> prueba=20 >> >> >>> >> mucho m=C3=A1s especifica, por lo que se sugierte una prueba c= on mas=20 >> >> >>> >> especificidad para bajar la cantidad de falsos positivos.=20 >> >> >>> >> > >> >> >>> >> > # Segunda prueba >> >> >>> >> > >> >> >>> >> > La siguiente prueba se hace en paralelo, la norma dice que l= a=20 >> >> segunda=20 >> >> >>> >> prueba es la *prueba de ribanol*. Esta tiene una sensibilidad= =20 >> del=20 >> >> 96.4%=20 >> >> >>> y=20 >> >> >>> >> especificidad de 98.7% >> >> >>> >> > >> >> >>> >> > Cuadro de 2x2:=20 >> >> >>> >> > >> >> >>> >> > | Prueba | Positivos | Negativos | Total | >> >> >>> >> > | --------- | --------- | --------- | ----- | >> >> >>> >> > | Positivos | 276 | 2 | 278 | >> >> >>> >> > | Negativos | 10 | 143 | 153 | >> >> >>> >> > | Total | 286 | 145 | 431 | >> >> >>> >> > >> >> >>> >> > 1. En que animales se aplicar=C3=ADa? Sobre el total de posi= tivos,=20 >> que=20 >> >> >>> ser=C3=ADa=20 >> >> >>> >> 431 >> >> >>> >> > 2. Verdaderos positivos: 276 >> >> >>> >> > 3. Verdaderamente sanos: 143 >> >> >>> >> > 4. Falsos positivos: 2 >> >> >>> >> > 5. Falsos negativos: 10 >> >> >>> >> > 6. Valor predicitvo positivo: 99%=20 >> >> >>> >> > 7. Valor predictivo negativo: 93% >> >> >>> >> > >> >> >>> >> > # Tercer prueba >> >> >>> >> > >> >> >>> >> > Al realizar un tercer diagn=C3=B3stico con la prueba de fija= ci=C3=B3n=20 >> del=20 >> >> >>> >> complemento (confirmatoria) con una sensibilidad del 97.5% y= =20 >> >> >>> especificidad=20 >> >> >>> >> del 99% >> >> >>> >> > >> >> >>> >> > Cuadro 2 x2: >> >> >>> >> > >> >> >>> >> > | Prueba | Positivos | Negativos | Total | >> >> >>> >> > | --------- | --------- | --------- | ----- | >> >> >>> >> > | Positivos | 269 | 0 | 269 | >> >> >>> >> > | Negativos | 7 | 2 | 9 | >> >> >>> >> > | Total | 276 | 2 | 278 | >> >> >>> >> > >> >> >>> >> > 1. Animales falsos positivos que seran eliminados: 0 >> >> >>> >> > 2. Animales falsos negativos que quedar=C3=A1n en el hato: 7 >> >> >>> >> > 3. Valor predictivo positivo: 100%. Quiere decir que de los= =20 >> >> animales=20 >> >> >>> a=20 >> >> >>> >> los que se les hace la prueba y est=C3=A1n enfermos, el 100% s= aldr=C3=A1n=20 >> con=20 >> >> un=20 >> >> >>> >> respultado positivo. >> >> >>> >> > 4. Valor predictivo negativo: 22%. Quiere decir de los=20 >> animales a=20 >> >> los=20 >> >> >>> >> que se les hace la prueba y est=C3=A1n sanos, solamente el 22%= tiene=20 >> >> >>> >> probabilidad de estar realmente sano si sali=C3=B3 negativo.= =20 >> >> >>> >> >=20 >> >> >>> >> > # Despu=C3=A9s de las pruebas >> >> >>> >> > >> >> >>> >> > Al realizar un diagn=C3=B3stico a los 6 meses de iniciado el= =20 >> programa: >> >> >>> >> > >> >> >>> >> > 1. =C2=BFCu=C3=A1l es la prevalencia real final de la enferm= edad en la=20 >> >> cuenca=20 >> >> >>> >> lechera? 2.8% (278/10000) >> >> >>> >> > 2. La prevalencia real en el 3er cuadro: 99.3%=20 >> >> >>> >> > 3. =C2=BFCu=C3=A1l es la prevalencia aparente en el 3er cuad= ro? 2.7% () >> >> >>> >> > 4. Repercusiones de dejar a los animales falsos negativos en= =20 >> el=20 >> >> hato=20 >> >> >>> es=20 >> >> >>> >> que se quedan 7 animales con brucella, que pueden seguir=20 >> >> contagiando y=20 >> >> >>> >> prevalece la enfermedad.=20 >> >> >>> >> > >> >> >>> >> > El costo de la prueba da anillo en leche es absorbido por el= =20 >> >> gobierno=20 >> >> >>> >> como una ayuda a los productoras y un incentivo para erradicar= =20 >> esta=20 >> >> >>> >> zoonosis de tos animales. Sin embargo, el costo de las dem=C3= =A1s=20 >> >> pruebas es=20 >> >> >>> >> erogado por los productores: >> >> >>> >> > >> >> >>> >> > 1. Costo de diagnosticar a los 10,000 animales con rosa de= =20 >> >> bengala=20 >> >> >>> >> (anillo en leche), si esta prueba cuesta $0.15 por 100 animale= s:=20 >> 15=20 >> >> >>> pesos >> >> >>> >> > 2. Costo de diagnosticar $1 por 100: ser=C3=ADan $4.3 >> >> >>> >> > 3. Costo de diagnosticar fijaci=C3=B3n por complemento $500 = por 100=20 >> >> >>> animales:=20 >> >> >>> >> $1390 >> >> >>> >> > 4. Costo de eliminar a los animales positivos y falsos=20 >> positivos=20 >> >> >>> >> (separadamente), si una vaquilla de reemplazo cuesta $1,000=20 >> >> dolares.=20 >> >> >>> Costo=20 >> >> >>> >> de positivos: $278,000 dolares.=20 >> >> >>> >> > 5. Costo total de las 3 pruebas y de los animales a=20 >> sacrificar:=20 >> >> De=20 >> >> >>> las 3=20 >> >> >>> >> pruebas son $1409.3 pesos.=20 >> >> >>> >> >> >> >>> > >> >> >>> > --=20 >> >> >>> > You received this message because you are subscribed to the=20 >> Google=20 >> >> >>> Groups "pandoc-discuss" group. >> >> >>> > To unsubscribe from this group and stop receiving emails from i= t,=20 >> >> send=20 >> >> >>> an email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org >> >> >>> > To view this discussion on the web visit=20 >> >> >>>=20 >> >>=20 >> https://groups.google.com/d/msgid/pandoc-discuss/edd6a94c-a735-494d-88c5= -bacabb6842b0n%40googlegroups.com >> >> >>> . >> >> >>> >> >> >> >> >> >> --=20 >> >> >> You received this message because you are subscribed to the Google= =20 >> >> Groups "pandoc-discuss" group. >> >> >> To unsubscribe from this group and stop receiving emails from it,= =20 >> send=20 >> >> an email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org >> >> >> To view this discussion on the web visit=20 >> >>=20 >> https://groups.google.com/d/msgid/pandoc-discuss/932560f4-7866-4fd4-90e7= -4797e23fab20n%40googlegroups.com >> >> . >> >> >> >> >> >> Table tests to see if it works >> >> >> >> >> >> | Perros | Talla | Peso | Nombre | >> >> >> | ------ | ----- | ---- | ------ | >> >> >> | 23 | 5 | 6 | Chicu | >> >> >> | 24 | 2 | 4 | Fala | >> >> >> | 45 | 8 | 10 | Frty | >> >> >> Table: Perros 1 >> >> >> >> >> >> Another table >> >> >> >> >> >> | Perros | Talla | Peso | Nombre | >> >> >> | ------ | ----- | ---- | ------ | >> >> >> | 23 | 5 | 6 | Chicu | >> >> >> | 24 | 2 | 4 | Fala | >> >> >> | 45 | 8 | 10 | Frty | >> >> >> Table: Perros 2 >> >> >> >> >> >> And another table >> >> >> >> >> >> | Perros | Talla | Peso | Nombre | >> >> >> | ------ | ----- | ---- | ------ | >> >> >> | 23 | 5 | 6 | Chicu | >> >> >> | 24 | 2 | 4 | Fala | >> >> >> | 45 | 8 | 10 | Frty | >> >> >> Table: Perros 3 >> >> >> > >> > --=20 >> > You received this message because you are subscribed to the Google=20 >> Groups "pandoc-discuss" group. >> > To unsubscribe from this group and stop receiving emails from it, send= =20 >> an email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org >> > To view this discussion on the web visit=20 >> https://groups.google.com/d/msgid/pandoc-discuss/ba007430-af22-455f-a4a8= -96011afe5dc3n%40googlegroups.com >> . >> > > --=20 > You received this message because you are subscribed to the Google Groups= "pandoc-discuss" group. > To unsubscribe from this group and stop receiving emails from it, send an= email to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org > To view this discussion on the web visit https://groups.google.com/d/msgi= d/pandoc-discuss/74450a6b-43ad-4780-90d6-80f51c203f1fn%40googlegroups.com. --=20 You received this message because you are subscribed to the Google Groups "= pandoc-discuss" group. To unsubscribe from this group and stop receiving emails from it, send an e= mail to pandoc-discuss+unsubscribe-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org To view this discussion on the web visit https://groups.google.com/d/msgid/= pandoc-discuss/m24kemrfgu.fsf%40MacBook-Pro.hsd1.ca.comcast.net.