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* [PR PATCH] Math package: lcalc-1.23
@ 2021-04-06  5:10 tornaria
  2021-04-06  5:21 ` [PR PATCH] [Updated] " tornaria
                   ` (33 more replies)
  0 siblings, 34 replies; 35+ messages in thread
From: tornaria @ 2021-04-06  5:10 UTC (permalink / raw)
  To: ml

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There is a new pull request by tornaria against master on the void-packages repository

https://github.com/tornaria/void-packages math-lcalc
https://github.com/void-linux/void-packages/pull/30036

Math package: lcalc-1.23
Michael Rubinstein's L-function calculator.

The long files are just tests. The 3 versions are almost the same except for a few minor rounding differences.

A patch file from https://github.com/void-linux/void-packages/pull/30036.patch is attached

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-math-lcalc-30036.patch --]
[-- Type: text/x-diff, Size: 129498 bytes --]

From d9bfe3b144ec297cd352cca552b95773569bd1f3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Thu, 1 Feb 2018 16:32:51 -0300
Subject: [PATCH] New package: lcalc-1.23

---
 srcpkgs/lcalc-devel                           |    1 +
 srcpkgs/lcalc/files/test                      |   14 +
 srcpkgs/lcalc/files/test.i686                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.musl                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.out                  | 2102 +++++++++++++++++
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 +
 .../lcalc-1.23_default_parameters_1.patch     |   24 +
 .../lcalc-1.23_default_parameters_2.patch     |   56 +
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 +
 .../lcalc-1.23_fix-return-non-void.patch      |   20 +
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 +
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 +
 srcpkgs/lcalc/patches/pari_include.patch      |   30 +
 .../lcalc/patches/using_namespace_std.patch   |   41 +
 srcpkgs/lcalc/template                        |   44 +
 15 files changed, 6691 insertions(+)
 create mode 120000 srcpkgs/lcalc-devel
 create mode 100644 srcpkgs/lcalc/files/test
 create mode 100644 srcpkgs/lcalc/files/test.i686
 create mode 100644 srcpkgs/lcalc/files/test.musl
 create mode 100644 srcpkgs/lcalc/files/test.out
 create mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 create mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 create mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch
 create mode 100644 srcpkgs/lcalc/template

diff --git a/srcpkgs/lcalc-devel b/srcpkgs/lcalc-devel
new file mode 120000
index 000000000000..ec3437a2fb19
--- /dev/null
+++ b/srcpkgs/lcalc-devel
@@ -0,0 +1 @@
+lcalc
\ No newline at end of file
diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
new file mode 100644
index 000000000000..cbac6d8b324d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test
@@ -0,0 +1,14 @@
+echo "### First 1000 zeros of zeta function"
+./lcalc -z 1000
+echo
+echo "### Analytic rank of elliptic curve 5077a1"
+./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
+echo
+echo "### run example program"
+LD_LIBRARY_PATH=. example_programs/example
+echo
+echo "### test data files: zeros of data_mass"
+./lcalc -F example_data_files/data_maass -z 20
+echo
+echo "### test data files: zeros of data_tau"
+./lcalc -F example_data_files/data_tau -z 1000
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
new file mode 100644
index 000000000000..08872e4cc25f
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.i686
@@ -0,0 +1,2102 @@
+### First 1000 zeros of zeta function
+ 14.13472514173
+ 21.02203963877
+ 25.01085758015
+ 30.42487612586
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
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+0
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+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.musl b/srcpkgs/lcalc/files/test.musl
new file mode 100644
index 000000000000..5b1b4d8b978d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.musl
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
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+### test data files: zeros of data_mass
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+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.out b/srcpkgs/lcalc/files/test.out
new file mode 100644
index 000000000000..edae9c7f9381
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.out
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
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+0
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+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch
new file mode 100644
index 000000000000..c6b5c0aaa39e
--- /dev/null
+++ b/srcpkgs/lcalc/patches/Lcommon.h.patch
@@ -0,0 +1,11 @@
+--- src/include/Lcommon.h	2010-01-31 15:16:45.000000000 +0000
++++ src/include/Lcommon.h	2011-03-08 21:19:11.849443238 +0000
+@@ -25,7 +25,7 @@
+ #ifdef USE_MPFR
+ inline double lcalc_to_double(const double& x) { return x; }
+ #endif
+-//inline double lcalc_to_double(const long double& x) { return x; }
++inline double lcalc_to_double(const long double& x) { return x; }
+ inline double lcalc_to_double(const int& x) { return x; }
+ inline double lcalc_to_double(const long long& x) { return x; }
+ inline double lcalc_to_double(const short& x) { return x; }
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
new file mode 100644
index 000000000000..b94fc72d18a5
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
@@ -0,0 +1,24 @@
+diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
+--- lcalc-1.23-vanilla/include/Ldirichlet_series.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h	2014-04-21 14:37:59.027464849 +0200
+@@ -43,7 +43,7 @@
+  //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
+ template <class ttype>
+ Complex L_function <ttype>::
+-dirichlet_series(Complex s, long long N=-1)
++dirichlet_series(Complex s, long long N)
+ {
+     Complex z=0.;
+     long long m,n;
+diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
+--- lcalc-1.23-vanilla/include/L.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/L.h	2014-04-21 14:32:04.003467348 +0200
+@@ -491,7 +491,7 @@
+ 
+     //#include "Ldirichlet_series.h" //for computing Dirichlet series
+     Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
+-    Complex dirichlet_series(Complex s, long long N);
++    Complex dirichlet_series(Complex s, long long N=-1LL);
+ 
+     //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
+     //void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
new file mode 100644
index 000000000000..f5fd45358d0b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
@@ -0,0 +1,56 @@
+--- lcalc-1.23/include/Lgamma.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23/include/Lgamma.h	2014-05-18 21:15:27.786889718 +0200
+@@ -77,7 +77,7 @@
+ //n=0 should just give log_GAMMA(z)... thus making log_GAMMA
+ //code obsolete. But leave log_GAMMA intact anyways.
+ template <class ttype>
+-precise(ttype) log_GAMMA (ttype z,int n=0)
++precise(ttype) log_GAMMA (ttype z,int n)
+ {
+     int M;
+     precise(ttype) log_G,r,r2,y;
+@@ -230,7 +230,7 @@
+ //value exp_w which holds exp(-w)
+ //computes G(z,w), so there's an extra w^(-z) factor.
+ template <class ttype>
+-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
+ {
+ 
+     Complex G;
+@@ -334,7 +334,7 @@
+ 
+ 
+ template <class ttype>
+-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false)  //computes G(z,w) via continued fraction
++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via continued fraction
+ {
+ 
+         ttype G;
+@@ -424,7 +424,7 @@
+ }
+ 
+ template <class ttype>
+-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false)  //computes G(z,w) via asymptotic series
++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via asymptotic series
+ {
+ 
+         if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
+@@ -446,7 +446,7 @@
+ 
+ 
+ template <class ttype>
+-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false)  //computes g(z,w)
++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle)  //computes g(z,w)
+ {
+ 
+     ttype g;
+@@ -604,7 +604,7 @@
+ }
+ 
+ template <class ttype>
+-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
+ {
+     Complex SUM=0;
+ 
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
new file mode 100644
index 000000000000..1640dda12bc4
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
@@ -0,0 +1,53 @@
+diff --git a/include/cmdline.h b/include/cmdline.h
+index 319920a..41967e1 100644
+--- a/include/cmdline.h
++++ b/include/cmdline.h
+@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info);
+ int cmdline_parser_required (struct gengetopt_args_info *args_info,
+   const char *prog_name);
+ 
+-extern char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
++extern const char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
+ 
+ 
+ #ifdef __cplusplus
+diff --git a/src/cmdline.c b/src/cmdline.c
+index 6daf7da..1087693 100644
+--- a/src/cmdline.c
++++ b/src/cmdline.c
+@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf
+                         struct cmdline_parser_params *params, const char *additional_error);
+ 
+ 
+-char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
++const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
+ 
+ static char *
+ gengetopt_strdup (const char *s);
+@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info)
+  * -2 if more than one value has matched
+  */
+ static int
+-check_possible_values(const char *val, char *values[])
++check_possible_values(const char *val, const char *values[])
+ {
+   int i, found, last;
+   size_t len;
+@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[])
+ 
+ 
+ static void
+-write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[])
++write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
+ {
+   int found = -1;
+   if (arg) {
+@@ -681,7 +681,7 @@ static char *package_name = 0;
+ static
+ int update_arg(void *field, char **orig_field,
+                unsigned int *field_given, unsigned int *prev_given, 
+-               char *value, char *possible_values[], const char *default_value,
++               char *value, const char *possible_values[], const char *default_value,
+                cmdline_parser_arg_type arg_type,
+                int check_ambiguity, int override,
+                int no_free, int multiple_option,
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
new file mode 100644
index 000000000000..23850bbfbd56
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
@@ -0,0 +1,20 @@
+diff --git a/include/Lvalue.h b/include/Lvalue.h
+index eef9ffa..01974c3 100644
+--- a/include/Lvalue.h
++++ b/include/Lvalue.h
+@@ -486,6 +486,15 @@
+             delete [] DELTA;
+             return L_value*exp(z-.5*log(OMEGA));
+         }
++
++        else // return L(s)
++        {
++            z=1;
++            for(j=1;j<=a;j++)
++                z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]);
++            delete [] DELTA;
++            return L_value*exp(-log(Q)*s)/z;
++        }
+     }
+ 
+ 
diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch
new file mode 100644
index 000000000000..d565490d98d3
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-2.7.patch
@@ -0,0 +1,67 @@
+--- src/src/Lcommandline_elliptic.cc	2010-01-31 16:16:45.000000000 +0100
++++ src/src/Lcommandline_elliptic.cc	2011-05-10 17:08:10.000000000 +0200
+@@ -121,11 +121,11 @@
+ 
+ 
+     F = cgetg(6, t_VEC);
+-    F[1] = lgeti(BIGDEFAULTPREC);
+-    F[2] = lgeti(BIGDEFAULTPREC);
+-    F[3] = lgeti(BIGDEFAULTPREC);
+-    F[4] = lgeti(BIGDEFAULTPREC);
+-    F[5] = lgeti(BIGDEFAULTPREC);
++    F[1] = (long)cgeti(BIGDEFAULTPREC);
++    F[2] = (long)cgeti(BIGDEFAULTPREC);
++    F[3] = (long)cgeti(BIGDEFAULTPREC);
++    F[4] = (long)cgeti(BIGDEFAULTPREC);
++    F[5] = (long)cgeti(BIGDEFAULTPREC);
+ 
+     //gaffsg(a1,(GEN) F[1]);
+     //gaffsg(a2,(GEN) F[2]);
+@@ -133,15 +133,15 @@
+     //gaffsg(a4,(GEN) F[4]);
+     //gaffsg(a6,(GEN) F[5]);
+ 
+-    gaffect(strtoGEN(a1), (GEN) F[1]);
+-    gaffect(strtoGEN(a2), (GEN) F[2]);
+-    gaffect(strtoGEN(a3), (GEN) F[3]);
+-    gaffect(strtoGEN(a4), (GEN) F[4]);
+-    gaffect(strtoGEN(a6), (GEN) F[5]);
++    gaffect(gp_read_str(a1), (GEN) F[1]);
++    gaffect(gp_read_str(a2), (GEN) F[2]);
++    gaffect(gp_read_str(a3), (GEN) F[3]);
++    gaffect(gp_read_str(a4), (GEN) F[4]);
++    gaffect(gp_read_str(a6), (GEN) F[5]);
+ 
+-    E = initell(F,BIGDEFAULTPREC);
++    E = ellinit(F, NULL, BIGDEFAULTPREC);
+ 
+-    C=globalreduction(E);
++    C=ellglobalred(E);
+ 
+     x=gtodouble((GEN) C[1]);
+ 
+@@ -167,8 +167,8 @@
+ 
+             p=n;
+             gaffsg(p,y);
+-            coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p));
+-            //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p));
++            coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p));
++            //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p));
+ 
+             if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction
+             {
+diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc
+--- src/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ b/src/Lcommandline.cc	2014-01-06 14:02:19.463388366 +0100
+@@ -473,7 +473,9 @@
+ 
+ #ifdef INCLUDE_PARI
+         if(do_elliptic_curve){
+-             allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++             // Reallocate PARI stack
++             paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++
+              if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl;
+              initialize_new_L(a1,a2,a3,a4,a6,N_terms); 
+         }
diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch
new file mode 100644
index 000000000000..1566681a909b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-mem.patch
@@ -0,0 +1,24 @@
+Use a much smaller PARI stack size for starting up
+
+Actually 1MB is sufficient, so there is plenty of margin
+with the 16MB in this patch
+
+See https://trac.sagemath.org/ticket/24516
+
+diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc
+--- lcalc-1.23/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ lcalc-1.23-patched//src/Lcommandline.cc	2018-01-30 11:23:06.975418539 +0100
+@@ -412,12 +412,7 @@
+ 
+             t2=.5; //t2=.5 because of the GAMMA(s+1/2)
+ 
+-            pari_init(1000000000,2);
+-            //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent
+-            //pari from giving its interrupt signal when its elliptic curve a_p
+-            //algorithm is called and interrupted with ctrl-c. Requires a more current
+-            //version of pari, so use pari_init above until I have a configure set up
+-            //that detects which pari, if any, is installed.
++            pari_init_opts(16000000, 2, INIT_DFTm);
+ 
+             coeff = new Double[3];
+             //compute the conductor which is copied to coeff[1]
diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch
new file mode 100644
index 000000000000..8ad1cc1cc43a
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari_include.patch
@@ -0,0 +1,30 @@
+Notes:
+Use a standard include path for pari. It means there is no need
+to specify an include path when pari headers are in a standard location.
+
+diff --git a/include/Lcommandline.h b/include/Lcommandline.h
+index 6537e98..5e63e4e 100644
+--- a/include/Lcommandline.h
++++ b/include/Lcommandline.h
+@@ -39,7 +39,7 @@
+ 
+ #include "Lcommandline_globals.h"      //command line global variables
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
+diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h
+index 17fa42c..7d80208 100644
+--- a/include/Lcommandline_elliptic.h
++++ b/include/Lcommandline_elliptic.h
+@@ -32,7 +32,7 @@
+ 
+ 
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions 
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch
new file mode 100644
index 000000000000..6d733ffd7115
--- /dev/null
+++ b/srcpkgs/lcalc/patches/using_namespace_std.patch
@@ -0,0 +1,41 @@
+diff --git a/include/Lcommon.h b/include/Lcommon.h
+index 1b3be43..bf40532 100644
+--- a/include/Lcommon.h
++++ b/include/Lcommon.h
+@@ -48,7 +48,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
+index 86ae4df..33c560c 100644
+--- a/include/Lcommon_ld.h
++++ b/include/Lcommon_ld.h
+@@ -53,7 +53,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lglobals.h b/include/Lglobals.h
+index 60002e4..ca2606c 100644
+--- a/include/Lglobals.h
++++ b/include/Lglobals.h
+@@ -24,9 +24,9 @@
+ #ifndef Lglobals_H
+ #define Lglobals_H
+ 
++#include <valarray>
+ using namespace std;
+ 
+-#include <valarray>
+ #ifdef USE_MPFR
+     #include "Lgmpfrxx.h"
+     typedef mpfr_class Double;
diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
new file mode 100644
index 000000000000..130fa124bea5
--- /dev/null
+++ b/srcpkgs/lcalc/template
@@ -0,0 +1,44 @@
+# Template file for 'lcalc'
+pkgname=lcalc
+version=1.23
+revision=1
+build_wrksrc="src"
+build_style="gnu-makefile"
+makedepends="pari-devel"
+short_desc="Michael Rubinstein's L-function calculator"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
+license="GPL-2.0-or-later"
+homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/"
+distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2"
+checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0
+patch_args="-Np1"
+
+pre_build() {
+	CC="$CXX"
+	LDFLAGS+=" -lpari"
+	make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI"
+}
+
+pre_install() {
+	mkdir -p ${DESTDIR}/usr/{bin,lib,include}
+	make_install_args+=" INSTALL_DIR=${DESTDIR}/usr"
+}
+
+do_check() {
+	echo "Testing lcalc ..."
+	. "${FILESDIR}/test" > test.log
+	case "$XBPS_TARGET_MACHINE" in
+		i686) 	OUT="${FILESDIR}/test.i686" ;;
+		*-musl) OUT="${FILESDIR}/test.musl" ;;
+		*) 	OUT="${FILESDIR}/test.out" ;;
+	esac
+	diff "$OUT" test.log && echo PASS
+}
+
+lcalc-devel_package() {
+	short_desc+=" - development files"
+	pkg_install() {
+		vmove "usr/lib"
+		vmove "usr/include"
+	}
+}

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR PATCH] [Updated] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
@ 2021-04-06  5:21 ` tornaria
  2021-04-07 12:56 ` dkwo
                   ` (32 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-06  5:21 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 476 bytes --]

There is an updated pull request by tornaria against master on the void-packages repository

https://github.com/tornaria/void-packages math-lcalc
https://github.com/void-linux/void-packages/pull/30036

Math package: lcalc-1.23
Michael Rubinstein's L-function calculator.

The long files are just tests. The 3 versions are almost the same except for a few minor rounding differences.

A patch file from https://github.com/void-linux/void-packages/pull/30036.patch is attached

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-math-lcalc-30036.patch --]
[-- Type: text/x-diff, Size: 129511 bytes --]

From 690db2a6b605aaf4d7419cfb326ec9c86841b3c3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Thu, 1 Feb 2018 16:32:51 -0300
Subject: [PATCH] New package: lcalc-1.23

---
 srcpkgs/lcalc-devel                           |    1 +
 srcpkgs/lcalc/files/test                      |   14 +
 srcpkgs/lcalc/files/test.i686                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.musl                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.out                  | 2102 +++++++++++++++++
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 +
 .../lcalc-1.23_default_parameters_1.patch     |   24 +
 .../lcalc-1.23_default_parameters_2.patch     |   56 +
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 +
 .../lcalc-1.23_fix-return-non-void.patch      |   20 +
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 +
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 +
 srcpkgs/lcalc/patches/pari_include.patch      |   30 +
 .../lcalc/patches/using_namespace_std.patch   |   41 +
 srcpkgs/lcalc/template                        |   45 +
 15 files changed, 6692 insertions(+)
 create mode 120000 srcpkgs/lcalc-devel
 create mode 100644 srcpkgs/lcalc/files/test
 create mode 100644 srcpkgs/lcalc/files/test.i686
 create mode 100644 srcpkgs/lcalc/files/test.musl
 create mode 100644 srcpkgs/lcalc/files/test.out
 create mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 create mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 create mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch
 create mode 100644 srcpkgs/lcalc/template

diff --git a/srcpkgs/lcalc-devel b/srcpkgs/lcalc-devel
new file mode 120000
index 000000000000..ec3437a2fb19
--- /dev/null
+++ b/srcpkgs/lcalc-devel
@@ -0,0 +1 @@
+lcalc
\ No newline at end of file
diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
new file mode 100644
index 000000000000..cbac6d8b324d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test
@@ -0,0 +1,14 @@
+echo "### First 1000 zeros of zeta function"
+./lcalc -z 1000
+echo
+echo "### Analytic rank of elliptic curve 5077a1"
+./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
+echo
+echo "### run example program"
+LD_LIBRARY_PATH=. example_programs/example
+echo
+echo "### test data files: zeros of data_mass"
+./lcalc -F example_data_files/data_maass -z 20
+echo
+echo "### test data files: zeros of data_tau"
+./lcalc -F example_data_files/data_tau -z 1000
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
new file mode 100644
index 000000000000..08872e4cc25f
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.i686
@@ -0,0 +1,2102 @@
+### First 1000 zeros of zeta function
+ 14.13472514173
+ 21.02203963877
+ 25.01085758015
+ 30.42487612586
+ 32.93506158774
+ 37.58617815883
+ 40.91871901215
+ 43.32707328091
+ 48.00515088117
+ 49.77383247767
+ 52.97032147771
+ 56.44624769706
+ 59.3470440026
+ 60.83177852461
+ 65.11254404808
+ 67.07981052949
+ 69.54640171117
+ 72.06715767448
+ 75.70469069908
+ 77.14484006887
+ 79.33737502025
+ 82.91038085409
+ 84.73549298052
+ 87.42527461313
+ 88.80911120763
+ 92.49189927056
+ 94.65134404052
+ 95.87063422825
+ 98.831194218194
+ 101.31785100573
+ 103.72553804048
+ 105.44662305233
+ 107.16861118428
+ 111.02953554317
+ 111.87465917699
+ 114.32022091545
+ 116.22668032086
+ 118.79078286598
+ 121.37012500242
+ 122.94682929355
+ 124.25681855435
+ 127.5166838796
+ 129.57870419996
+ 131.08768853093
+ 133.497737203
+ 134.75650975337
+ 138.11604205453
+ 139.73620895212
+ 141.12370740402
+ 143.11184580762
+ 146.00098248677
+ 147.42276534256
+ 150.05352042078
+ 150.92525761224
+ 153.0246938112
+ 156.11290929424
+ 157.59759181759
+ 158.84998817142
+ 161.1889641376
+ 163.03070968718
+ 165.5370691879
+ 167.1844399782
+ 169.0945154156
+ 169.9119764794
+ 173.4115365196
+ 174.7541915234
+ 176.4414342977
+ 178.3774077761
+ 179.9164840203
+ 182.2070784844
+ 184.8744678484
+ 185.5987836777
+ 187.2289225835
+ 189.416158656
+ 192.0266563607
+ 193.0797266038
+ 195.2653966795
+ 196.876481841
+ 198.0153096763
+ 201.2647519437
+ 202.4935945141
+ 204.1896718031
+ 205.3946972022
+ 207.9062588878
+ 209.5765097169
+ 211.6908625954
+ 213.3479193597
+ 214.5470447835
+ 216.1695385083
+ 219.067596349
+ 220.7149188393
+ 221.4307055547
+ 224.0070002546
+ 224.9833246696
+ 227.4214442797
+ 229.3374133055
+ 231.2501887005
+ 231.9872352532
+ 233.6934041789
+ 236.5242296658
+ 237.7698204809
+ 239.5554775733
+ 241.0491577962
+ 242.8232719342
+ 244.0708984971
+ 247.1369900749
+ 248.1019900601
+ 249.5736896447
+ 251.014947795
+ 253.069986748
+ 255.3062564549
+ 256.3807136944
+ 258.6104394915
+ 259.8744069897
+ 260.8050845046
+ 263.5738939049
+ 265.5578518389
+ 266.6149737815
+ 267.9219150828
+ 269.970449024
+ 271.4940556416
+ 273.4596091884
+ 275.5874926493
+ 276.4520495031
+ 278.2507435298
+ 279.2292509277
+ 282.4651147651
+ 283.2111857332
+ 284.8359639809
+ 286.667445363
+ 287.9119205014
+ 289.5798549292
+ 291.8462913291
+ 293.5584341394
+ 294.9653696193
+ 295.573254879
+ 297.9792770619
+ 299.8403260537
+ 301.6493254622
+ 302.6967495896
+ 304.8643713409
+ 305.728912602
+ 307.2194961282
+ 310.1094631467
+ 311.1651415304
+ 312.4278011806
+ 313.9852857312
+ 315.4756160895
+ 317.7348059424
+ 318.8531042563
+ 321.1601343091
+ 322.1445586725
+ 323.4669695575
+ 324.8628660517
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
+1.5
+0.1666666666667
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+0.5714285714286
+0
+0.5714285714286
+0.5714285714286
+0
+0.8888888888889
+6.123031769112e-17
+-0.7071067811865
+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.musl b/srcpkgs/lcalc/files/test.musl
new file mode 100644
index 000000000000..5b1b4d8b978d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.musl
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
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+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.out b/srcpkgs/lcalc/files/test.out
new file mode 100644
index 000000000000..edae9c7f9381
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.out
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
+1.5
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+0
+0.8888888888889
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+-0.7071067811865
+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch
new file mode 100644
index 000000000000..c6b5c0aaa39e
--- /dev/null
+++ b/srcpkgs/lcalc/patches/Lcommon.h.patch
@@ -0,0 +1,11 @@
+--- src/include/Lcommon.h	2010-01-31 15:16:45.000000000 +0000
++++ src/include/Lcommon.h	2011-03-08 21:19:11.849443238 +0000
+@@ -25,7 +25,7 @@
+ #ifdef USE_MPFR
+ inline double lcalc_to_double(const double& x) { return x; }
+ #endif
+-//inline double lcalc_to_double(const long double& x) { return x; }
++inline double lcalc_to_double(const long double& x) { return x; }
+ inline double lcalc_to_double(const int& x) { return x; }
+ inline double lcalc_to_double(const long long& x) { return x; }
+ inline double lcalc_to_double(const short& x) { return x; }
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
new file mode 100644
index 000000000000..b94fc72d18a5
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
@@ -0,0 +1,24 @@
+diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
+--- lcalc-1.23-vanilla/include/Ldirichlet_series.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h	2014-04-21 14:37:59.027464849 +0200
+@@ -43,7 +43,7 @@
+  //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
+ template <class ttype>
+ Complex L_function <ttype>::
+-dirichlet_series(Complex s, long long N=-1)
++dirichlet_series(Complex s, long long N)
+ {
+     Complex z=0.;
+     long long m,n;
+diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
+--- lcalc-1.23-vanilla/include/L.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/L.h	2014-04-21 14:32:04.003467348 +0200
+@@ -491,7 +491,7 @@
+ 
+     //#include "Ldirichlet_series.h" //for computing Dirichlet series
+     Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
+-    Complex dirichlet_series(Complex s, long long N);
++    Complex dirichlet_series(Complex s, long long N=-1LL);
+ 
+     //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
+     //void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
new file mode 100644
index 000000000000..f5fd45358d0b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
@@ -0,0 +1,56 @@
+--- lcalc-1.23/include/Lgamma.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23/include/Lgamma.h	2014-05-18 21:15:27.786889718 +0200
+@@ -77,7 +77,7 @@
+ //n=0 should just give log_GAMMA(z)... thus making log_GAMMA
+ //code obsolete. But leave log_GAMMA intact anyways.
+ template <class ttype>
+-precise(ttype) log_GAMMA (ttype z,int n=0)
++precise(ttype) log_GAMMA (ttype z,int n)
+ {
+     int M;
+     precise(ttype) log_G,r,r2,y;
+@@ -230,7 +230,7 @@
+ //value exp_w which holds exp(-w)
+ //computes G(z,w), so there's an extra w^(-z) factor.
+ template <class ttype>
+-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
+ {
+ 
+     Complex G;
+@@ -334,7 +334,7 @@
+ 
+ 
+ template <class ttype>
+-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false)  //computes G(z,w) via continued fraction
++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via continued fraction
+ {
+ 
+         ttype G;
+@@ -424,7 +424,7 @@
+ }
+ 
+ template <class ttype>
+-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false)  //computes G(z,w) via asymptotic series
++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via asymptotic series
+ {
+ 
+         if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
+@@ -446,7 +446,7 @@
+ 
+ 
+ template <class ttype>
+-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false)  //computes g(z,w)
++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle)  //computes g(z,w)
+ {
+ 
+     ttype g;
+@@ -604,7 +604,7 @@
+ }
+ 
+ template <class ttype>
+-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
+ {
+     Complex SUM=0;
+ 
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
new file mode 100644
index 000000000000..1640dda12bc4
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
@@ -0,0 +1,53 @@
+diff --git a/include/cmdline.h b/include/cmdline.h
+index 319920a..41967e1 100644
+--- a/include/cmdline.h
++++ b/include/cmdline.h
+@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info);
+ int cmdline_parser_required (struct gengetopt_args_info *args_info,
+   const char *prog_name);
+ 
+-extern char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
++extern const char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
+ 
+ 
+ #ifdef __cplusplus
+diff --git a/src/cmdline.c b/src/cmdline.c
+index 6daf7da..1087693 100644
+--- a/src/cmdline.c
++++ b/src/cmdline.c
+@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf
+                         struct cmdline_parser_params *params, const char *additional_error);
+ 
+ 
+-char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
++const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
+ 
+ static char *
+ gengetopt_strdup (const char *s);
+@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info)
+  * -2 if more than one value has matched
+  */
+ static int
+-check_possible_values(const char *val, char *values[])
++check_possible_values(const char *val, const char *values[])
+ {
+   int i, found, last;
+   size_t len;
+@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[])
+ 
+ 
+ static void
+-write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[])
++write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
+ {
+   int found = -1;
+   if (arg) {
+@@ -681,7 +681,7 @@ static char *package_name = 0;
+ static
+ int update_arg(void *field, char **orig_field,
+                unsigned int *field_given, unsigned int *prev_given, 
+-               char *value, char *possible_values[], const char *default_value,
++               char *value, const char *possible_values[], const char *default_value,
+                cmdline_parser_arg_type arg_type,
+                int check_ambiguity, int override,
+                int no_free, int multiple_option,
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
new file mode 100644
index 000000000000..23850bbfbd56
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
@@ -0,0 +1,20 @@
+diff --git a/include/Lvalue.h b/include/Lvalue.h
+index eef9ffa..01974c3 100644
+--- a/include/Lvalue.h
++++ b/include/Lvalue.h
+@@ -486,6 +486,15 @@
+             delete [] DELTA;
+             return L_value*exp(z-.5*log(OMEGA));
+         }
++
++        else // return L(s)
++        {
++            z=1;
++            for(j=1;j<=a;j++)
++                z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]);
++            delete [] DELTA;
++            return L_value*exp(-log(Q)*s)/z;
++        }
+     }
+ 
+ 
diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch
new file mode 100644
index 000000000000..d565490d98d3
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-2.7.patch
@@ -0,0 +1,67 @@
+--- src/src/Lcommandline_elliptic.cc	2010-01-31 16:16:45.000000000 +0100
++++ src/src/Lcommandline_elliptic.cc	2011-05-10 17:08:10.000000000 +0200
+@@ -121,11 +121,11 @@
+ 
+ 
+     F = cgetg(6, t_VEC);
+-    F[1] = lgeti(BIGDEFAULTPREC);
+-    F[2] = lgeti(BIGDEFAULTPREC);
+-    F[3] = lgeti(BIGDEFAULTPREC);
+-    F[4] = lgeti(BIGDEFAULTPREC);
+-    F[5] = lgeti(BIGDEFAULTPREC);
++    F[1] = (long)cgeti(BIGDEFAULTPREC);
++    F[2] = (long)cgeti(BIGDEFAULTPREC);
++    F[3] = (long)cgeti(BIGDEFAULTPREC);
++    F[4] = (long)cgeti(BIGDEFAULTPREC);
++    F[5] = (long)cgeti(BIGDEFAULTPREC);
+ 
+     //gaffsg(a1,(GEN) F[1]);
+     //gaffsg(a2,(GEN) F[2]);
+@@ -133,15 +133,15 @@
+     //gaffsg(a4,(GEN) F[4]);
+     //gaffsg(a6,(GEN) F[5]);
+ 
+-    gaffect(strtoGEN(a1), (GEN) F[1]);
+-    gaffect(strtoGEN(a2), (GEN) F[2]);
+-    gaffect(strtoGEN(a3), (GEN) F[3]);
+-    gaffect(strtoGEN(a4), (GEN) F[4]);
+-    gaffect(strtoGEN(a6), (GEN) F[5]);
++    gaffect(gp_read_str(a1), (GEN) F[1]);
++    gaffect(gp_read_str(a2), (GEN) F[2]);
++    gaffect(gp_read_str(a3), (GEN) F[3]);
++    gaffect(gp_read_str(a4), (GEN) F[4]);
++    gaffect(gp_read_str(a6), (GEN) F[5]);
+ 
+-    E = initell(F,BIGDEFAULTPREC);
++    E = ellinit(F, NULL, BIGDEFAULTPREC);
+ 
+-    C=globalreduction(E);
++    C=ellglobalred(E);
+ 
+     x=gtodouble((GEN) C[1]);
+ 
+@@ -167,8 +167,8 @@
+ 
+             p=n;
+             gaffsg(p,y);
+-            coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p));
+-            //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p));
++            coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p));
++            //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p));
+ 
+             if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction
+             {
+diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc
+--- src/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ b/src/Lcommandline.cc	2014-01-06 14:02:19.463388366 +0100
+@@ -473,7 +473,9 @@
+ 
+ #ifdef INCLUDE_PARI
+         if(do_elliptic_curve){
+-             allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++             // Reallocate PARI stack
++             paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++
+              if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl;
+              initialize_new_L(a1,a2,a3,a4,a6,N_terms); 
+         }
diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch
new file mode 100644
index 000000000000..1566681a909b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-mem.patch
@@ -0,0 +1,24 @@
+Use a much smaller PARI stack size for starting up
+
+Actually 1MB is sufficient, so there is plenty of margin
+with the 16MB in this patch
+
+See https://trac.sagemath.org/ticket/24516
+
+diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc
+--- lcalc-1.23/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ lcalc-1.23-patched//src/Lcommandline.cc	2018-01-30 11:23:06.975418539 +0100
+@@ -412,12 +412,7 @@
+ 
+             t2=.5; //t2=.5 because of the GAMMA(s+1/2)
+ 
+-            pari_init(1000000000,2);
+-            //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent
+-            //pari from giving its interrupt signal when its elliptic curve a_p
+-            //algorithm is called and interrupted with ctrl-c. Requires a more current
+-            //version of pari, so use pari_init above until I have a configure set up
+-            //that detects which pari, if any, is installed.
++            pari_init_opts(16000000, 2, INIT_DFTm);
+ 
+             coeff = new Double[3];
+             //compute the conductor which is copied to coeff[1]
diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch
new file mode 100644
index 000000000000..8ad1cc1cc43a
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari_include.patch
@@ -0,0 +1,30 @@
+Notes:
+Use a standard include path for pari. It means there is no need
+to specify an include path when pari headers are in a standard location.
+
+diff --git a/include/Lcommandline.h b/include/Lcommandline.h
+index 6537e98..5e63e4e 100644
+--- a/include/Lcommandline.h
++++ b/include/Lcommandline.h
+@@ -39,7 +39,7 @@
+ 
+ #include "Lcommandline_globals.h"      //command line global variables
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
+diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h
+index 17fa42c..7d80208 100644
+--- a/include/Lcommandline_elliptic.h
++++ b/include/Lcommandline_elliptic.h
+@@ -32,7 +32,7 @@
+ 
+ 
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions 
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch
new file mode 100644
index 000000000000..6d733ffd7115
--- /dev/null
+++ b/srcpkgs/lcalc/patches/using_namespace_std.patch
@@ -0,0 +1,41 @@
+diff --git a/include/Lcommon.h b/include/Lcommon.h
+index 1b3be43..bf40532 100644
+--- a/include/Lcommon.h
++++ b/include/Lcommon.h
+@@ -48,7 +48,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
+index 86ae4df..33c560c 100644
+--- a/include/Lcommon_ld.h
++++ b/include/Lcommon_ld.h
+@@ -53,7 +53,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lglobals.h b/include/Lglobals.h
+index 60002e4..ca2606c 100644
+--- a/include/Lglobals.h
++++ b/include/Lglobals.h
+@@ -24,9 +24,9 @@
+ #ifndef Lglobals_H
+ #define Lglobals_H
+ 
++#include <valarray>
+ using namespace std;
+ 
+-#include <valarray>
+ #ifdef USE_MPFR
+     #include "Lgmpfrxx.h"
+     typedef mpfr_class Double;
diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
new file mode 100644
index 000000000000..d724b524f992
--- /dev/null
+++ b/srcpkgs/lcalc/template
@@ -0,0 +1,45 @@
+# Template file for 'lcalc'
+pkgname=lcalc
+version=1.23
+revision=1
+build_wrksrc="src"
+build_style="gnu-makefile"
+makedepends="pari-devel"
+short_desc="Michael Rubinstein's L-function calculator"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
+license="GPL-2.0-or-later"
+homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/"
+distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2"
+checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0
+patch_args="-Np1"
+nocross=yes
+
+pre_build() {
+	CC="$CXX"
+	LDFLAGS+=" -lpari"
+	make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI"
+}
+
+pre_install() {
+	mkdir -p ${DESTDIR}/usr/{bin,lib,include}
+	make_install_args+=" INSTALL_DIR=${DESTDIR}/usr"
+}
+
+do_check() {
+	echo "Testing lcalc ..."
+	. "${FILESDIR}/test" > test.log
+	case "$XBPS_TARGET_MACHINE" in
+		i686) 	OUT="${FILESDIR}/test.i686" ;;
+		*-musl) OUT="${FILESDIR}/test.musl" ;;
+		*) 	OUT="${FILESDIR}/test.out" ;;
+	esac
+	diff "$OUT" test.log && echo PASS
+}
+
+lcalc-devel_package() {
+	short_desc+=" - development files"
+	pkg_install() {
+		vmove "usr/lib"
+		vmove "usr/include"
+	}
+}

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
  2021-04-06  5:21 ` [PR PATCH] [Updated] " tornaria
@ 2021-04-07 12:56 ` dkwo
  2021-04-07 17:54 ` [PR REVIEW] " Chocimier
                   ` (31 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: dkwo @ 2021-04-07 12:56 UTC (permalink / raw)
  To: ml

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New comment by dkwo on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-814891170

Comment:
Did not test it in `sage`, but it builds fine for me.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
  2021-04-06  5:21 ` [PR PATCH] [Updated] " tornaria
  2021-04-07 12:56 ` dkwo
@ 2021-04-07 17:54 ` Chocimier
  2021-04-07 17:54 ` Chocimier
                   ` (30 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: Chocimier @ 2021-04-07 17:54 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 233 bytes --]

New review comment by Chocimier on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r608871300

Comment:
Cross builds fine after patching `libLfunction.so: g++` to `libLfunction.so: $(CC)` 

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (2 preceding siblings ...)
  2021-04-07 17:54 ` [PR REVIEW] " Chocimier
@ 2021-04-07 17:54 ` Chocimier
  2021-04-07 17:56 ` ericonr
                   ` (29 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: Chocimier @ 2021-04-07 17:54 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 268 bytes --]

New review comment by Chocimier on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r608871323

Comment:
I don't like hardcoding per architecture, but also don't see easy way to calculate relative error without perl or such.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (3 preceding siblings ...)
  2021-04-07 17:54 ` Chocimier
@ 2021-04-07 17:56 ` ericonr
  2021-04-07 18:01 ` ericonr
                   ` (28 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-07 17:56 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 197 bytes --]

New review comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r608873229

Comment:
Shouldn't it be `CXX`, since they are using `g++`?

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (4 preceding siblings ...)
  2021-04-07 17:56 ` ericonr
@ 2021-04-07 18:01 ` ericonr
  2021-04-07 20:11 ` tornaria
                   ` (27 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-07 18:01 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 315 bytes --]

New review comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r608876420

Comment:
Re. my comment below, I'd rather have perl in `hostmakedepends` than the vendored test results (which would also break if the example program changes anything, right?).

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (5 preceding siblings ...)
  2021-04-07 18:01 ` ericonr
@ 2021-04-07 20:11 ` tornaria
  2021-04-07 20:16 ` tornaria
                   ` (26 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-07 20:11 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 1822 bytes --]

New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815220499

Comment:
General answer to all comments above:
- This program is kind of old and not maintained by the author. It works and it's useful in what it does, but it should be treated mostly as frozen (so, I doubt example programs will change).
- It's included and used in sagemath, which I used as upstream, they will do maintenance if pari changes (I can do it as well).
- patches came mostly from sagemath (https://git.sagemath.org/sage.git/tree/build/pkgs/lcalc/patches)
- I did this in 2018 and I just noticed they have updated patches, in particular there is some makefile cleanup that might be nice to have (like using $(CXX), etc, so cross build will work as noted above).
-  I could update it to have *exactly* the same patches as in sagemath (either included in or as distfiles from a stable tag of the git repo above) and think of sagemath as the upstream.
- The test is just some quick hack I did to know the program worked ok. I can make it smaller if that makes it more palatable. I think at least knowing that the binary runs and that the library can be linked to is good, but maybe instead of computing 1000 zeros of the Riemann zeta function I can just compute 10, etc.

Let me also point out that, other than sagemath, I don't think there will be any dependency of this program. But when we get to package sagemath, this program will have to be compiled, either as a separate package (like here) or as part of the omnibus sagemath.

Also: I rather spend my time and energy on packaging other -- more generally useful -- math software, than polishing too much this (niche) program. All criticism is still very much welcomed, I'm just starting with the "easy" packages.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (6 preceding siblings ...)
  2021-04-07 20:11 ` tornaria
@ 2021-04-07 20:16 ` tornaria
  2021-04-07 20:33 ` ericonr
                   ` (25 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-07 20:16 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 265 bytes --]

New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815228386

Comment:
More on patches: debian uses more or less the same set of patches (https://sources.debian.org/patches/lcalc/1.23+dfsg-11/).

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (7 preceding siblings ...)
  2021-04-07 20:16 ` tornaria
@ 2021-04-07 20:33 ` ericonr
  2021-04-07 20:49 ` tornaria
                   ` (24 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-07 20:33 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 1010 bytes --]

New comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815242908

Comment:
> I could update it to have exactly the same patches as in sagemath (either included in or as distfiles from a stable tag of the git repo above) and think of sagemath as the upstream.

I think the distfiles approach here would be best. Any local patches would go on top of that, and we avoid vendoring in a bunch of "basic" patches.

> But when we get to package sagemath, this program will have to be compiled, either as a separate package (like here) or as part of the omnibus sagemath.

Alternatively, **I** am ok with it being packaged inside of sagemath; it is, after all, the only user for it, so there are very few (if any - maybe it helps with cross builds?) benefits from splitting it into a separate package. Other maintainers might have other opinions on vendoring dependencies, even in this case, so don't consider my opinion the final recommendation.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (8 preceding siblings ...)
  2021-04-07 20:33 ` ericonr
@ 2021-04-07 20:49 ` tornaria
  2021-04-07 21:26 ` ericonr
                   ` (23 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-07 20:49 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 905 bytes --]

New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815253454

Comment:
> I think the distfiles approach here would be best. Any local patches would go on top of that, and we avoid 
vendoring in a bunch of "basic" patches.

Ok. What's a good way to do it? Patch in post_extract() ? Is there something automatic or some template doing that as an example?

> Alternatively, **I** am ok with it being packaged inside of sagemath; it is, after all, the only user for it, so there are very few (if any - maybe it helps with cross builds?) benefits from splitting it into a separate package. Other maintainers might have other opinions on vendoring dependencies, even in this case, so don't consider my opinion the final recommendation.

Well, **I** use it, sometimes. That's why I packaged it for myself a few years ago :-)






^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (9 preceding siblings ...)
  2021-04-07 20:49 ` tornaria
@ 2021-04-07 21:26 ` ericonr
  2021-04-07 22:10 ` [PR PATCH] [Updated] " tornaria
                   ` (22 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-07 21:26 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 501 bytes --]

New comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815275796

Comment:
The `linux5.11` template does it, for one. We chose to go with `pre_patch` there, but I think `post_extract` is equally valid.

> Well, I use it, sometimes. That's why I packaged it for myself a few years ago :-)

Ah, I guess that's reason enough to make it a system package, then ;)

Would be nice if sage released proper fully patched tarballs, though.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR PATCH] [Updated] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (10 preceding siblings ...)
  2021-04-07 21:26 ` ericonr
@ 2021-04-07 22:10 ` tornaria
  2021-04-07 22:16 ` tornaria
                   ` (21 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-07 22:10 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 476 bytes --]

There is an updated pull request by tornaria against master on the void-packages repository

https://github.com/tornaria/void-packages math-lcalc
https://github.com/void-linux/void-packages/pull/30036

Math package: lcalc-1.23
Michael Rubinstein's L-function calculator.

The long files are just tests. The 3 versions are almost the same except for a few minor rounding differences.

A patch file from https://github.com/void-linux/void-packages/pull/30036.patch is attached

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-math-lcalc-30036.patch --]
[-- Type: text/x-diff, Size: 258624 bytes --]

From 690db2a6b605aaf4d7419cfb326ec9c86841b3c3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Thu, 1 Feb 2018 16:32:51 -0300
Subject: [PATCH 1/2] New package: lcalc-1.23

---
 srcpkgs/lcalc-devel                           |    1 +
 srcpkgs/lcalc/files/test                      |   14 +
 srcpkgs/lcalc/files/test.i686                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.musl                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.out                  | 2102 +++++++++++++++++
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 +
 .../lcalc-1.23_default_parameters_1.patch     |   24 +
 .../lcalc-1.23_default_parameters_2.patch     |   56 +
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 +
 .../lcalc-1.23_fix-return-non-void.patch      |   20 +
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 +
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 +
 srcpkgs/lcalc/patches/pari_include.patch      |   30 +
 .../lcalc/patches/using_namespace_std.patch   |   41 +
 srcpkgs/lcalc/template                        |   45 +
 15 files changed, 6692 insertions(+)
 create mode 120000 srcpkgs/lcalc-devel
 create mode 100644 srcpkgs/lcalc/files/test
 create mode 100644 srcpkgs/lcalc/files/test.i686
 create mode 100644 srcpkgs/lcalc/files/test.musl
 create mode 100644 srcpkgs/lcalc/files/test.out
 create mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 create mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 create mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch
 create mode 100644 srcpkgs/lcalc/template

diff --git a/srcpkgs/lcalc-devel b/srcpkgs/lcalc-devel
new file mode 120000
index 000000000000..ec3437a2fb19
--- /dev/null
+++ b/srcpkgs/lcalc-devel
@@ -0,0 +1 @@
+lcalc
\ No newline at end of file
diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
new file mode 100644
index 000000000000..cbac6d8b324d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test
@@ -0,0 +1,14 @@
+echo "### First 1000 zeros of zeta function"
+./lcalc -z 1000
+echo
+echo "### Analytic rank of elliptic curve 5077a1"
+./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
+echo
+echo "### run example program"
+LD_LIBRARY_PATH=. example_programs/example
+echo
+echo "### test data files: zeros of data_mass"
+./lcalc -F example_data_files/data_maass -z 20
+echo
+echo "### test data files: zeros of data_tau"
+./lcalc -F example_data_files/data_tau -z 1000
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
new file mode 100644
index 000000000000..08872e4cc25f
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.i686
@@ -0,0 +1,2102 @@
+### First 1000 zeros of zeta function
+ 14.13472514173
+ 21.02203963877
+ 25.01085758015
+ 30.42487612586
+ 32.93506158774
+ 37.58617815883
+ 40.91871901215
+ 43.32707328091
+ 48.00515088117
+ 49.77383247767
+ 52.97032147771
+ 56.44624769706
+ 59.3470440026
+ 60.83177852461
+ 65.11254404808
+ 67.07981052949
+ 69.54640171117
+ 72.06715767448
+ 75.70469069908
+ 77.14484006887
+ 79.33737502025
+ 82.91038085409
+ 84.73549298052
+ 87.42527461313
+ 88.80911120763
+ 92.49189927056
+ 94.65134404052
+ 95.87063422825
+ 98.831194218194
+ 101.31785100573
+ 103.72553804048
+ 105.44662305233
+ 107.16861118428
+ 111.02953554317
+ 111.87465917699
+ 114.32022091545
+ 116.22668032086
+ 118.79078286598
+ 121.37012500242
+ 122.94682929355
+ 124.25681855435
+ 127.5166838796
+ 129.57870419996
+ 131.08768853093
+ 133.497737203
+ 134.75650975337
+ 138.11604205453
+ 139.73620895212
+ 141.12370740402
+ 143.11184580762
+ 146.00098248677
+ 147.42276534256
+ 150.05352042078
+ 150.92525761224
+ 153.0246938112
+ 156.11290929424
+ 157.59759181759
+ 158.84998817142
+ 161.1889641376
+ 163.03070968718
+ 165.5370691879
+ 167.1844399782
+ 169.0945154156
+ 169.9119764794
+ 173.4115365196
+ 174.7541915234
+ 176.4414342977
+ 178.3774077761
+ 179.9164840203
+ 182.2070784844
+ 184.8744678484
+ 185.5987836777
+ 187.2289225835
+ 189.416158656
+ 192.0266563607
+ 193.0797266038
+ 195.2653966795
+ 196.876481841
+ 198.0153096763
+ 201.2647519437
+ 202.4935945141
+ 204.1896718031
+ 205.3946972022
+ 207.9062588878
+ 209.5765097169
+ 211.6908625954
+ 213.3479193597
+ 214.5470447835
+ 216.1695385083
+ 219.067596349
+ 220.7149188393
+ 221.4307055547
+ 224.0070002546
+ 224.9833246696
+ 227.4214442797
+ 229.3374133055
+ 231.2501887005
+ 231.9872352532
+ 233.6934041789
+ 236.5242296658
+ 237.7698204809
+ 239.5554775733
+ 241.0491577962
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
+1.5
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+0
+0.8888888888889
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+-0.7071067811865
+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.musl b/srcpkgs/lcalc/files/test.musl
new file mode 100644
index 000000000000..5b1b4d8b978d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.musl
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
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+0
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+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.out b/srcpkgs/lcalc/files/test.out
new file mode 100644
index 000000000000..edae9c7f9381
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.out
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
+1.5
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+0
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+-0.7071067811865
+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch
new file mode 100644
index 000000000000..c6b5c0aaa39e
--- /dev/null
+++ b/srcpkgs/lcalc/patches/Lcommon.h.patch
@@ -0,0 +1,11 @@
+--- src/include/Lcommon.h	2010-01-31 15:16:45.000000000 +0000
++++ src/include/Lcommon.h	2011-03-08 21:19:11.849443238 +0000
+@@ -25,7 +25,7 @@
+ #ifdef USE_MPFR
+ inline double lcalc_to_double(const double& x) { return x; }
+ #endif
+-//inline double lcalc_to_double(const long double& x) { return x; }
++inline double lcalc_to_double(const long double& x) { return x; }
+ inline double lcalc_to_double(const int& x) { return x; }
+ inline double lcalc_to_double(const long long& x) { return x; }
+ inline double lcalc_to_double(const short& x) { return x; }
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
new file mode 100644
index 000000000000..b94fc72d18a5
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
@@ -0,0 +1,24 @@
+diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
+--- lcalc-1.23-vanilla/include/Ldirichlet_series.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h	2014-04-21 14:37:59.027464849 +0200
+@@ -43,7 +43,7 @@
+  //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
+ template <class ttype>
+ Complex L_function <ttype>::
+-dirichlet_series(Complex s, long long N=-1)
++dirichlet_series(Complex s, long long N)
+ {
+     Complex z=0.;
+     long long m,n;
+diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
+--- lcalc-1.23-vanilla/include/L.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/L.h	2014-04-21 14:32:04.003467348 +0200
+@@ -491,7 +491,7 @@
+ 
+     //#include "Ldirichlet_series.h" //for computing Dirichlet series
+     Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
+-    Complex dirichlet_series(Complex s, long long N);
++    Complex dirichlet_series(Complex s, long long N=-1LL);
+ 
+     //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
+     //void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
new file mode 100644
index 000000000000..f5fd45358d0b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
@@ -0,0 +1,56 @@
+--- lcalc-1.23/include/Lgamma.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23/include/Lgamma.h	2014-05-18 21:15:27.786889718 +0200
+@@ -77,7 +77,7 @@
+ //n=0 should just give log_GAMMA(z)... thus making log_GAMMA
+ //code obsolete. But leave log_GAMMA intact anyways.
+ template <class ttype>
+-precise(ttype) log_GAMMA (ttype z,int n=0)
++precise(ttype) log_GAMMA (ttype z,int n)
+ {
+     int M;
+     precise(ttype) log_G,r,r2,y;
+@@ -230,7 +230,7 @@
+ //value exp_w which holds exp(-w)
+ //computes G(z,w), so there's an extra w^(-z) factor.
+ template <class ttype>
+-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
+ {
+ 
+     Complex G;
+@@ -334,7 +334,7 @@
+ 
+ 
+ template <class ttype>
+-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false)  //computes G(z,w) via continued fraction
++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via continued fraction
+ {
+ 
+         ttype G;
+@@ -424,7 +424,7 @@
+ }
+ 
+ template <class ttype>
+-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false)  //computes G(z,w) via asymptotic series
++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via asymptotic series
+ {
+ 
+         if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
+@@ -446,7 +446,7 @@
+ 
+ 
+ template <class ttype>
+-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false)  //computes g(z,w)
++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle)  //computes g(z,w)
+ {
+ 
+     ttype g;
+@@ -604,7 +604,7 @@
+ }
+ 
+ template <class ttype>
+-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
+ {
+     Complex SUM=0;
+ 
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
new file mode 100644
index 000000000000..1640dda12bc4
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
@@ -0,0 +1,53 @@
+diff --git a/include/cmdline.h b/include/cmdline.h
+index 319920a..41967e1 100644
+--- a/include/cmdline.h
++++ b/include/cmdline.h
+@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info);
+ int cmdline_parser_required (struct gengetopt_args_info *args_info,
+   const char *prog_name);
+ 
+-extern char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
++extern const char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
+ 
+ 
+ #ifdef __cplusplus
+diff --git a/src/cmdline.c b/src/cmdline.c
+index 6daf7da..1087693 100644
+--- a/src/cmdline.c
++++ b/src/cmdline.c
+@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf
+                         struct cmdline_parser_params *params, const char *additional_error);
+ 
+ 
+-char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
++const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
+ 
+ static char *
+ gengetopt_strdup (const char *s);
+@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info)
+  * -2 if more than one value has matched
+  */
+ static int
+-check_possible_values(const char *val, char *values[])
++check_possible_values(const char *val, const char *values[])
+ {
+   int i, found, last;
+   size_t len;
+@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[])
+ 
+ 
+ static void
+-write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[])
++write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
+ {
+   int found = -1;
+   if (arg) {
+@@ -681,7 +681,7 @@ static char *package_name = 0;
+ static
+ int update_arg(void *field, char **orig_field,
+                unsigned int *field_given, unsigned int *prev_given, 
+-               char *value, char *possible_values[], const char *default_value,
++               char *value, const char *possible_values[], const char *default_value,
+                cmdline_parser_arg_type arg_type,
+                int check_ambiguity, int override,
+                int no_free, int multiple_option,
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
new file mode 100644
index 000000000000..23850bbfbd56
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
@@ -0,0 +1,20 @@
+diff --git a/include/Lvalue.h b/include/Lvalue.h
+index eef9ffa..01974c3 100644
+--- a/include/Lvalue.h
++++ b/include/Lvalue.h
+@@ -486,6 +486,15 @@
+             delete [] DELTA;
+             return L_value*exp(z-.5*log(OMEGA));
+         }
++
++        else // return L(s)
++        {
++            z=1;
++            for(j=1;j<=a;j++)
++                z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]);
++            delete [] DELTA;
++            return L_value*exp(-log(Q)*s)/z;
++        }
+     }
+ 
+ 
diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch
new file mode 100644
index 000000000000..d565490d98d3
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-2.7.patch
@@ -0,0 +1,67 @@
+--- src/src/Lcommandline_elliptic.cc	2010-01-31 16:16:45.000000000 +0100
++++ src/src/Lcommandline_elliptic.cc	2011-05-10 17:08:10.000000000 +0200
+@@ -121,11 +121,11 @@
+ 
+ 
+     F = cgetg(6, t_VEC);
+-    F[1] = lgeti(BIGDEFAULTPREC);
+-    F[2] = lgeti(BIGDEFAULTPREC);
+-    F[3] = lgeti(BIGDEFAULTPREC);
+-    F[4] = lgeti(BIGDEFAULTPREC);
+-    F[5] = lgeti(BIGDEFAULTPREC);
++    F[1] = (long)cgeti(BIGDEFAULTPREC);
++    F[2] = (long)cgeti(BIGDEFAULTPREC);
++    F[3] = (long)cgeti(BIGDEFAULTPREC);
++    F[4] = (long)cgeti(BIGDEFAULTPREC);
++    F[5] = (long)cgeti(BIGDEFAULTPREC);
+ 
+     //gaffsg(a1,(GEN) F[1]);
+     //gaffsg(a2,(GEN) F[2]);
+@@ -133,15 +133,15 @@
+     //gaffsg(a4,(GEN) F[4]);
+     //gaffsg(a6,(GEN) F[5]);
+ 
+-    gaffect(strtoGEN(a1), (GEN) F[1]);
+-    gaffect(strtoGEN(a2), (GEN) F[2]);
+-    gaffect(strtoGEN(a3), (GEN) F[3]);
+-    gaffect(strtoGEN(a4), (GEN) F[4]);
+-    gaffect(strtoGEN(a6), (GEN) F[5]);
++    gaffect(gp_read_str(a1), (GEN) F[1]);
++    gaffect(gp_read_str(a2), (GEN) F[2]);
++    gaffect(gp_read_str(a3), (GEN) F[3]);
++    gaffect(gp_read_str(a4), (GEN) F[4]);
++    gaffect(gp_read_str(a6), (GEN) F[5]);
+ 
+-    E = initell(F,BIGDEFAULTPREC);
++    E = ellinit(F, NULL, BIGDEFAULTPREC);
+ 
+-    C=globalreduction(E);
++    C=ellglobalred(E);
+ 
+     x=gtodouble((GEN) C[1]);
+ 
+@@ -167,8 +167,8 @@
+ 
+             p=n;
+             gaffsg(p,y);
+-            coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p));
+-            //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p));
++            coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p));
++            //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p));
+ 
+             if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction
+             {
+diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc
+--- src/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ b/src/Lcommandline.cc	2014-01-06 14:02:19.463388366 +0100
+@@ -473,7 +473,9 @@
+ 
+ #ifdef INCLUDE_PARI
+         if(do_elliptic_curve){
+-             allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++             // Reallocate PARI stack
++             paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++
+              if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl;
+              initialize_new_L(a1,a2,a3,a4,a6,N_terms); 
+         }
diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch
new file mode 100644
index 000000000000..1566681a909b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-mem.patch
@@ -0,0 +1,24 @@
+Use a much smaller PARI stack size for starting up
+
+Actually 1MB is sufficient, so there is plenty of margin
+with the 16MB in this patch
+
+See https://trac.sagemath.org/ticket/24516
+
+diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc
+--- lcalc-1.23/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ lcalc-1.23-patched//src/Lcommandline.cc	2018-01-30 11:23:06.975418539 +0100
+@@ -412,12 +412,7 @@
+ 
+             t2=.5; //t2=.5 because of the GAMMA(s+1/2)
+ 
+-            pari_init(1000000000,2);
+-            //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent
+-            //pari from giving its interrupt signal when its elliptic curve a_p
+-            //algorithm is called and interrupted with ctrl-c. Requires a more current
+-            //version of pari, so use pari_init above until I have a configure set up
+-            //that detects which pari, if any, is installed.
++            pari_init_opts(16000000, 2, INIT_DFTm);
+ 
+             coeff = new Double[3];
+             //compute the conductor which is copied to coeff[1]
diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch
new file mode 100644
index 000000000000..8ad1cc1cc43a
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari_include.patch
@@ -0,0 +1,30 @@
+Notes:
+Use a standard include path for pari. It means there is no need
+to specify an include path when pari headers are in a standard location.
+
+diff --git a/include/Lcommandline.h b/include/Lcommandline.h
+index 6537e98..5e63e4e 100644
+--- a/include/Lcommandline.h
++++ b/include/Lcommandline.h
+@@ -39,7 +39,7 @@
+ 
+ #include "Lcommandline_globals.h"      //command line global variables
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
+diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h
+index 17fa42c..7d80208 100644
+--- a/include/Lcommandline_elliptic.h
++++ b/include/Lcommandline_elliptic.h
+@@ -32,7 +32,7 @@
+ 
+ 
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions 
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch
new file mode 100644
index 000000000000..6d733ffd7115
--- /dev/null
+++ b/srcpkgs/lcalc/patches/using_namespace_std.patch
@@ -0,0 +1,41 @@
+diff --git a/include/Lcommon.h b/include/Lcommon.h
+index 1b3be43..bf40532 100644
+--- a/include/Lcommon.h
++++ b/include/Lcommon.h
+@@ -48,7 +48,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
+index 86ae4df..33c560c 100644
+--- a/include/Lcommon_ld.h
++++ b/include/Lcommon_ld.h
+@@ -53,7 +53,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lglobals.h b/include/Lglobals.h
+index 60002e4..ca2606c 100644
+--- a/include/Lglobals.h
++++ b/include/Lglobals.h
+@@ -24,9 +24,9 @@
+ #ifndef Lglobals_H
+ #define Lglobals_H
+ 
++#include <valarray>
+ using namespace std;
+ 
+-#include <valarray>
+ #ifdef USE_MPFR
+     #include "Lgmpfrxx.h"
+     typedef mpfr_class Double;
diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
new file mode 100644
index 000000000000..d724b524f992
--- /dev/null
+++ b/srcpkgs/lcalc/template
@@ -0,0 +1,45 @@
+# Template file for 'lcalc'
+pkgname=lcalc
+version=1.23
+revision=1
+build_wrksrc="src"
+build_style="gnu-makefile"
+makedepends="pari-devel"
+short_desc="Michael Rubinstein's L-function calculator"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
+license="GPL-2.0-or-later"
+homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/"
+distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2"
+checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0
+patch_args="-Np1"
+nocross=yes
+
+pre_build() {
+	CC="$CXX"
+	LDFLAGS+=" -lpari"
+	make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI"
+}
+
+pre_install() {
+	mkdir -p ${DESTDIR}/usr/{bin,lib,include}
+	make_install_args+=" INSTALL_DIR=${DESTDIR}/usr"
+}
+
+do_check() {
+	echo "Testing lcalc ..."
+	. "${FILESDIR}/test" > test.log
+	case "$XBPS_TARGET_MACHINE" in
+		i686) 	OUT="${FILESDIR}/test.i686" ;;
+		*-musl) OUT="${FILESDIR}/test.musl" ;;
+		*) 	OUT="${FILESDIR}/test.out" ;;
+	esac
+	diff "$OUT" test.log && echo PASS
+}
+
+lcalc-devel_package() {
+	short_desc+=" - development files"
+	pkg_install() {
+		vmove "usr/lib"
+		vmove "usr/include"
+	}
+}

From 75734708f6d670705c9b12672609ad29f6f2dffa Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Wed, 7 Apr 2021 19:09:58 -0300
Subject: [PATCH 2/2] lcalc: change patches, testing, enable cross

---
 srcpkgs/lcalc/files/test                      |    6 +-
 srcpkgs/lcalc/files/test.i686                 | 2102 -----------------
 srcpkgs/lcalc/files/test.musl                 | 2102 -----------------
 srcpkgs/lcalc/files/test.out                  | 1994 +---------------
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 -
 .../lcalc-1.23_default_parameters_1.patch     |   24 -
 .../lcalc-1.23_default_parameters_2.patch     |   56 -
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 -
 .../lcalc-1.23_fix-return-non-void.patch      |   20 -
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 -
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 -
 srcpkgs/lcalc/patches/pari_include.patch      |   30 -
 .../lcalc/patches/using_namespace_std.patch   |   41 -
 srcpkgs/lcalc/template                        |   57 +-
 14 files changed, 49 insertions(+), 6538 deletions(-)
 delete mode 100644 srcpkgs/lcalc/files/test.i686
 delete mode 100644 srcpkgs/lcalc/files/test.musl
 delete mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 delete mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch

diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
index cbac6d8b324d..d7f08e771829 100644
--- a/srcpkgs/lcalc/files/test
+++ b/srcpkgs/lcalc/files/test
@@ -1,5 +1,5 @@
 echo "### First 1000 zeros of zeta function"
-./lcalc -z 1000
+./lcalc -z 10
 echo
 echo "### Analytic rank of elliptic curve 5077a1"
 ./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
@@ -8,7 +8,7 @@ echo "### run example program"
 LD_LIBRARY_PATH=. example_programs/example
 echo
 echo "### test data files: zeros of data_mass"
-./lcalc -F example_data_files/data_maass -z 20
+./lcalc -F example_data_files/data_maass -z 10
 echo
 echo "### test data files: zeros of data_tau"
-./lcalc -F example_data_files/data_tau -z 1000
+./lcalc -F example_data_files/data_tau -z 10
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
deleted file mode 100644
index 08872e4cc25f..000000000000
--- a/srcpkgs/lcalc/files/test.i686
+++ /dev/null
@@ -1,2102 +0,0 @@
-### First 1000 zeros of zeta function
- 14.13472514173
- 21.02203963877
- 25.01085758015
- 30.42487612586
- 32.93506158774
- 37.58617815883
- 40.91871901215
- 43.32707328091
- 48.00515088117
- 49.77383247767
- 52.97032147771
- 56.44624769706
- 59.3470440026
- 60.83177852461
- 65.11254404808
- 67.07981052949
- 69.54640171117
- 72.06715767448
- 75.70469069908
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-
-### Analytic rank of elliptic curve 5077a1
-analytic rank equals 3
-
-### run example program
------------------------------------------------
-
-Name of L_function: zeta
-All coefficients are equal to 1
-
-Q = 0.564189583548
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0,0)
-
-
-number of poles (of the completed L function) = 2
-pole[1] =(1,0)    residue[1] =(1,0)
-pole[2] =(0,0)    residue[2] =(-1,0)
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L4
-number of dirichlet coefficients = 4
-coefficients are periodic
-b[1] = 1
-b[2] = 0
-b[3] = -1
-b[4] = 0
-
-Q = 1.1283791671
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L5
-number of dirichlet coefficients = 5
-coefficients are periodic
-b[1] = (1,0)
-b[2] = (0,1)
-b[3] = (-0,-1)
-b[4] = (-1,0)
-b[5] = (0,0)
-
-Q = 1.26156626101
-OMEGA = (0.850650808352,0.525731112119)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
-zeta(0.5,0) = (-1.46035450881,0)
-L4(0.5,0) = (0.6676914571896,0)
-L5(0.5,0) = (0.7637478801173,0.2169647675189)
-L4(1,0) = (0.7853981633975,0)
-L5(1,0) = (0.8648062659772,0.2041530661384)
-0.4285714285714
-1.5
-0.1666666666667
-0.6666666666667
-0.5714285714286
-0
-0.5714285714286
-0.5714285714286
-0
-0.8888888888889
-6.123031769112e-17
--0.7071067811865
-
-### test data files: zeros of data_mass
- 2.89772467827
- 5.59124531532
- 21.09037750873
- 23.15751048459
- 25.43930038984
- 29.18920671354
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- 45.22036201604
- 47.66072427933
- 48.81796648431
- 49.79846517638
- 51.37514501231
- 52.55988761653
-
-### test data files: zeros of data_tau
- 9.222379399921
- 13.90754986139
- 17.44277697823
- 19.65651314195
- 22.33610363721
- 25.27463654811
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diff --git a/srcpkgs/lcalc/files/test.musl b/srcpkgs/lcalc/files/test.musl
deleted file mode 100644
index 5b1b4d8b978d..000000000000
--- a/srcpkgs/lcalc/files/test.musl
+++ /dev/null
@@ -1,2102 +0,0 @@
-### First 1000 zeros of zeta function
- 14.13472514173
- 21.02203963877
- 25.01085758015
- 30.42487612586
- 32.93506158774
- 37.58617815883
- 40.91871901215
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- 1417.1028229338
- 1418.6969638525
- 1419.422480946
-
-### Analytic rank of elliptic curve 5077a1
-analytic rank equals 3
-
-### run example program
------------------------------------------------
-
-Name of L_function: zeta
-All coefficients are equal to 1
-
-Q = 0.564189583548
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0,0)
-
-
-number of poles (of the completed L function) = 2
-pole[1] =(1,0)    residue[1] =(1,0)
-pole[2] =(0,0)    residue[2] =(-1,0)
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L4
-number of dirichlet coefficients = 4
-coefficients are periodic
-b[1] = 1
-b[2] = 0
-b[3] = -1
-b[4] = 0
-
-Q = 1.1283791671
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L5
-number of dirichlet coefficients = 5
-coefficients are periodic
-b[1] = (1,0)
-b[2] = (0,1)
-b[3] = (-0,-1)
-b[4] = (-1,0)
-b[5] = (0,0)
-
-Q = 1.26156626101
-OMEGA = (0.850650808352,0.525731112119)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
-zeta(0.5,0) = (-1.46035450881,0)
-L4(0.5,0) = (0.6676914571896,0)
-L5(0.5,0) = (0.7637478801173,0.2169647675189)
-L4(1,0) = (0.7853981633975,0)
-L5(1,0) = (0.8648062659772,0.2041530661384)
-0.4285714285714
-1.5
-0.1666666666667
-0.6666666666667
-0.5714285714286
-0
-0.5714285714286
-0.5714285714286
-0
-0.8888888888889
-6.123233995737e-17
--0.7071067811865
-
-### test data files: zeros of data_mass
- 2.89772467827
- 5.59124531532
- 21.09037750873
- 23.15751048459
- 25.43930038984
- 29.18920671354
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- 45.22036201604
- 47.66072427933
- 48.81796648431
- 49.79846517638
- 51.37514501231
- 52.55988761653
-
-### test data files: zeros of data_tau
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- 13.90754986139
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diff --git a/srcpkgs/lcalc/files/test.out b/srcpkgs/lcalc/files/test.out
index edae9c7f9381..b3637a962326 100644
--- a/srcpkgs/lcalc/files/test.out
+++ b/srcpkgs/lcalc/files/test.out
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 ### Analytic rank of elliptic curve 5077a1
 analytic rank equals 3
@@ -1062,7 +72,7 @@ number of poles (of the completed L function) = 0
 zeta(0.5,0) = (-1.46035450881,0)
 L4(0.5,0) = (0.6676914571896,0)
 L5(0.5,0) = (0.7637478801173,0.2169647675189)
-L4(1,0) = (0.7853981633975,0)
+L4(1,0) = (0.7853981633974,0)
 L5(1,0) = (0.8648062659772,0.2041530661384)
 0.4285714285714
 1.5
@@ -1088,16 +98,6 @@ L5(1,0) = (0.8648062659772,0.2041530661384)
  32.45271823746
  34.02727968404
  36.93123719687
- 38.98709821794
- 40.46554901427
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- 43.05108147996
- 45.22036201604
- 47.66072427933
- 48.81796648431
- 49.79846517638
- 51.37514501231
- 52.55988761653
 
 ### test data files: zeros of data_tau
  9.222379399921
@@ -1110,993 +110,3 @@ L5(1,0) = (0.8648062659772,0.2041530661384)
  28.83168262419
  31.17820949836
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diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch
deleted file mode 100644
index c6b5c0aaa39e..000000000000
--- a/srcpkgs/lcalc/patches/Lcommon.h.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/include/Lcommon.h	2010-01-31 15:16:45.000000000 +0000
-+++ src/include/Lcommon.h	2011-03-08 21:19:11.849443238 +0000
-@@ -25,7 +25,7 @@
- #ifdef USE_MPFR
- inline double lcalc_to_double(const double& x) { return x; }
- #endif
--//inline double lcalc_to_double(const long double& x) { return x; }
-+inline double lcalc_to_double(const long double& x) { return x; }
- inline double lcalc_to_double(const int& x) { return x; }
- inline double lcalc_to_double(const long long& x) { return x; }
- inline double lcalc_to_double(const short& x) { return x; }
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
deleted file mode 100644
index b94fc72d18a5..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
---- lcalc-1.23-vanilla/include/Ldirichlet_series.h	2012-08-08 23:21:55.000000000 +0200
-+++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h	2014-04-21 14:37:59.027464849 +0200
-@@ -43,7 +43,7 @@
-  //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
- template <class ttype>
- Complex L_function <ttype>::
--dirichlet_series(Complex s, long long N=-1)
-+dirichlet_series(Complex s, long long N)
- {
-     Complex z=0.;
-     long long m,n;
-diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
---- lcalc-1.23-vanilla/include/L.h	2012-08-08 23:21:55.000000000 +0200
-+++ lcalc-1.23-fixed-gcc.4.9/include/L.h	2014-04-21 14:32:04.003467348 +0200
-@@ -491,7 +491,7 @@
- 
-     //#include "Ldirichlet_series.h" //for computing Dirichlet series
-     Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
--    Complex dirichlet_series(Complex s, long long N);
-+    Complex dirichlet_series(Complex s, long long N=-1LL);
- 
-     //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
-     //void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
deleted file mode 100644
index f5fd45358d0b..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
+++ /dev/null
@@ -1,56 +0,0 @@
---- lcalc-1.23/include/Lgamma.h	2012-08-08 23:21:55.000000000 +0200
-+++ lcalc-1.23/include/Lgamma.h	2014-05-18 21:15:27.786889718 +0200
-@@ -77,7 +77,7 @@
- //n=0 should just give log_GAMMA(z)... thus making log_GAMMA
- //code obsolete. But leave log_GAMMA intact anyways.
- template <class ttype>
--precise(ttype) log_GAMMA (ttype z,int n=0)
-+precise(ttype) log_GAMMA (ttype z,int n)
- {
-     int M;
-     precise(ttype) log_G,r,r2,y;
-@@ -230,7 +230,7 @@
- //value exp_w which holds exp(-w)
- //computes G(z,w), so there's an extra w^(-z) factor.
- template <class ttype>
--Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
-+Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
- {
- 
-     Complex G;
-@@ -334,7 +334,7 @@
- 
- 
- template <class ttype>
--ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false)  //computes G(z,w) via continued fraction
-+ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via continued fraction
- {
- 
-         ttype G;
-@@ -424,7 +424,7 @@
- }
- 
- template <class ttype>
--ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false)  //computes G(z,w) via asymptotic series
-+ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via asymptotic series
- {
- 
-         if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
-@@ -446,7 +446,7 @@
- 
- 
- template <class ttype>
--ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false)  //computes g(z,w)
-+ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle)  //computes g(z,w)
- {
- 
-     ttype g;
-@@ -604,7 +604,7 @@
- }
- 
- template <class ttype>
--Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
-+Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
- {
-     Complex SUM=0;
- 
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
deleted file mode 100644
index 1640dda12bc4..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
+++ /dev/null
@@ -1,53 +0,0 @@
-diff --git a/include/cmdline.h b/include/cmdline.h
-index 319920a..41967e1 100644
---- a/include/cmdline.h
-+++ b/include/cmdline.h
-@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info);
- int cmdline_parser_required (struct gengetopt_args_info *args_info,
-   const char *prog_name);
- 
--extern char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
-+extern const char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
- 
- 
- #ifdef __cplusplus
-diff --git a/src/cmdline.c b/src/cmdline.c
-index 6daf7da..1087693 100644
---- a/src/cmdline.c
-+++ b/src/cmdline.c
-@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf
-                         struct cmdline_parser_params *params, const char *additional_error);
- 
- 
--char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
-+const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
- 
- static char *
- gengetopt_strdup (const char *s);
-@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info)
-  * -2 if more than one value has matched
-  */
- static int
--check_possible_values(const char *val, char *values[])
-+check_possible_values(const char *val, const char *values[])
- {
-   int i, found, last;
-   size_t len;
-@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[])
- 
- 
- static void
--write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[])
-+write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
- {
-   int found = -1;
-   if (arg) {
-@@ -681,7 +681,7 @@ static char *package_name = 0;
- static
- int update_arg(void *field, char **orig_field,
-                unsigned int *field_given, unsigned int *prev_given, 
--               char *value, char *possible_values[], const char *default_value,
-+               char *value, const char *possible_values[], const char *default_value,
-                cmdline_parser_arg_type arg_type,
-                int check_ambiguity, int override,
-                int no_free, int multiple_option,
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
deleted file mode 100644
index 23850bbfbd56..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
+++ /dev/null
@@ -1,20 +0,0 @@
-diff --git a/include/Lvalue.h b/include/Lvalue.h
-index eef9ffa..01974c3 100644
---- a/include/Lvalue.h
-+++ b/include/Lvalue.h
-@@ -486,6 +486,15 @@
-             delete [] DELTA;
-             return L_value*exp(z-.5*log(OMEGA));
-         }
-+
-+        else // return L(s)
-+        {
-+            z=1;
-+            for(j=1;j<=a;j++)
-+                z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]);
-+            delete [] DELTA;
-+            return L_value*exp(-log(Q)*s)/z;
-+        }
-     }
- 
- 
diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch
deleted file mode 100644
index d565490d98d3..000000000000
--- a/srcpkgs/lcalc/patches/pari-2.7.patch
+++ /dev/null
@@ -1,67 +0,0 @@
---- src/src/Lcommandline_elliptic.cc	2010-01-31 16:16:45.000000000 +0100
-+++ src/src/Lcommandline_elliptic.cc	2011-05-10 17:08:10.000000000 +0200
-@@ -121,11 +121,11 @@
- 
- 
-     F = cgetg(6, t_VEC);
--    F[1] = lgeti(BIGDEFAULTPREC);
--    F[2] = lgeti(BIGDEFAULTPREC);
--    F[3] = lgeti(BIGDEFAULTPREC);
--    F[4] = lgeti(BIGDEFAULTPREC);
--    F[5] = lgeti(BIGDEFAULTPREC);
-+    F[1] = (long)cgeti(BIGDEFAULTPREC);
-+    F[2] = (long)cgeti(BIGDEFAULTPREC);
-+    F[3] = (long)cgeti(BIGDEFAULTPREC);
-+    F[4] = (long)cgeti(BIGDEFAULTPREC);
-+    F[5] = (long)cgeti(BIGDEFAULTPREC);
- 
-     //gaffsg(a1,(GEN) F[1]);
-     //gaffsg(a2,(GEN) F[2]);
-@@ -133,15 +133,15 @@
-     //gaffsg(a4,(GEN) F[4]);
-     //gaffsg(a6,(GEN) F[5]);
- 
--    gaffect(strtoGEN(a1), (GEN) F[1]);
--    gaffect(strtoGEN(a2), (GEN) F[2]);
--    gaffect(strtoGEN(a3), (GEN) F[3]);
--    gaffect(strtoGEN(a4), (GEN) F[4]);
--    gaffect(strtoGEN(a6), (GEN) F[5]);
-+    gaffect(gp_read_str(a1), (GEN) F[1]);
-+    gaffect(gp_read_str(a2), (GEN) F[2]);
-+    gaffect(gp_read_str(a3), (GEN) F[3]);
-+    gaffect(gp_read_str(a4), (GEN) F[4]);
-+    gaffect(gp_read_str(a6), (GEN) F[5]);
- 
--    E = initell(F,BIGDEFAULTPREC);
-+    E = ellinit(F, NULL, BIGDEFAULTPREC);
- 
--    C=globalreduction(E);
-+    C=ellglobalred(E);
- 
-     x=gtodouble((GEN) C[1]);
- 
-@@ -167,8 +167,8 @@
- 
-             p=n;
-             gaffsg(p,y);
--            coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p));
--            //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p));
-+            coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p));
-+            //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p));
- 
-             if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction
-             {
-diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc
---- src/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
-+++ b/src/Lcommandline.cc	2014-01-06 14:02:19.463388366 +0100
-@@ -473,7 +473,9 @@
- 
- #ifdef INCLUDE_PARI
-         if(do_elliptic_curve){
--             allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
-+             // Reallocate PARI stack
-+             paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
-+
-              if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl;
-              initialize_new_L(a1,a2,a3,a4,a6,N_terms); 
-         }
diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch
deleted file mode 100644
index 1566681a909b..000000000000
--- a/srcpkgs/lcalc/patches/pari-mem.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-Use a much smaller PARI stack size for starting up
-
-Actually 1MB is sufficient, so there is plenty of margin
-with the 16MB in this patch
-
-See https://trac.sagemath.org/ticket/24516
-
-diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc
---- lcalc-1.23/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
-+++ lcalc-1.23-patched//src/Lcommandline.cc	2018-01-30 11:23:06.975418539 +0100
-@@ -412,12 +412,7 @@
- 
-             t2=.5; //t2=.5 because of the GAMMA(s+1/2)
- 
--            pari_init(1000000000,2);
--            //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent
--            //pari from giving its interrupt signal when its elliptic curve a_p
--            //algorithm is called and interrupted with ctrl-c. Requires a more current
--            //version of pari, so use pari_init above until I have a configure set up
--            //that detects which pari, if any, is installed.
-+            pari_init_opts(16000000, 2, INIT_DFTm);
- 
-             coeff = new Double[3];
-             //compute the conductor which is copied to coeff[1]
diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch
deleted file mode 100644
index 8ad1cc1cc43a..000000000000
--- a/srcpkgs/lcalc/patches/pari_include.patch
+++ /dev/null
@@ -1,30 +0,0 @@
-Notes:
-Use a standard include path for pari. It means there is no need
-to specify an include path when pari headers are in a standard location.
-
-diff --git a/include/Lcommandline.h b/include/Lcommandline.h
-index 6537e98..5e63e4e 100644
---- a/include/Lcommandline.h
-+++ b/include/Lcommandline.h
-@@ -39,7 +39,7 @@
- 
- #include "Lcommandline_globals.h"      //command line global variables
- #ifdef INCLUDE_PARI
--#include "pari.h"          //for pari's elliptic curve functions
-+#include "pari/pari.h"          //for pari's elliptic curve functions
- #undef init                //pari has a '#define init pari_init' which
-                            //causes trouble with the stream.h init.
-                            //pari also causes trouble with things like abs.
-diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h
-index 17fa42c..7d80208 100644
---- a/include/Lcommandline_elliptic.h
-+++ b/include/Lcommandline_elliptic.h
-@@ -32,7 +32,7 @@
- 
- 
- #ifdef INCLUDE_PARI
--#include "pari.h"          //for pari's elliptic curve functions 
-+#include "pari/pari.h"          //for pari's elliptic curve functions
- #undef init                //pari has a '#define init pari_init' which
-                            //causes trouble with the stream.h init.
-                            //pari also causes trouble with things like abs.
diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch
deleted file mode 100644
index 6d733ffd7115..000000000000
--- a/srcpkgs/lcalc/patches/using_namespace_std.patch
+++ /dev/null
@@ -1,41 +0,0 @@
-diff --git a/include/Lcommon.h b/include/Lcommon.h
-index 1b3be43..bf40532 100644
---- a/include/Lcommon.h
-+++ b/include/Lcommon.h
-@@ -48,7 +48,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
- 
- // Loop i from m to n
- // Useful in tidying up most for loops
--#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
-+#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
- 
- // A class for calculations involving polynomials of small degree
- // Not efficient enough for huge polynomials
-diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
-index 86ae4df..33c560c 100644
---- a/include/Lcommon_ld.h
-+++ b/include/Lcommon_ld.h
-@@ -53,7 +53,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
- 
- // Loop i from m to n
- // Useful in tidying up most for loops
--#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
-+#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
- 
- // A class for calculations involving polynomials of small degree
- // Not efficient enough for huge polynomials
-diff --git a/include/Lglobals.h b/include/Lglobals.h
-index 60002e4..ca2606c 100644
---- a/include/Lglobals.h
-+++ b/include/Lglobals.h
-@@ -24,9 +24,9 @@
- #ifndef Lglobals_H
- #define Lglobals_H
- 
-+#include <valarray>
- using namespace std;
- 
--#include <valarray>
- #ifdef USE_MPFR
-     #include "Lgmpfrxx.h"
-     typedef mpfr_class Double;
diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
index d724b524f992..19396f11643c 100644
--- a/srcpkgs/lcalc/template
+++ b/srcpkgs/lcalc/template
@@ -4,20 +4,56 @@ version=1.23
 revision=1
 build_wrksrc="src"
 build_style="gnu-makefile"
-makedepends="pari-devel"
+makedepends="gmp-devel pari-devel"
 short_desc="Michael Rubinstein's L-function calculator"
 maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
 license="GPL-2.0-or-later"
 homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/"
 distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2"
 checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0
-patch_args="-Np1"
-nocross=yes
+
+# get patches from sagemath
+_patchurl="https://git.sagemath.org/sage.git/plain/build/pkgs/lcalc/patches"
+_patchtag="?h=9.3.rc2"
+_patches="
+ Lcommon.h.patch
+ Lvalue.h.patch
+ Makefile.patch
+ clang.patch
+ lcalc-1.23_default_parameters_1.patch
+ lcalc-1.23_default_parameters_2.patch
+ pari-2.7.patch
+ pari-mem.patch
+ pari_include.patch
+ time.h.patch
+ using_namespace_std.patch
+"
+checksum+="
+ bd39a43b24a332e1826e667f85ca2ce2ca14749d56f60069cd886c96f55e9e3c
+ d8c660f68f33b6eeb4b801d4028faaaaccbfff5797efe654bb6367e0a687542d
+ dadf6fc6d481595cb041f8b0dd92bc2e2bc390cbb3e0dd36b7fe63b74942db26
+ 342cde1c9effda48597bfee439acb37c91458a100580c97c84da6a142d2cc5b6
+ 55c6c9f969593f24c75a85e7a150b876671356aa68ceb8e77c563a645897643e
+ 906ef33de15bb0d94883b7797d8cb3c889b9f59bceebeb171e65f1546faf1c37
+ 437e3870342ef4cb5749398ead9381504403e7e1f99efadab95f4a607678b400
+ 6471f2f30497486e289fc8977cbb89c495cf0d5ff58af2b1f479a497a28165e6
+ dde1f80b0ca42fb43917c24e6016c19e4a8d28de9c50cd0a523a318866bdc0eb
+ 941d4ac025f5d6f0142fb785b27f7a221729466dc83d45fd206cce102c012eaf
+ 045f23ea9131b8039001c8f13d22152f7b3c2e91adcf8c555354eaf39e7a7b48
+"
+for patch in $_patches ; do
+	distfiles+=" ${_patchurl}/${patch}${_patchtag}>${patch}"
+done
+skip_extraction="$_patches"
+
+post_extract() {
+	for patch in $_patches ; do
+		patch -p1 < "$XBPS_SRCDISTDIR/${pkgname}-${version}/${patch}"
+	done
+}
 
 pre_build() {
-	CC="$CXX"
-	LDFLAGS+=" -lpari"
-	make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI"
+	CXXFLAGS="-fPIC"
 }
 
 pre_install() {
@@ -27,13 +63,8 @@ pre_install() {
 
 do_check() {
 	echo "Testing lcalc ..."
-	. "${FILESDIR}/test" > test.log
-	case "$XBPS_TARGET_MACHINE" in
-		i686) 	OUT="${FILESDIR}/test.i686" ;;
-		*-musl) OUT="${FILESDIR}/test.musl" ;;
-		*) 	OUT="${FILESDIR}/test.out" ;;
-	esac
-	diff "$OUT" test.log && echo PASS
+	sh "${FILESDIR}"/test > test.log
+	diff "${FILESDIR}"/test.out test.log && echo PASS
 }
 
 lcalc-devel_package() {

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (11 preceding siblings ...)
  2021-04-07 22:10 ` [PR PATCH] [Updated] " tornaria
@ 2021-04-07 22:16 ` tornaria
  2021-04-07 22:24 ` tornaria
                   ` (20 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-07 22:16 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 419 bytes --]

New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815298874

Comment:
@ericonr 
See what you think.

Summary of changes:
- patches come from sagemath as distfiles, I don't need to patch any further than that.
- test.out is now 112 lines and the same for all architectures
- saner makefile (from new sagemath patches), cross compilation works

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (12 preceding siblings ...)
  2021-04-07 22:16 ` tornaria
@ 2021-04-07 22:24 ` tornaria
  2021-04-08  0:46 ` [PR REVIEW] " ericonr
                   ` (19 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-07 22:24 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 332 bytes --]

New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815301688

Comment:
> Would be nice if sage released proper fully patched tarballs, though.

I think they used to but they have moved to including patches in the git repo and stocking the upstream tarballs.


^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (13 preceding siblings ...)
  2021-04-07 22:24 ` tornaria
@ 2021-04-08  0:46 ` ericonr
  2021-04-08  0:46 ` ericonr
                   ` (18 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-08  0:46 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 287 bytes --]

New review comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r609168054

Comment:
I'd recommend leaving this together with the initial checksum block; makes it possible for `xgensum` to update everything in one go as well.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (14 preceding siblings ...)
  2021-04-08  0:46 ` [PR REVIEW] " ericonr
@ 2021-04-08  0:46 ` ericonr
  2021-04-08  0:46 ` ericonr
                   ` (17 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-08  0:46 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 211 bytes --]

New review comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r609165280

Comment:
I think you can export this at the template top level just fine.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (16 preceding siblings ...)
  2021-04-08  0:46 ` ericonr
@ 2021-04-08  0:46 ` ericonr
  2021-04-08  0:47 ` ericonr
                   ` (15 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-08  0:46 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 254 bytes --]

New review comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r609167554

Comment:
Does sage use the binary or the library? If it's the library, I think it should go in the normal package...

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (15 preceding siblings ...)
  2021-04-08  0:46 ` ericonr
@ 2021-04-08  0:46 ` ericonr
  2021-04-08  0:46 ` ericonr
                   ` (16 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-08  0:46 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 429 bytes --]

New review comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r609168192

Comment:
```suggestion
_patches="
 Lcommon.h.patch
 Lvalue.h.patch
 Makefile.patch
 clang.patch
 lcalc-1.23_default_parameters_1.patch
 lcalc-1.23_default_parameters_2.patch
 pari-2.7.patch
 pari-mem.patch
 pari_include.patch
 time.h.patch
 using_namespace_std.patch"
```

Nit

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (17 preceding siblings ...)
  2021-04-08  0:46 ` ericonr
@ 2021-04-08  0:47 ` ericonr
  2021-04-08  1:06 ` [PR REVIEW] " tornaria
                   ` (14 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: ericonr @ 2021-04-08  0:47 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 250 bytes --]

New comment by ericonr on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#issuecomment-815366975

Comment:
Remember to squash the commits together later ;)

@Chocimier I'd appreciate a second look from you as well.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (18 preceding siblings ...)
  2021-04-08  0:47 ` ericonr
@ 2021-04-08  1:06 ` tornaria
  2021-04-08  1:06 ` tornaria
                   ` (13 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-08  1:06 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 155 bytes --]

New review comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r609176979

Comment:
Indeed.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (19 preceding siblings ...)
  2021-04-08  1:06 ` [PR REVIEW] " tornaria
@ 2021-04-08  1:06 ` tornaria
  2021-04-08  1:08 ` [PR PATCH] [Updated] " tornaria
                   ` (12 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-08  1:06 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 160 bytes --]

New review comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r609177320

Comment:
Sounds good.

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR PATCH] [Updated] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (20 preceding siblings ...)
  2021-04-08  1:06 ` tornaria
@ 2021-04-08  1:08 ` tornaria
  2021-04-08  1:16 ` [PR REVIEW] " tornaria
                   ` (11 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-08  1:08 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 476 bytes --]

There is an updated pull request by tornaria against master on the void-packages repository

https://github.com/tornaria/void-packages math-lcalc
https://github.com/void-linux/void-packages/pull/30036

Math package: lcalc-1.23
Michael Rubinstein's L-function calculator.

The long files are just tests. The 3 versions are almost the same except for a few minor rounding differences.

A patch file from https://github.com/void-linux/void-packages/pull/30036.patch is attached

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-math-lcalc-30036.patch --]
[-- Type: text/x-diff, Size: 259555 bytes --]

From 690db2a6b605aaf4d7419cfb326ec9c86841b3c3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Thu, 1 Feb 2018 16:32:51 -0300
Subject: [PATCH 1/3] New package: lcalc-1.23

---
 srcpkgs/lcalc-devel                           |    1 +
 srcpkgs/lcalc/files/test                      |   14 +
 srcpkgs/lcalc/files/test.i686                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.musl                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.out                  | 2102 +++++++++++++++++
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 +
 .../lcalc-1.23_default_parameters_1.patch     |   24 +
 .../lcalc-1.23_default_parameters_2.patch     |   56 +
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 +
 .../lcalc-1.23_fix-return-non-void.patch      |   20 +
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 +
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 +
 srcpkgs/lcalc/patches/pari_include.patch      |   30 +
 .../lcalc/patches/using_namespace_std.patch   |   41 +
 srcpkgs/lcalc/template                        |   45 +
 15 files changed, 6692 insertions(+)
 create mode 120000 srcpkgs/lcalc-devel
 create mode 100644 srcpkgs/lcalc/files/test
 create mode 100644 srcpkgs/lcalc/files/test.i686
 create mode 100644 srcpkgs/lcalc/files/test.musl
 create mode 100644 srcpkgs/lcalc/files/test.out
 create mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 create mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 create mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch
 create mode 100644 srcpkgs/lcalc/template

diff --git a/srcpkgs/lcalc-devel b/srcpkgs/lcalc-devel
new file mode 120000
index 000000000000..ec3437a2fb19
--- /dev/null
+++ b/srcpkgs/lcalc-devel
@@ -0,0 +1 @@
+lcalc
\ No newline at end of file
diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
new file mode 100644
index 000000000000..cbac6d8b324d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test
@@ -0,0 +1,14 @@
+echo "### First 1000 zeros of zeta function"
+./lcalc -z 1000
+echo
+echo "### Analytic rank of elliptic curve 5077a1"
+./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
+echo
+echo "### run example program"
+LD_LIBRARY_PATH=. example_programs/example
+echo
+echo "### test data files: zeros of data_mass"
+./lcalc -F example_data_files/data_maass -z 20
+echo
+echo "### test data files: zeros of data_tau"
+./lcalc -F example_data_files/data_tau -z 1000
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
new file mode 100644
index 000000000000..08872e4cc25f
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.i686
@@ -0,0 +1,2102 @@
+### First 1000 zeros of zeta function
+ 14.13472514173
+ 21.02203963877
+ 25.01085758015
+ 30.42487612586
+ 32.93506158774
+ 37.58617815883
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
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+0
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+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.musl b/srcpkgs/lcalc/files/test.musl
new file mode 100644
index 000000000000..5b1b4d8b978d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.musl
@@ -0,0 +1,2102 @@
+### First 1000 zeros of zeta function
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
+1.5
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+0
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+-0.7071067811865
+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.out b/srcpkgs/lcalc/files/test.out
new file mode 100644
index 000000000000..edae9c7f9381
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.out
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
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+0
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+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch
new file mode 100644
index 000000000000..c6b5c0aaa39e
--- /dev/null
+++ b/srcpkgs/lcalc/patches/Lcommon.h.patch
@@ -0,0 +1,11 @@
+--- src/include/Lcommon.h	2010-01-31 15:16:45.000000000 +0000
++++ src/include/Lcommon.h	2011-03-08 21:19:11.849443238 +0000
+@@ -25,7 +25,7 @@
+ #ifdef USE_MPFR
+ inline double lcalc_to_double(const double& x) { return x; }
+ #endif
+-//inline double lcalc_to_double(const long double& x) { return x; }
++inline double lcalc_to_double(const long double& x) { return x; }
+ inline double lcalc_to_double(const int& x) { return x; }
+ inline double lcalc_to_double(const long long& x) { return x; }
+ inline double lcalc_to_double(const short& x) { return x; }
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
new file mode 100644
index 000000000000..b94fc72d18a5
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
@@ -0,0 +1,24 @@
+diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
+--- lcalc-1.23-vanilla/include/Ldirichlet_series.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h	2014-04-21 14:37:59.027464849 +0200
+@@ -43,7 +43,7 @@
+  //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
+ template <class ttype>
+ Complex L_function <ttype>::
+-dirichlet_series(Complex s, long long N=-1)
++dirichlet_series(Complex s, long long N)
+ {
+     Complex z=0.;
+     long long m,n;
+diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
+--- lcalc-1.23-vanilla/include/L.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/L.h	2014-04-21 14:32:04.003467348 +0200
+@@ -491,7 +491,7 @@
+ 
+     //#include "Ldirichlet_series.h" //for computing Dirichlet series
+     Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
+-    Complex dirichlet_series(Complex s, long long N);
++    Complex dirichlet_series(Complex s, long long N=-1LL);
+ 
+     //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
+     //void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
new file mode 100644
index 000000000000..f5fd45358d0b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
@@ -0,0 +1,56 @@
+--- lcalc-1.23/include/Lgamma.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23/include/Lgamma.h	2014-05-18 21:15:27.786889718 +0200
+@@ -77,7 +77,7 @@
+ //n=0 should just give log_GAMMA(z)... thus making log_GAMMA
+ //code obsolete. But leave log_GAMMA intact anyways.
+ template <class ttype>
+-precise(ttype) log_GAMMA (ttype z,int n=0)
++precise(ttype) log_GAMMA (ttype z,int n)
+ {
+     int M;
+     precise(ttype) log_G,r,r2,y;
+@@ -230,7 +230,7 @@
+ //value exp_w which holds exp(-w)
+ //computes G(z,w), so there's an extra w^(-z) factor.
+ template <class ttype>
+-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
+ {
+ 
+     Complex G;
+@@ -334,7 +334,7 @@
+ 
+ 
+ template <class ttype>
+-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false)  //computes G(z,w) via continued fraction
++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via continued fraction
+ {
+ 
+         ttype G;
+@@ -424,7 +424,7 @@
+ }
+ 
+ template <class ttype>
+-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false)  //computes G(z,w) via asymptotic series
++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via asymptotic series
+ {
+ 
+         if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
+@@ -446,7 +446,7 @@
+ 
+ 
+ template <class ttype>
+-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false)  //computes g(z,w)
++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle)  //computes g(z,w)
+ {
+ 
+     ttype g;
+@@ -604,7 +604,7 @@
+ }
+ 
+ template <class ttype>
+-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
+ {
+     Complex SUM=0;
+ 
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
new file mode 100644
index 000000000000..1640dda12bc4
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
@@ -0,0 +1,53 @@
+diff --git a/include/cmdline.h b/include/cmdline.h
+index 319920a..41967e1 100644
+--- a/include/cmdline.h
++++ b/include/cmdline.h
+@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info);
+ int cmdline_parser_required (struct gengetopt_args_info *args_info,
+   const char *prog_name);
+ 
+-extern char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
++extern const char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
+ 
+ 
+ #ifdef __cplusplus
+diff --git a/src/cmdline.c b/src/cmdline.c
+index 6daf7da..1087693 100644
+--- a/src/cmdline.c
++++ b/src/cmdline.c
+@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf
+                         struct cmdline_parser_params *params, const char *additional_error);
+ 
+ 
+-char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
++const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
+ 
+ static char *
+ gengetopt_strdup (const char *s);
+@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info)
+  * -2 if more than one value has matched
+  */
+ static int
+-check_possible_values(const char *val, char *values[])
++check_possible_values(const char *val, const char *values[])
+ {
+   int i, found, last;
+   size_t len;
+@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[])
+ 
+ 
+ static void
+-write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[])
++write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
+ {
+   int found = -1;
+   if (arg) {
+@@ -681,7 +681,7 @@ static char *package_name = 0;
+ static
+ int update_arg(void *field, char **orig_field,
+                unsigned int *field_given, unsigned int *prev_given, 
+-               char *value, char *possible_values[], const char *default_value,
++               char *value, const char *possible_values[], const char *default_value,
+                cmdline_parser_arg_type arg_type,
+                int check_ambiguity, int override,
+                int no_free, int multiple_option,
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
new file mode 100644
index 000000000000..23850bbfbd56
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
@@ -0,0 +1,20 @@
+diff --git a/include/Lvalue.h b/include/Lvalue.h
+index eef9ffa..01974c3 100644
+--- a/include/Lvalue.h
++++ b/include/Lvalue.h
+@@ -486,6 +486,15 @@
+             delete [] DELTA;
+             return L_value*exp(z-.5*log(OMEGA));
+         }
++
++        else // return L(s)
++        {
++            z=1;
++            for(j=1;j<=a;j++)
++                z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]);
++            delete [] DELTA;
++            return L_value*exp(-log(Q)*s)/z;
++        }
+     }
+ 
+ 
diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch
new file mode 100644
index 000000000000..d565490d98d3
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-2.7.patch
@@ -0,0 +1,67 @@
+--- src/src/Lcommandline_elliptic.cc	2010-01-31 16:16:45.000000000 +0100
++++ src/src/Lcommandline_elliptic.cc	2011-05-10 17:08:10.000000000 +0200
+@@ -121,11 +121,11 @@
+ 
+ 
+     F = cgetg(6, t_VEC);
+-    F[1] = lgeti(BIGDEFAULTPREC);
+-    F[2] = lgeti(BIGDEFAULTPREC);
+-    F[3] = lgeti(BIGDEFAULTPREC);
+-    F[4] = lgeti(BIGDEFAULTPREC);
+-    F[5] = lgeti(BIGDEFAULTPREC);
++    F[1] = (long)cgeti(BIGDEFAULTPREC);
++    F[2] = (long)cgeti(BIGDEFAULTPREC);
++    F[3] = (long)cgeti(BIGDEFAULTPREC);
++    F[4] = (long)cgeti(BIGDEFAULTPREC);
++    F[5] = (long)cgeti(BIGDEFAULTPREC);
+ 
+     //gaffsg(a1,(GEN) F[1]);
+     //gaffsg(a2,(GEN) F[2]);
+@@ -133,15 +133,15 @@
+     //gaffsg(a4,(GEN) F[4]);
+     //gaffsg(a6,(GEN) F[5]);
+ 
+-    gaffect(strtoGEN(a1), (GEN) F[1]);
+-    gaffect(strtoGEN(a2), (GEN) F[2]);
+-    gaffect(strtoGEN(a3), (GEN) F[3]);
+-    gaffect(strtoGEN(a4), (GEN) F[4]);
+-    gaffect(strtoGEN(a6), (GEN) F[5]);
++    gaffect(gp_read_str(a1), (GEN) F[1]);
++    gaffect(gp_read_str(a2), (GEN) F[2]);
++    gaffect(gp_read_str(a3), (GEN) F[3]);
++    gaffect(gp_read_str(a4), (GEN) F[4]);
++    gaffect(gp_read_str(a6), (GEN) F[5]);
+ 
+-    E = initell(F,BIGDEFAULTPREC);
++    E = ellinit(F, NULL, BIGDEFAULTPREC);
+ 
+-    C=globalreduction(E);
++    C=ellglobalred(E);
+ 
+     x=gtodouble((GEN) C[1]);
+ 
+@@ -167,8 +167,8 @@
+ 
+             p=n;
+             gaffsg(p,y);
+-            coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p));
+-            //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p));
++            coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p));
++            //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p));
+ 
+             if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction
+             {
+diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc
+--- src/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ b/src/Lcommandline.cc	2014-01-06 14:02:19.463388366 +0100
+@@ -473,7 +473,9 @@
+ 
+ #ifdef INCLUDE_PARI
+         if(do_elliptic_curve){
+-             allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++             // Reallocate PARI stack
++             paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++
+              if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl;
+              initialize_new_L(a1,a2,a3,a4,a6,N_terms); 
+         }
diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch
new file mode 100644
index 000000000000..1566681a909b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-mem.patch
@@ -0,0 +1,24 @@
+Use a much smaller PARI stack size for starting up
+
+Actually 1MB is sufficient, so there is plenty of margin
+with the 16MB in this patch
+
+See https://trac.sagemath.org/ticket/24516
+
+diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc
+--- lcalc-1.23/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ lcalc-1.23-patched//src/Lcommandline.cc	2018-01-30 11:23:06.975418539 +0100
+@@ -412,12 +412,7 @@
+ 
+             t2=.5; //t2=.5 because of the GAMMA(s+1/2)
+ 
+-            pari_init(1000000000,2);
+-            //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent
+-            //pari from giving its interrupt signal when its elliptic curve a_p
+-            //algorithm is called and interrupted with ctrl-c. Requires a more current
+-            //version of pari, so use pari_init above until I have a configure set up
+-            //that detects which pari, if any, is installed.
++            pari_init_opts(16000000, 2, INIT_DFTm);
+ 
+             coeff = new Double[3];
+             //compute the conductor which is copied to coeff[1]
diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch
new file mode 100644
index 000000000000..8ad1cc1cc43a
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari_include.patch
@@ -0,0 +1,30 @@
+Notes:
+Use a standard include path for pari. It means there is no need
+to specify an include path when pari headers are in a standard location.
+
+diff --git a/include/Lcommandline.h b/include/Lcommandline.h
+index 6537e98..5e63e4e 100644
+--- a/include/Lcommandline.h
++++ b/include/Lcommandline.h
+@@ -39,7 +39,7 @@
+ 
+ #include "Lcommandline_globals.h"      //command line global variables
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
+diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h
+index 17fa42c..7d80208 100644
+--- a/include/Lcommandline_elliptic.h
++++ b/include/Lcommandline_elliptic.h
+@@ -32,7 +32,7 @@
+ 
+ 
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions 
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch
new file mode 100644
index 000000000000..6d733ffd7115
--- /dev/null
+++ b/srcpkgs/lcalc/patches/using_namespace_std.patch
@@ -0,0 +1,41 @@
+diff --git a/include/Lcommon.h b/include/Lcommon.h
+index 1b3be43..bf40532 100644
+--- a/include/Lcommon.h
++++ b/include/Lcommon.h
+@@ -48,7 +48,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
+index 86ae4df..33c560c 100644
+--- a/include/Lcommon_ld.h
++++ b/include/Lcommon_ld.h
+@@ -53,7 +53,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lglobals.h b/include/Lglobals.h
+index 60002e4..ca2606c 100644
+--- a/include/Lglobals.h
++++ b/include/Lglobals.h
+@@ -24,9 +24,9 @@
+ #ifndef Lglobals_H
+ #define Lglobals_H
+ 
++#include <valarray>
+ using namespace std;
+ 
+-#include <valarray>
+ #ifdef USE_MPFR
+     #include "Lgmpfrxx.h"
+     typedef mpfr_class Double;
diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
new file mode 100644
index 000000000000..d724b524f992
--- /dev/null
+++ b/srcpkgs/lcalc/template
@@ -0,0 +1,45 @@
+# Template file for 'lcalc'
+pkgname=lcalc
+version=1.23
+revision=1
+build_wrksrc="src"
+build_style="gnu-makefile"
+makedepends="pari-devel"
+short_desc="Michael Rubinstein's L-function calculator"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
+license="GPL-2.0-or-later"
+homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/"
+distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2"
+checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0
+patch_args="-Np1"
+nocross=yes
+
+pre_build() {
+	CC="$CXX"
+	LDFLAGS+=" -lpari"
+	make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI"
+}
+
+pre_install() {
+	mkdir -p ${DESTDIR}/usr/{bin,lib,include}
+	make_install_args+=" INSTALL_DIR=${DESTDIR}/usr"
+}
+
+do_check() {
+	echo "Testing lcalc ..."
+	. "${FILESDIR}/test" > test.log
+	case "$XBPS_TARGET_MACHINE" in
+		i686) 	OUT="${FILESDIR}/test.i686" ;;
+		*-musl) OUT="${FILESDIR}/test.musl" ;;
+		*) 	OUT="${FILESDIR}/test.out" ;;
+	esac
+	diff "$OUT" test.log && echo PASS
+}
+
+lcalc-devel_package() {
+	short_desc+=" - development files"
+	pkg_install() {
+		vmove "usr/lib"
+		vmove "usr/include"
+	}
+}

From 75734708f6d670705c9b12672609ad29f6f2dffa Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Wed, 7 Apr 2021 19:09:58 -0300
Subject: [PATCH 2/3] lcalc: change patches, testing, enable cross

---
 srcpkgs/lcalc/files/test                      |    6 +-
 srcpkgs/lcalc/files/test.i686                 | 2102 -----------------
 srcpkgs/lcalc/files/test.musl                 | 2102 -----------------
 srcpkgs/lcalc/files/test.out                  | 1994 +---------------
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 -
 .../lcalc-1.23_default_parameters_1.patch     |   24 -
 .../lcalc-1.23_default_parameters_2.patch     |   56 -
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 -
 .../lcalc-1.23_fix-return-non-void.patch      |   20 -
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 -
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 -
 srcpkgs/lcalc/patches/pari_include.patch      |   30 -
 .../lcalc/patches/using_namespace_std.patch   |   41 -
 srcpkgs/lcalc/template                        |   57 +-
 14 files changed, 49 insertions(+), 6538 deletions(-)
 delete mode 100644 srcpkgs/lcalc/files/test.i686
 delete mode 100644 srcpkgs/lcalc/files/test.musl
 delete mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 delete mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch

diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
index cbac6d8b324d..d7f08e771829 100644
--- a/srcpkgs/lcalc/files/test
+++ b/srcpkgs/lcalc/files/test
@@ -1,5 +1,5 @@
 echo "### First 1000 zeros of zeta function"
-./lcalc -z 1000
+./lcalc -z 10
 echo
 echo "### Analytic rank of elliptic curve 5077a1"
 ./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
@@ -8,7 +8,7 @@ echo "### run example program"
 LD_LIBRARY_PATH=. example_programs/example
 echo
 echo "### test data files: zeros of data_mass"
-./lcalc -F example_data_files/data_maass -z 20
+./lcalc -F example_data_files/data_maass -z 10
 echo
 echo "### test data files: zeros of data_tau"
-./lcalc -F example_data_files/data_tau -z 1000
+./lcalc -F example_data_files/data_tau -z 10
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
deleted file mode 100644
index 08872e4cc25f..000000000000
--- a/srcpkgs/lcalc/files/test.i686
+++ /dev/null
@@ -1,2102 +0,0 @@
-### First 1000 zeros of zeta function
- 14.13472514173
- 21.02203963877
- 25.01085758015
- 30.42487612586
- 32.93506158774
- 37.58617815883
- 40.91871901215
- 43.32707328091
- 48.00515088117
- 49.77383247767
- 52.97032147771
- 56.44624769706
- 59.3470440026
- 60.83177852461
- 65.11254404808
- 67.07981052949
- 69.54640171117
- 72.06715767448
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- 1417.1028229338
- 1418.6969638525
- 1419.422480946
-
-### Analytic rank of elliptic curve 5077a1
-analytic rank equals 3
-
-### run example program
------------------------------------------------
-
-Name of L_function: zeta
-All coefficients are equal to 1
-
-Q = 0.564189583548
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0,0)
-
-
-number of poles (of the completed L function) = 2
-pole[1] =(1,0)    residue[1] =(1,0)
-pole[2] =(0,0)    residue[2] =(-1,0)
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L4
-number of dirichlet coefficients = 4
-coefficients are periodic
-b[1] = 1
-b[2] = 0
-b[3] = -1
-b[4] = 0
-
-Q = 1.1283791671
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L5
-number of dirichlet coefficients = 5
-coefficients are periodic
-b[1] = (1,0)
-b[2] = (0,1)
-b[3] = (-0,-1)
-b[4] = (-1,0)
-b[5] = (0,0)
-
-Q = 1.26156626101
-OMEGA = (0.850650808352,0.525731112119)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
-zeta(0.5,0) = (-1.46035450881,0)
-L4(0.5,0) = (0.6676914571896,0)
-L5(0.5,0) = (0.7637478801173,0.2169647675189)
-L4(1,0) = (0.7853981633975,0)
-L5(1,0) = (0.8648062659772,0.2041530661384)
-0.4285714285714
-1.5
-0.1666666666667
-0.6666666666667
-0.5714285714286
-0
-0.5714285714286
-0.5714285714286
-0
-0.8888888888889
-6.123031769112e-17
--0.7071067811865
-
-### test data files: zeros of data_mass
- 2.89772467827
- 5.59124531532
- 21.09037750873
- 23.15751048459
- 25.43930038984
- 29.18920671354
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- 45.22036201604
- 47.66072427933
- 48.81796648431
- 49.79846517638
- 51.37514501231
- 52.55988761653
-
-### test data files: zeros of data_tau
- 9.222379399921
- 13.90754986139
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diff --git a/srcpkgs/lcalc/files/test.musl b/srcpkgs/lcalc/files/test.musl
deleted file mode 100644
index 5b1b4d8b978d..000000000000
--- a/srcpkgs/lcalc/files/test.musl
+++ /dev/null
@@ -1,2102 +0,0 @@
-### First 1000 zeros of zeta function
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-
-### Analytic rank of elliptic curve 5077a1
-analytic rank equals 3
-
-### run example program
------------------------------------------------
-
-Name of L_function: zeta
-All coefficients are equal to 1
-
-Q = 0.564189583548
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0,0)
-
-
-number of poles (of the completed L function) = 2
-pole[1] =(1,0)    residue[1] =(1,0)
-pole[2] =(0,0)    residue[2] =(-1,0)
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L4
-number of dirichlet coefficients = 4
-coefficients are periodic
-b[1] = 1
-b[2] = 0
-b[3] = -1
-b[4] = 0
-
-Q = 1.1283791671
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L5
-number of dirichlet coefficients = 5
-coefficients are periodic
-b[1] = (1,0)
-b[2] = (0,1)
-b[3] = (-0,-1)
-b[4] = (-1,0)
-b[5] = (0,0)
-
-Q = 1.26156626101
-OMEGA = (0.850650808352,0.525731112119)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
-zeta(0.5,0) = (-1.46035450881,0)
-L4(0.5,0) = (0.6676914571896,0)
-L5(0.5,0) = (0.7637478801173,0.2169647675189)
-L4(1,0) = (0.7853981633975,0)
-L5(1,0) = (0.8648062659772,0.2041530661384)
-0.4285714285714
-1.5
-0.1666666666667
-0.6666666666667
-0.5714285714286
-0
-0.5714285714286
-0.5714285714286
-0
-0.8888888888889
-6.123233995737e-17
--0.7071067811865
-
-### test data files: zeros of data_mass
- 2.89772467827
- 5.59124531532
- 21.09037750873
- 23.15751048459
- 25.43930038984
- 29.18920671354
- 31.06173948455
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- 45.22036201604
- 47.66072427933
- 48.81796648431
- 49.79846517638
- 51.37514501231
- 52.55988761653
-
-### test data files: zeros of data_tau
- 9.222379399921
- 13.90754986139
- 17.44277697823
- 19.65651314195
- 22.33610363721
- 25.27463654811
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diff --git a/srcpkgs/lcalc/files/test.out b/srcpkgs/lcalc/files/test.out
index edae9c7f9381..b3637a962326 100644
--- a/srcpkgs/lcalc/files/test.out
+++ b/srcpkgs/lcalc/files/test.out
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 ### Analytic rank of elliptic curve 5077a1
 analytic rank equals 3
@@ -1062,7 +72,7 @@ number of poles (of the completed L function) = 0
 zeta(0.5,0) = (-1.46035450881,0)
 L4(0.5,0) = (0.6676914571896,0)
 L5(0.5,0) = (0.7637478801173,0.2169647675189)
-L4(1,0) = (0.7853981633975,0)
+L4(1,0) = (0.7853981633974,0)
 L5(1,0) = (0.8648062659772,0.2041530661384)
 0.4285714285714
 1.5
@@ -1088,16 +98,6 @@ L5(1,0) = (0.8648062659772,0.2041530661384)
  32.45271823746
  34.02727968404
  36.93123719687
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- 45.22036201604
- 47.66072427933
- 48.81796648431
- 49.79846517638
- 51.37514501231
- 52.55988761653
 
 ### test data files: zeros of data_tau
  9.222379399921
@@ -1110,993 +110,3 @@ L5(1,0) = (0.8648062659772,0.2041530661384)
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  31.17820949836
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diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch
deleted file mode 100644
index c6b5c0aaa39e..000000000000
--- a/srcpkgs/lcalc/patches/Lcommon.h.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/include/Lcommon.h	2010-01-31 15:16:45.000000000 +0000
-+++ src/include/Lcommon.h	2011-03-08 21:19:11.849443238 +0000
-@@ -25,7 +25,7 @@
- #ifdef USE_MPFR
- inline double lcalc_to_double(const double& x) { return x; }
- #endif
--//inline double lcalc_to_double(const long double& x) { return x; }
-+inline double lcalc_to_double(const long double& x) { return x; }
- inline double lcalc_to_double(const int& x) { return x; }
- inline double lcalc_to_double(const long long& x) { return x; }
- inline double lcalc_to_double(const short& x) { return x; }
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
deleted file mode 100644
index b94fc72d18a5..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
---- lcalc-1.23-vanilla/include/Ldirichlet_series.h	2012-08-08 23:21:55.000000000 +0200
-+++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h	2014-04-21 14:37:59.027464849 +0200
-@@ -43,7 +43,7 @@
-  //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
- template <class ttype>
- Complex L_function <ttype>::
--dirichlet_series(Complex s, long long N=-1)
-+dirichlet_series(Complex s, long long N)
- {
-     Complex z=0.;
-     long long m,n;
-diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
---- lcalc-1.23-vanilla/include/L.h	2012-08-08 23:21:55.000000000 +0200
-+++ lcalc-1.23-fixed-gcc.4.9/include/L.h	2014-04-21 14:32:04.003467348 +0200
-@@ -491,7 +491,7 @@
- 
-     //#include "Ldirichlet_series.h" //for computing Dirichlet series
-     Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
--    Complex dirichlet_series(Complex s, long long N);
-+    Complex dirichlet_series(Complex s, long long N=-1LL);
- 
-     //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
-     //void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
deleted file mode 100644
index f5fd45358d0b..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
+++ /dev/null
@@ -1,56 +0,0 @@
---- lcalc-1.23/include/Lgamma.h	2012-08-08 23:21:55.000000000 +0200
-+++ lcalc-1.23/include/Lgamma.h	2014-05-18 21:15:27.786889718 +0200
-@@ -77,7 +77,7 @@
- //n=0 should just give log_GAMMA(z)... thus making log_GAMMA
- //code obsolete. But leave log_GAMMA intact anyways.
- template <class ttype>
--precise(ttype) log_GAMMA (ttype z,int n=0)
-+precise(ttype) log_GAMMA (ttype z,int n)
- {
-     int M;
-     precise(ttype) log_G,r,r2,y;
-@@ -230,7 +230,7 @@
- //value exp_w which holds exp(-w)
- //computes G(z,w), so there's an extra w^(-z) factor.
- template <class ttype>
--Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
-+Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
- {
- 
-     Complex G;
-@@ -334,7 +334,7 @@
- 
- 
- template <class ttype>
--ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false)  //computes G(z,w) via continued fraction
-+ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via continued fraction
- {
- 
-         ttype G;
-@@ -424,7 +424,7 @@
- }
- 
- template <class ttype>
--ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false)  //computes G(z,w) via asymptotic series
-+ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via asymptotic series
- {
- 
-         if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
-@@ -446,7 +446,7 @@
- 
- 
- template <class ttype>
--ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false)  //computes g(z,w)
-+ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle)  //computes g(z,w)
- {
- 
-     ttype g;
-@@ -604,7 +604,7 @@
- }
- 
- template <class ttype>
--Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
-+Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
- {
-     Complex SUM=0;
- 
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
deleted file mode 100644
index 1640dda12bc4..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
+++ /dev/null
@@ -1,53 +0,0 @@
-diff --git a/include/cmdline.h b/include/cmdline.h
-index 319920a..41967e1 100644
---- a/include/cmdline.h
-+++ b/include/cmdline.h
-@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info);
- int cmdline_parser_required (struct gengetopt_args_info *args_info,
-   const char *prog_name);
- 
--extern char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
-+extern const char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
- 
- 
- #ifdef __cplusplus
-diff --git a/src/cmdline.c b/src/cmdline.c
-index 6daf7da..1087693 100644
---- a/src/cmdline.c
-+++ b/src/cmdline.c
-@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf
-                         struct cmdline_parser_params *params, const char *additional_error);
- 
- 
--char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
-+const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
- 
- static char *
- gengetopt_strdup (const char *s);
-@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info)
-  * -2 if more than one value has matched
-  */
- static int
--check_possible_values(const char *val, char *values[])
-+check_possible_values(const char *val, const char *values[])
- {
-   int i, found, last;
-   size_t len;
-@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[])
- 
- 
- static void
--write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[])
-+write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
- {
-   int found = -1;
-   if (arg) {
-@@ -681,7 +681,7 @@ static char *package_name = 0;
- static
- int update_arg(void *field, char **orig_field,
-                unsigned int *field_given, unsigned int *prev_given, 
--               char *value, char *possible_values[], const char *default_value,
-+               char *value, const char *possible_values[], const char *default_value,
-                cmdline_parser_arg_type arg_type,
-                int check_ambiguity, int override,
-                int no_free, int multiple_option,
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
deleted file mode 100644
index 23850bbfbd56..000000000000
--- a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
+++ /dev/null
@@ -1,20 +0,0 @@
-diff --git a/include/Lvalue.h b/include/Lvalue.h
-index eef9ffa..01974c3 100644
---- a/include/Lvalue.h
-+++ b/include/Lvalue.h
-@@ -486,6 +486,15 @@
-             delete [] DELTA;
-             return L_value*exp(z-.5*log(OMEGA));
-         }
-+
-+        else // return L(s)
-+        {
-+            z=1;
-+            for(j=1;j<=a;j++)
-+                z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]);
-+            delete [] DELTA;
-+            return L_value*exp(-log(Q)*s)/z;
-+        }
-     }
- 
- 
diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch
deleted file mode 100644
index d565490d98d3..000000000000
--- a/srcpkgs/lcalc/patches/pari-2.7.patch
+++ /dev/null
@@ -1,67 +0,0 @@
---- src/src/Lcommandline_elliptic.cc	2010-01-31 16:16:45.000000000 +0100
-+++ src/src/Lcommandline_elliptic.cc	2011-05-10 17:08:10.000000000 +0200
-@@ -121,11 +121,11 @@
- 
- 
-     F = cgetg(6, t_VEC);
--    F[1] = lgeti(BIGDEFAULTPREC);
--    F[2] = lgeti(BIGDEFAULTPREC);
--    F[3] = lgeti(BIGDEFAULTPREC);
--    F[4] = lgeti(BIGDEFAULTPREC);
--    F[5] = lgeti(BIGDEFAULTPREC);
-+    F[1] = (long)cgeti(BIGDEFAULTPREC);
-+    F[2] = (long)cgeti(BIGDEFAULTPREC);
-+    F[3] = (long)cgeti(BIGDEFAULTPREC);
-+    F[4] = (long)cgeti(BIGDEFAULTPREC);
-+    F[5] = (long)cgeti(BIGDEFAULTPREC);
- 
-     //gaffsg(a1,(GEN) F[1]);
-     //gaffsg(a2,(GEN) F[2]);
-@@ -133,15 +133,15 @@
-     //gaffsg(a4,(GEN) F[4]);
-     //gaffsg(a6,(GEN) F[5]);
- 
--    gaffect(strtoGEN(a1), (GEN) F[1]);
--    gaffect(strtoGEN(a2), (GEN) F[2]);
--    gaffect(strtoGEN(a3), (GEN) F[3]);
--    gaffect(strtoGEN(a4), (GEN) F[4]);
--    gaffect(strtoGEN(a6), (GEN) F[5]);
-+    gaffect(gp_read_str(a1), (GEN) F[1]);
-+    gaffect(gp_read_str(a2), (GEN) F[2]);
-+    gaffect(gp_read_str(a3), (GEN) F[3]);
-+    gaffect(gp_read_str(a4), (GEN) F[4]);
-+    gaffect(gp_read_str(a6), (GEN) F[5]);
- 
--    E = initell(F,BIGDEFAULTPREC);
-+    E = ellinit(F, NULL, BIGDEFAULTPREC);
- 
--    C=globalreduction(E);
-+    C=ellglobalred(E);
- 
-     x=gtodouble((GEN) C[1]);
- 
-@@ -167,8 +167,8 @@
- 
-             p=n;
-             gaffsg(p,y);
--            coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p));
--            //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p));
-+            coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p));
-+            //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p));
- 
-             if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction
-             {
-diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc
---- src/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
-+++ b/src/Lcommandline.cc	2014-01-06 14:02:19.463388366 +0100
-@@ -473,7 +473,9 @@
- 
- #ifdef INCLUDE_PARI
-         if(do_elliptic_curve){
--             allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
-+             // Reallocate PARI stack
-+             paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
-+
-              if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl;
-              initialize_new_L(a1,a2,a3,a4,a6,N_terms); 
-         }
diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch
deleted file mode 100644
index 1566681a909b..000000000000
--- a/srcpkgs/lcalc/patches/pari-mem.patch
+++ /dev/null
@@ -1,24 +0,0 @@
-Use a much smaller PARI stack size for starting up
-
-Actually 1MB is sufficient, so there is plenty of margin
-with the 16MB in this patch
-
-See https://trac.sagemath.org/ticket/24516
-
-diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc
---- lcalc-1.23/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
-+++ lcalc-1.23-patched//src/Lcommandline.cc	2018-01-30 11:23:06.975418539 +0100
-@@ -412,12 +412,7 @@
- 
-             t2=.5; //t2=.5 because of the GAMMA(s+1/2)
- 
--            pari_init(1000000000,2);
--            //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent
--            //pari from giving its interrupt signal when its elliptic curve a_p
--            //algorithm is called and interrupted with ctrl-c. Requires a more current
--            //version of pari, so use pari_init above until I have a configure set up
--            //that detects which pari, if any, is installed.
-+            pari_init_opts(16000000, 2, INIT_DFTm);
- 
-             coeff = new Double[3];
-             //compute the conductor which is copied to coeff[1]
diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch
deleted file mode 100644
index 8ad1cc1cc43a..000000000000
--- a/srcpkgs/lcalc/patches/pari_include.patch
+++ /dev/null
@@ -1,30 +0,0 @@
-Notes:
-Use a standard include path for pari. It means there is no need
-to specify an include path when pari headers are in a standard location.
-
-diff --git a/include/Lcommandline.h b/include/Lcommandline.h
-index 6537e98..5e63e4e 100644
---- a/include/Lcommandline.h
-+++ b/include/Lcommandline.h
-@@ -39,7 +39,7 @@
- 
- #include "Lcommandline_globals.h"      //command line global variables
- #ifdef INCLUDE_PARI
--#include "pari.h"          //for pari's elliptic curve functions
-+#include "pari/pari.h"          //for pari's elliptic curve functions
- #undef init                //pari has a '#define init pari_init' which
-                            //causes trouble with the stream.h init.
-                            //pari also causes trouble with things like abs.
-diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h
-index 17fa42c..7d80208 100644
---- a/include/Lcommandline_elliptic.h
-+++ b/include/Lcommandline_elliptic.h
-@@ -32,7 +32,7 @@
- 
- 
- #ifdef INCLUDE_PARI
--#include "pari.h"          //for pari's elliptic curve functions 
-+#include "pari/pari.h"          //for pari's elliptic curve functions
- #undef init                //pari has a '#define init pari_init' which
-                            //causes trouble with the stream.h init.
-                            //pari also causes trouble with things like abs.
diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch
deleted file mode 100644
index 6d733ffd7115..000000000000
--- a/srcpkgs/lcalc/patches/using_namespace_std.patch
+++ /dev/null
@@ -1,41 +0,0 @@
-diff --git a/include/Lcommon.h b/include/Lcommon.h
-index 1b3be43..bf40532 100644
---- a/include/Lcommon.h
-+++ b/include/Lcommon.h
-@@ -48,7 +48,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
- 
- // Loop i from m to n
- // Useful in tidying up most for loops
--#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
-+#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
- 
- // A class for calculations involving polynomials of small degree
- // Not efficient enough for huge polynomials
-diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
-index 86ae4df..33c560c 100644
---- a/include/Lcommon_ld.h
-+++ b/include/Lcommon_ld.h
-@@ -53,7 +53,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
- 
- // Loop i from m to n
- // Useful in tidying up most for loops
--#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
-+#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
- 
- // A class for calculations involving polynomials of small degree
- // Not efficient enough for huge polynomials
-diff --git a/include/Lglobals.h b/include/Lglobals.h
-index 60002e4..ca2606c 100644
---- a/include/Lglobals.h
-+++ b/include/Lglobals.h
-@@ -24,9 +24,9 @@
- #ifndef Lglobals_H
- #define Lglobals_H
- 
-+#include <valarray>
- using namespace std;
- 
--#include <valarray>
- #ifdef USE_MPFR
-     #include "Lgmpfrxx.h"
-     typedef mpfr_class Double;
diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
index d724b524f992..19396f11643c 100644
--- a/srcpkgs/lcalc/template
+++ b/srcpkgs/lcalc/template
@@ -4,20 +4,56 @@ version=1.23
 revision=1
 build_wrksrc="src"
 build_style="gnu-makefile"
-makedepends="pari-devel"
+makedepends="gmp-devel pari-devel"
 short_desc="Michael Rubinstein's L-function calculator"
 maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
 license="GPL-2.0-or-later"
 homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/"
 distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2"
 checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0
-patch_args="-Np1"
-nocross=yes
+
+# get patches from sagemath
+_patchurl="https://git.sagemath.org/sage.git/plain/build/pkgs/lcalc/patches"
+_patchtag="?h=9.3.rc2"
+_patches="
+ Lcommon.h.patch
+ Lvalue.h.patch
+ Makefile.patch
+ clang.patch
+ lcalc-1.23_default_parameters_1.patch
+ lcalc-1.23_default_parameters_2.patch
+ pari-2.7.patch
+ pari-mem.patch
+ pari_include.patch
+ time.h.patch
+ using_namespace_std.patch
+"
+checksum+="
+ bd39a43b24a332e1826e667f85ca2ce2ca14749d56f60069cd886c96f55e9e3c
+ d8c660f68f33b6eeb4b801d4028faaaaccbfff5797efe654bb6367e0a687542d
+ dadf6fc6d481595cb041f8b0dd92bc2e2bc390cbb3e0dd36b7fe63b74942db26
+ 342cde1c9effda48597bfee439acb37c91458a100580c97c84da6a142d2cc5b6
+ 55c6c9f969593f24c75a85e7a150b876671356aa68ceb8e77c563a645897643e
+ 906ef33de15bb0d94883b7797d8cb3c889b9f59bceebeb171e65f1546faf1c37
+ 437e3870342ef4cb5749398ead9381504403e7e1f99efadab95f4a607678b400
+ 6471f2f30497486e289fc8977cbb89c495cf0d5ff58af2b1f479a497a28165e6
+ dde1f80b0ca42fb43917c24e6016c19e4a8d28de9c50cd0a523a318866bdc0eb
+ 941d4ac025f5d6f0142fb785b27f7a221729466dc83d45fd206cce102c012eaf
+ 045f23ea9131b8039001c8f13d22152f7b3c2e91adcf8c555354eaf39e7a7b48
+"
+for patch in $_patches ; do
+	distfiles+=" ${_patchurl}/${patch}${_patchtag}>${patch}"
+done
+skip_extraction="$_patches"
+
+post_extract() {
+	for patch in $_patches ; do
+		patch -p1 < "$XBPS_SRCDISTDIR/${pkgname}-${version}/${patch}"
+	done
+}
 
 pre_build() {
-	CC="$CXX"
-	LDFLAGS+=" -lpari"
-	make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI"
+	CXXFLAGS="-fPIC"
 }
 
 pre_install() {
@@ -27,13 +63,8 @@ pre_install() {
 
 do_check() {
 	echo "Testing lcalc ..."
-	. "${FILESDIR}/test" > test.log
-	case "$XBPS_TARGET_MACHINE" in
-		i686) 	OUT="${FILESDIR}/test.i686" ;;
-		*-musl) OUT="${FILESDIR}/test.musl" ;;
-		*) 	OUT="${FILESDIR}/test.out" ;;
-	esac
-	diff "$OUT" test.log && echo PASS
+	sh "${FILESDIR}"/test > test.log
+	diff "${FILESDIR}"/test.out test.log && echo PASS
 }
 
 lcalc-devel_package() {

From 3fb1c5a715fc73dc6ac9260bfdfe240b2b63387e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Wed, 7 Apr 2021 22:08:40 -0300
Subject: [PATCH 3/3] Update srcpkgs/lcalc/template
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Co-authored-by: Érico Nogueira Rolim <34201958+ericonr@users.noreply.github.com>
---
 srcpkgs/lcalc/template | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
index 19396f11643c..cf4fa3762e33 100644
--- a/srcpkgs/lcalc/template
+++ b/srcpkgs/lcalc/template
@@ -26,8 +26,7 @@ _patches="
  pari-mem.patch
  pari_include.patch
  time.h.patch
- using_namespace_std.patch
-"
+ using_namespace_std.patch"
 checksum+="
  bd39a43b24a332e1826e667f85ca2ce2ca14749d56f60069cd886c96f55e9e3c
  d8c660f68f33b6eeb4b801d4028faaaaccbfff5797efe654bb6367e0a687542d

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR REVIEW] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (21 preceding siblings ...)
  2021-04-08  1:08 ` [PR PATCH] [Updated] " tornaria
@ 2021-04-08  1:16 ` tornaria
  2021-04-08  1:20 ` [PR PATCH] [Updated] " tornaria
                   ` (10 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-08  1:16 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 316 bytes --]

New review comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/30036#discussion_r609182547

Comment:
I think both. You are right, the `.so` should probably go in the main package. For some reason the binary is compiled static so it doesn't need the `.so` to be around. 

^ permalink raw reply	[flat|nested] 35+ messages in thread

* Re: [PR PATCH] [Updated] Math package: lcalc-1.23
  2021-04-06  5:10 [PR PATCH] Math package: lcalc-1.23 tornaria
                   ` (22 preceding siblings ...)
  2021-04-08  1:16 ` [PR REVIEW] " tornaria
@ 2021-04-08  1:20 ` tornaria
  2021-04-08  1:49 ` tornaria
                   ` (9 subsequent siblings)
  33 siblings, 0 replies; 35+ messages in thread
From: tornaria @ 2021-04-08  1:20 UTC (permalink / raw)
  To: ml

[-- Attachment #1: Type: text/plain, Size: 476 bytes --]

There is an updated pull request by tornaria against master on the void-packages repository

https://github.com/tornaria/void-packages math-lcalc
https://github.com/void-linux/void-packages/pull/30036

Math package: lcalc-1.23
Michael Rubinstein's L-function calculator.

The long files are just tests. The 3 versions are almost the same except for a few minor rounding differences.

A patch file from https://github.com/void-linux/void-packages/pull/30036.patch is attached

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-math-lcalc-30036.patch --]
[-- Type: text/x-diff, Size: 261714 bytes --]

From 690db2a6b605aaf4d7419cfb326ec9c86841b3c3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Thu, 1 Feb 2018 16:32:51 -0300
Subject: [PATCH 1/3] New package: lcalc-1.23

---
 srcpkgs/lcalc-devel                           |    1 +
 srcpkgs/lcalc/files/test                      |   14 +
 srcpkgs/lcalc/files/test.i686                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.musl                 | 2102 +++++++++++++++++
 srcpkgs/lcalc/files/test.out                  | 2102 +++++++++++++++++
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 +
 .../lcalc-1.23_default_parameters_1.patch     |   24 +
 .../lcalc-1.23_default_parameters_2.patch     |   56 +
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 +
 .../lcalc-1.23_fix-return-non-void.patch      |   20 +
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 +
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 +
 srcpkgs/lcalc/patches/pari_include.patch      |   30 +
 .../lcalc/patches/using_namespace_std.patch   |   41 +
 srcpkgs/lcalc/template                        |   45 +
 15 files changed, 6692 insertions(+)
 create mode 120000 srcpkgs/lcalc-devel
 create mode 100644 srcpkgs/lcalc/files/test
 create mode 100644 srcpkgs/lcalc/files/test.i686
 create mode 100644 srcpkgs/lcalc/files/test.musl
 create mode 100644 srcpkgs/lcalc/files/test.out
 create mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 create mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 create mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 create mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 create mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch
 create mode 100644 srcpkgs/lcalc/template

diff --git a/srcpkgs/lcalc-devel b/srcpkgs/lcalc-devel
new file mode 120000
index 000000000000..ec3437a2fb19
--- /dev/null
+++ b/srcpkgs/lcalc-devel
@@ -0,0 +1 @@
+lcalc
\ No newline at end of file
diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
new file mode 100644
index 000000000000..cbac6d8b324d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test
@@ -0,0 +1,14 @@
+echo "### First 1000 zeros of zeta function"
+./lcalc -z 1000
+echo
+echo "### Analytic rank of elliptic curve 5077a1"
+./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
+echo
+echo "### run example program"
+LD_LIBRARY_PATH=. example_programs/example
+echo
+echo "### test data files: zeros of data_mass"
+./lcalc -F example_data_files/data_maass -z 20
+echo
+echo "### test data files: zeros of data_tau"
+./lcalc -F example_data_files/data_tau -z 1000
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
new file mode 100644
index 000000000000..08872e4cc25f
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.i686
@@ -0,0 +1,2102 @@
+### First 1000 zeros of zeta function
+ 14.13472514173
+ 21.02203963877
+ 25.01085758015
+ 30.42487612586
+ 32.93506158774
+ 37.58617815883
+ 40.91871901215
+ 43.32707328091
+ 48.00515088117
+ 49.77383247767
+ 52.97032147771
+ 56.44624769706
+ 59.3470440026
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+ 65.11254404808
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+ 72.06715767448
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+ 82.91038085409
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+ 101.31785100573
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+ 105.44662305233
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
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+### test data files: zeros of data_mass
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+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.musl b/srcpkgs/lcalc/files/test.musl
new file mode 100644
index 000000000000..5b1b4d8b978d
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.musl
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
+0.4285714285714
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+0
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+-0.7071067811865
+
+### test data files: zeros of data_mass
+ 2.89772467827
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/files/test.out b/srcpkgs/lcalc/files/test.out
new file mode 100644
index 000000000000..edae9c7f9381
--- /dev/null
+++ b/srcpkgs/lcalc/files/test.out
@@ -0,0 +1,2102 @@
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+
+### Analytic rank of elliptic curve 5077a1
+analytic rank equals 3
+
+### run example program
+-----------------------------------------------
+
+Name of L_function: zeta
+All coefficients are equal to 1
+
+Q = 0.564189583548
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0,0)
+
+
+number of poles (of the completed L function) = 2
+pole[1] =(1,0)    residue[1] =(1,0)
+pole[2] =(0,0)    residue[2] =(-1,0)
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L4
+number of dirichlet coefficients = 4
+coefficients are periodic
+b[1] = 1
+b[2] = 0
+b[3] = -1
+b[4] = 0
+
+Q = 1.1283791671
+OMEGA = (1,0)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+-----------------------------------------------
+
+Name of L_function: L5
+number of dirichlet coefficients = 5
+coefficients are periodic
+b[1] = (1,0)
+b[2] = (0,1)
+b[3] = (-0,-1)
+b[4] = (-1,0)
+b[5] = (0,0)
+
+Q = 1.26156626101
+OMEGA = (0.850650808352,0.525731112119)
+a = 1 (the quasi degree)
+gamma[1] =0.5    lambda[1] =(0.5,0)
+
+
+number of poles (of the completed L function) = 0
+-----------------------------------------------
+
+zeta(0.5,0) = (-1.46035450881,0)
+L4(0.5,0) = (0.6676914571896,0)
+L5(0.5,0) = (0.7637478801173,0.2169647675189)
+L4(1,0) = (0.7853981633975,0)
+L5(1,0) = (0.8648062659772,0.2041530661384)
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+0
+0.8888888888889
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+-0.7071067811865
+
+### test data files: zeros of data_mass
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+
+### test data files: zeros of data_tau
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diff --git a/srcpkgs/lcalc/patches/Lcommon.h.patch b/srcpkgs/lcalc/patches/Lcommon.h.patch
new file mode 100644
index 000000000000..c6b5c0aaa39e
--- /dev/null
+++ b/srcpkgs/lcalc/patches/Lcommon.h.patch
@@ -0,0 +1,11 @@
+--- src/include/Lcommon.h	2010-01-31 15:16:45.000000000 +0000
++++ src/include/Lcommon.h	2011-03-08 21:19:11.849443238 +0000
+@@ -25,7 +25,7 @@
+ #ifdef USE_MPFR
+ inline double lcalc_to_double(const double& x) { return x; }
+ #endif
+-//inline double lcalc_to_double(const long double& x) { return x; }
++inline double lcalc_to_double(const long double& x) { return x; }
+ inline double lcalc_to_double(const int& x) { return x; }
+ inline double lcalc_to_double(const long long& x) { return x; }
+ inline double lcalc_to_double(const short& x) { return x; }
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
new file mode 100644
index 000000000000..b94fc72d18a5
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
@@ -0,0 +1,24 @@
+diff -Naur lcalc-1.23-vanilla/include/Ldirichlet_series.h lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h
+--- lcalc-1.23-vanilla/include/Ldirichlet_series.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/Ldirichlet_series.h	2014-04-21 14:37:59.027464849 +0200
+@@ -43,7 +43,7 @@
+  //XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
+ template <class ttype>
+ Complex L_function <ttype>::
+-dirichlet_series(Complex s, long long N=-1)
++dirichlet_series(Complex s, long long N)
+ {
+     Complex z=0.;
+     long long m,n;
+diff -Naur lcalc-1.23-vanilla/include/L.h lcalc-1.23-fixed-gcc.4.9/include/L.h
+--- lcalc-1.23-vanilla/include/L.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23-fixed-gcc.4.9/include/L.h	2014-04-21 14:32:04.003467348 +0200
+@@ -491,7 +491,7 @@
+ 
+     //#include "Ldirichlet_series.h" //for computing Dirichlet series
+     Complex partial_dirichlet_series(Complex s, long long N1, long long N2);
+-    Complex dirichlet_series(Complex s, long long N);
++    Complex dirichlet_series(Complex s, long long N=-1LL);
+ 
+     //#include "Ltaylor_series.h" //for computing taylor series for Dirichlet series
+     //void compute_taylor_series(int N, int K, Complex s_0, Complex *series);
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
new file mode 100644
index 000000000000..f5fd45358d0b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
@@ -0,0 +1,56 @@
+--- lcalc-1.23/include/Lgamma.h	2012-08-08 23:21:55.000000000 +0200
++++ lcalc-1.23/include/Lgamma.h	2014-05-18 21:15:27.786889718 +0200
+@@ -77,7 +77,7 @@
+ //n=0 should just give log_GAMMA(z)... thus making log_GAMMA
+ //code obsolete. But leave log_GAMMA intact anyways.
+ template <class ttype>
+-precise(ttype) log_GAMMA (ttype z,int n=0)
++precise(ttype) log_GAMMA (ttype z,int n)
+ {
+     int M;
+     precise(ttype) log_G,r,r2,y;
+@@ -230,7 +230,7 @@
+ //value exp_w which holds exp(-w)
+ //computes G(z,w), so there's an extra w^(-z) factor.
+ template <class ttype>
+-Complex inc_GAMMA (ttype z,ttype w, const char *method="temme", ttype exp_w = 0, bool recycle=false)
++Complex inc_GAMMA (ttype z,ttype w, const char *method, ttype exp_w, bool recycle)
+ {
+ 
+     Complex G;
+@@ -334,7 +334,7 @@
+ 
+ 
+ template <class ttype>
+-ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w=0, bool recycle=false)  //computes G(z,w) via continued fraction
++ttype cfrac_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via continued fraction
+ {
+ 
+         ttype G;
+@@ -424,7 +424,7 @@
+ }
+ 
+ template <class ttype>
+-ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w = 0, bool recycle=false)  //computes G(z,w) via asymptotic series
++ttype asympt_GAMMA (ttype z,ttype w, ttype exp_w, bool recycle)  //computes G(z,w) via asymptotic series
+ {
+ 
+         if(my_verbose>3) cout << "called asympt_GAMMA("<<z<<","<<w<<")"<< endl;
+@@ -446,7 +446,7 @@
+ 
+ 
+ template <class ttype>
+-ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w = 0, bool recycle=false)  //computes g(z,w)
++ttype comp_inc_GAMMA (ttype z,ttype w,ttype exp_w, bool recycle)  //computes g(z,w)
+ {
+ 
+     ttype g;
+@@ -604,7 +604,7 @@
+ }
+ 
+ template <class ttype>
+-Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta=1, const char *method="temme")
++Complex gamma_sum(Complex s, int what_type, ttype *coeff, int N, Double g, Complex l, Double Q, Long Period, Complex delta, const char *method)
+ {
+     Complex SUM=0;
+ 
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
new file mode 100644
index 000000000000..1640dda12bc4
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
@@ -0,0 +1,53 @@
+diff --git a/include/cmdline.h b/include/cmdline.h
+index 319920a..41967e1 100644
+--- a/include/cmdline.h
++++ b/include/cmdline.h
+@@ -320,7 +320,7 @@ void cmdline_parser_free (struct gengetopt_args_info *args_info);
+ int cmdline_parser_required (struct gengetopt_args_info *args_info,
+   const char *prog_name);
+ 
+-extern char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
++extern const char *cmdline_parser_output_character_values[] ;	/**< @brief Possible values for output-character.  */
+ 
+ 
+ #ifdef __cplusplus
+diff --git a/src/cmdline.c b/src/cmdline.c
+index 6daf7da..1087693 100644
+--- a/src/cmdline.c
++++ b/src/cmdline.c
+@@ -93,7 +93,7 @@ cmdline_parser_internal (int argc, char * const *argv, struct gengetopt_args_inf
+                         struct cmdline_parser_params *params, const char *additional_error);
+ 
+ 
+-char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
++const char *cmdline_parser_output_character_values[] = {"1", "2", 0} ;	/* Possible values for output-character.  */
+ 
+ static char *
+ gengetopt_strdup (const char *s);
+@@ -410,7 +410,7 @@ cmdline_parser_release (struct gengetopt_args_info *args_info)
+  * -2 if more than one value has matched
+  */
+ static int
+-check_possible_values(const char *val, char *values[])
++check_possible_values(const char *val, const char *values[])
+ {
+   int i, found, last;
+   size_t len;
+@@ -439,7 +439,7 @@ check_possible_values(const char *val, char *values[])
+ 
+ 
+ static void
+-write_into_file(FILE *outfile, const char *opt, const char *arg, char *values[])
++write_into_file(FILE *outfile, const char *opt, const char *arg, const char *values[])
+ {
+   int found = -1;
+   if (arg) {
+@@ -681,7 +681,7 @@ static char *package_name = 0;
+ static
+ int update_arg(void *field, char **orig_field,
+                unsigned int *field_given, unsigned int *prev_given, 
+-               char *value, char *possible_values[], const char *default_value,
++               char *value, const char *possible_values[], const char *default_value,
+                cmdline_parser_arg_type arg_type,
+                int check_ambiguity, int override,
+                int no_free, int multiple_option,
diff --git a/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
new file mode 100644
index 000000000000..23850bbfbd56
--- /dev/null
+++ b/srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
@@ -0,0 +1,20 @@
+diff --git a/include/Lvalue.h b/include/Lvalue.h
+index eef9ffa..01974c3 100644
+--- a/include/Lvalue.h
++++ b/include/Lvalue.h
+@@ -486,6 +486,15 @@
+             delete [] DELTA;
+             return L_value*exp(z-.5*log(OMEGA));
+         }
++
++        else // return L(s)
++        {
++            z=1;
++            for(j=1;j<=a;j++)
++                z=z*GAMMA(gamma[j]*s+lambda[j],DELTA[j]);
++            delete [] DELTA;
++            return L_value*exp(-log(Q)*s)/z;
++        }
+     }
+ 
+ 
diff --git a/srcpkgs/lcalc/patches/pari-2.7.patch b/srcpkgs/lcalc/patches/pari-2.7.patch
new file mode 100644
index 000000000000..d565490d98d3
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-2.7.patch
@@ -0,0 +1,67 @@
+--- src/src/Lcommandline_elliptic.cc	2010-01-31 16:16:45.000000000 +0100
++++ src/src/Lcommandline_elliptic.cc	2011-05-10 17:08:10.000000000 +0200
+@@ -121,11 +121,11 @@
+ 
+ 
+     F = cgetg(6, t_VEC);
+-    F[1] = lgeti(BIGDEFAULTPREC);
+-    F[2] = lgeti(BIGDEFAULTPREC);
+-    F[3] = lgeti(BIGDEFAULTPREC);
+-    F[4] = lgeti(BIGDEFAULTPREC);
+-    F[5] = lgeti(BIGDEFAULTPREC);
++    F[1] = (long)cgeti(BIGDEFAULTPREC);
++    F[2] = (long)cgeti(BIGDEFAULTPREC);
++    F[3] = (long)cgeti(BIGDEFAULTPREC);
++    F[4] = (long)cgeti(BIGDEFAULTPREC);
++    F[5] = (long)cgeti(BIGDEFAULTPREC);
+ 
+     //gaffsg(a1,(GEN) F[1]);
+     //gaffsg(a2,(GEN) F[2]);
+@@ -133,15 +133,15 @@
+     //gaffsg(a4,(GEN) F[4]);
+     //gaffsg(a6,(GEN) F[5]);
+ 
+-    gaffect(strtoGEN(a1), (GEN) F[1]);
+-    gaffect(strtoGEN(a2), (GEN) F[2]);
+-    gaffect(strtoGEN(a3), (GEN) F[3]);
+-    gaffect(strtoGEN(a4), (GEN) F[4]);
+-    gaffect(strtoGEN(a6), (GEN) F[5]);
++    gaffect(gp_read_str(a1), (GEN) F[1]);
++    gaffect(gp_read_str(a2), (GEN) F[2]);
++    gaffect(gp_read_str(a3), (GEN) F[3]);
++    gaffect(gp_read_str(a4), (GEN) F[4]);
++    gaffect(gp_read_str(a6), (GEN) F[5]);
+ 
+-    E = initell(F,BIGDEFAULTPREC);
++    E = ellinit(F, NULL, BIGDEFAULTPREC);
+ 
+-    C=globalreduction(E);
++    C=ellglobalred(E);
+ 
+     x=gtodouble((GEN) C[1]);
+ 
+@@ -167,8 +167,8 @@
+ 
+             p=n;
+             gaffsg(p,y);
+-            coeff[p] = Double(1.*llrint(gtodouble(apell(E,y))))/sqrt(Double(1.*p));
+-            //coeff[p] = Double(1.*Long(gtodouble(apell(E,y))+.1))/sqrt(Double(1.*p));
++            coeff[p] = Double(1.*llrint(gtodouble(ellap(E,y))))/sqrt(Double(1.*p));
++            //coeff[p] = Double(1.*Long(gtodouble(ellap(E,y))+.1))/sqrt(Double(1.*p));
+ 
+             if(gtolong(gmod((GEN) E[12],(GEN) y))==0) // if p|discriminant, i.e. bad reduction
+             {
+diff -ru src/src/Lcommandline.cc b/src/Lcommandline.cc
+--- src/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ b/src/Lcommandline.cc	2014-01-06 14:02:19.463388366 +0100
+@@ -473,7 +473,9 @@
+ 
+ #ifdef INCLUDE_PARI
+         if(do_elliptic_curve){
+-             allocatemoremem((int) N_terms*16+1000000); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++             // Reallocate PARI stack
++             paristack_setsize((size_t)N_terms*16 + 1000000, 0); //XXXXXXXXX this should depend on whether we're double or long double or mpfr double
++
+              if (my_verbose>0) cout << "Will precompute " << N_terms << " elliptic L-function dirichlet coefficients..." << endl;
+              initialize_new_L(a1,a2,a3,a4,a6,N_terms); 
+         }
diff --git a/srcpkgs/lcalc/patches/pari-mem.patch b/srcpkgs/lcalc/patches/pari-mem.patch
new file mode 100644
index 000000000000..1566681a909b
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari-mem.patch
@@ -0,0 +1,24 @@
+Use a much smaller PARI stack size for starting up
+
+Actually 1MB is sufficient, so there is plenty of margin
+with the 16MB in this patch
+
+See https://trac.sagemath.org/ticket/24516
+
+diff -ru lcalc-1.23/src/Lcommandline.cc lcalc-1.23-patched//src/Lcommandline.cc
+--- lcalc-1.23/src/Lcommandline.cc	2012-08-08 23:21:56.000000000 +0200
++++ lcalc-1.23-patched//src/Lcommandline.cc	2018-01-30 11:23:06.975418539 +0100
+@@ -412,12 +412,7 @@
+ 
+             t2=.5; //t2=.5 because of the GAMMA(s+1/2)
+ 
+-            pari_init(1000000000,2);
+-            //pari_init_opts(400000000,2,INIT_DFTm); // the last option is to prevent
+-            //pari from giving its interrupt signal when its elliptic curve a_p
+-            //algorithm is called and interrupted with ctrl-c. Requires a more current
+-            //version of pari, so use pari_init above until I have a configure set up
+-            //that detects which pari, if any, is installed.
++            pari_init_opts(16000000, 2, INIT_DFTm);
+ 
+             coeff = new Double[3];
+             //compute the conductor which is copied to coeff[1]
diff --git a/srcpkgs/lcalc/patches/pari_include.patch b/srcpkgs/lcalc/patches/pari_include.patch
new file mode 100644
index 000000000000..8ad1cc1cc43a
--- /dev/null
+++ b/srcpkgs/lcalc/patches/pari_include.patch
@@ -0,0 +1,30 @@
+Notes:
+Use a standard include path for pari. It means there is no need
+to specify an include path when pari headers are in a standard location.
+
+diff --git a/include/Lcommandline.h b/include/Lcommandline.h
+index 6537e98..5e63e4e 100644
+--- a/include/Lcommandline.h
++++ b/include/Lcommandline.h
+@@ -39,7 +39,7 @@
+ 
+ #include "Lcommandline_globals.h"      //command line global variables
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
+diff --git a/include/Lcommandline_elliptic.h b/include/Lcommandline_elliptic.h
+index 17fa42c..7d80208 100644
+--- a/include/Lcommandline_elliptic.h
++++ b/include/Lcommandline_elliptic.h
+@@ -32,7 +32,7 @@
+ 
+ 
+ #ifdef INCLUDE_PARI
+-#include "pari.h"          //for pari's elliptic curve functions 
++#include "pari/pari.h"          //for pari's elliptic curve functions
+ #undef init                //pari has a '#define init pari_init' which
+                            //causes trouble with the stream.h init.
+                            //pari also causes trouble with things like abs.
diff --git a/srcpkgs/lcalc/patches/using_namespace_std.patch b/srcpkgs/lcalc/patches/using_namespace_std.patch
new file mode 100644
index 000000000000..6d733ffd7115
--- /dev/null
+++ b/srcpkgs/lcalc/patches/using_namespace_std.patch
@@ -0,0 +1,41 @@
+diff --git a/include/Lcommon.h b/include/Lcommon.h
+index 1b3be43..bf40532 100644
+--- a/include/Lcommon.h
++++ b/include/Lcommon.h
+@@ -48,7 +48,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lcommon_ld.h b/include/Lcommon_ld.h
+index 86ae4df..33c560c 100644
+--- a/include/Lcommon_ld.h
++++ b/include/Lcommon_ld.h
+@@ -53,7 +53,7 @@ const bool outputSeries=true;	  // Whether to output the coefficients or just th
+ 
+ // Loop i from m to n
+ // Useful in tidying up most for loops
+-#define loop(i,m,n) for(typeof(m) i=(m); i!=(n); i++)
++#define loop(i,m,n) for(auto i=(m); i!=(n); i++)
+ 
+ // A class for calculations involving polynomials of small degree
+ // Not efficient enough for huge polynomials
+diff --git a/include/Lglobals.h b/include/Lglobals.h
+index 60002e4..ca2606c 100644
+--- a/include/Lglobals.h
++++ b/include/Lglobals.h
+@@ -24,9 +24,9 @@
+ #ifndef Lglobals_H
+ #define Lglobals_H
+ 
++#include <valarray>
+ using namespace std;
+ 
+-#include <valarray>
+ #ifdef USE_MPFR
+     #include "Lgmpfrxx.h"
+     typedef mpfr_class Double;
diff --git a/srcpkgs/lcalc/template b/srcpkgs/lcalc/template
new file mode 100644
index 000000000000..d724b524f992
--- /dev/null
+++ b/srcpkgs/lcalc/template
@@ -0,0 +1,45 @@
+# Template file for 'lcalc'
+pkgname=lcalc
+version=1.23
+revision=1
+build_wrksrc="src"
+build_style="gnu-makefile"
+makedepends="pari-devel"
+short_desc="Michael Rubinstein's L-function calculator"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
+license="GPL-2.0-or-later"
+homepage="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/"
+distfiles="https://mirrors.mit.edu/sage/spkg/upstream/lcalc/lcalc-${version}.tar.bz2"
+checksum=83d4253ec2f38553b21190d6d0c6b71bab7ea14717f6dde5bd18f60775d3cdb0
+patch_args="-Np1"
+nocross=yes
+
+pre_build() {
+	CC="$CXX"
+	LDFLAGS+=" -lpari"
+	make_build_args+=" PARI_DEFINE=-DINCLUDE_PARI"
+}
+
+pre_install() {
+	mkdir -p ${DESTDIR}/usr/{bin,lib,include}
+	make_install_args+=" INSTALL_DIR=${DESTDIR}/usr"
+}
+
+do_check() {
+	echo "Testing lcalc ..."
+	. "${FILESDIR}/test" > test.log
+	case "$XBPS_TARGET_MACHINE" in
+		i686) 	OUT="${FILESDIR}/test.i686" ;;
+		*-musl) OUT="${FILESDIR}/test.musl" ;;
+		*) 	OUT="${FILESDIR}/test.out" ;;
+	esac
+	diff "$OUT" test.log && echo PASS
+}
+
+lcalc-devel_package() {
+	short_desc+=" - development files"
+	pkg_install() {
+		vmove "usr/lib"
+		vmove "usr/include"
+	}
+}

From 75734708f6d670705c9b12672609ad29f6f2dffa Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Wed, 7 Apr 2021 19:09:58 -0300
Subject: [PATCH 2/3] lcalc: change patches, testing, enable cross

---
 srcpkgs/lcalc/files/test                      |    6 +-
 srcpkgs/lcalc/files/test.i686                 | 2102 -----------------
 srcpkgs/lcalc/files/test.musl                 | 2102 -----------------
 srcpkgs/lcalc/files/test.out                  | 1994 +---------------
 srcpkgs/lcalc/patches/Lcommon.h.patch         |   11 -
 .../lcalc-1.23_default_parameters_1.patch     |   24 -
 .../lcalc-1.23_default_parameters_2.patch     |   56 -
 .../patches/lcalc-1.23_fix-const-char.patch   |   53 -
 .../lcalc-1.23_fix-return-non-void.patch      |   20 -
 srcpkgs/lcalc/patches/pari-2.7.patch          |   67 -
 srcpkgs/lcalc/patches/pari-mem.patch          |   24 -
 srcpkgs/lcalc/patches/pari_include.patch      |   30 -
 .../lcalc/patches/using_namespace_std.patch   |   41 -
 srcpkgs/lcalc/template                        |   57 +-
 14 files changed, 49 insertions(+), 6538 deletions(-)
 delete mode 100644 srcpkgs/lcalc/files/test.i686
 delete mode 100644 srcpkgs/lcalc/files/test.musl
 delete mode 100644 srcpkgs/lcalc/patches/Lcommon.h.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_1.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_default_parameters_2.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-const-char.patch
 delete mode 100644 srcpkgs/lcalc/patches/lcalc-1.23_fix-return-non-void.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari-2.7.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari-mem.patch
 delete mode 100644 srcpkgs/lcalc/patches/pari_include.patch
 delete mode 100644 srcpkgs/lcalc/patches/using_namespace_std.patch

diff --git a/srcpkgs/lcalc/files/test b/srcpkgs/lcalc/files/test
index cbac6d8b324d..d7f08e771829 100644
--- a/srcpkgs/lcalc/files/test
+++ b/srcpkgs/lcalc/files/test
@@ -1,5 +1,5 @@
 echo "### First 1000 zeros of zeta function"
-./lcalc -z 1000
+./lcalc -z 10
 echo
 echo "### Analytic rank of elliptic curve 5077a1"
 ./lcalc -e --a1=0 --a2=0 --a3=1 --a4=-7 --a6=6 -r
@@ -8,7 +8,7 @@ echo "### run example program"
 LD_LIBRARY_PATH=. example_programs/example
 echo
 echo "### test data files: zeros of data_mass"
-./lcalc -F example_data_files/data_maass -z 20
+./lcalc -F example_data_files/data_maass -z 10
 echo
 echo "### test data files: zeros of data_tau"
-./lcalc -F example_data_files/data_tau -z 1000
+./lcalc -F example_data_files/data_tau -z 10
diff --git a/srcpkgs/lcalc/files/test.i686 b/srcpkgs/lcalc/files/test.i686
deleted file mode 100644
index 08872e4cc25f..000000000000
--- a/srcpkgs/lcalc/files/test.i686
+++ /dev/null
@@ -1,2102 +0,0 @@
-### First 1000 zeros of zeta function
- 14.13472514173
- 21.02203963877
- 25.01085758015
- 30.42487612586
- 32.93506158774
- 37.58617815883
- 40.91871901215
- 43.32707328091
- 48.00515088117
- 49.77383247767
- 52.97032147771
- 56.44624769706
- 59.3470440026
- 60.83177852461
- 65.11254404808
- 67.07981052949
- 69.54640171117
- 72.06715767448
- 75.70469069908
- 77.14484006887
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- 184.8744678484
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- 187.2289225835
- 189.416158656
- 192.0266563607
- 193.0797266038
- 195.2653966795
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-
-### Analytic rank of elliptic curve 5077a1
-analytic rank equals 3
-
-### run example program
------------------------------------------------
-
-Name of L_function: zeta
-All coefficients are equal to 1
-
-Q = 0.564189583548
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0,0)
-
-
-number of poles (of the completed L function) = 2
-pole[1] =(1,0)    residue[1] =(1,0)
-pole[2] =(0,0)    residue[2] =(-1,0)
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L4
-number of dirichlet coefficients = 4
-coefficients are periodic
-b[1] = 1
-b[2] = 0
-b[3] = -1
-b[4] = 0
-
-Q = 1.1283791671
-OMEGA = (1,0)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
------------------------------------------------
-
-Name of L_function: L5
-number of dirichlet coefficients = 5
-coefficients are periodic
-b[1] = (1,0)
-b[2] = (0,1)
-b[3] = (-0,-1)
-b[4] = (-1,0)
-b[5] = (0,0)
-
-Q = 1.26156626101
-OMEGA = (0.850650808352,0.525731112119)
-a = 1 (the quasi degree)
-gamma[1] =0.5    lambda[1] =(0.5,0)
-
-
-number of poles (of the completed L function) = 0
------------------------------------------------
-
-zeta(0.5,0) = (-1.46035450881,0)
-L4(0.5,0) = (0.6676914571896,0)
-L5(0.5,0) = (0.7637478801173,0.2169647675189)
-L4(1,0) = (0.7853981633975,0)
-L5(1,0) = (0.8648062659772,0.2041530661384)
-0.4285714285714
-1.5
-0.1666666666667
-0.6666666666667
-0.5714285714286
-0
-0.5714285714286
-0.5714285714286
-0
-0.8888888888889
-6.123031769112e-17
--0.7071067811865
-
-### test data files: zeros of data_mass
- 2.89772467827
- 5.59124531532
- 21.09037750873
- 23.15751048459
- 25.43930038984
- 29.18920671354
- 31.06173948455
- 32.45271823746
- 34.02727968404
- 36.93123719687
- 38.98709821794
- 40.46554901427
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- 45.22036201604
- 47.66072427933
- 48.81796648431
- 49.79846517638
- 51.37514501231
- 52.55988761653
-
-### test data files: zeros of data_tau
- 9.222379399921
- 13.90754986139
- 17.44277697823
- 19.65651314195
- 22.33610363721
- 25.27463654811
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-