Re: update few python3 packages

[tornaria <tornaria@users.noreply.github.com>]

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New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/35376#issuecomment-1347481793

Comment:
Something bad happened here:
```
$ sage
┌────────────────────────────────────────────────────────────────────┐
│ SageMath version 9.7, Release Date: 2022-09-19                     │
│ Using Python 3.11.1. Type "help()" for help.                       │
└────────────────────────────────────────────────────────────────────┘
/usr/lib/python3.11/site-packages/jupyter_client/__init__.py:23: UserWarning: Could not import submodules
  warnings.warn("Could not import submodules")
Error in sys.excepthook:
Traceback (most recent call last):
  File "/usr/lib/python3.11/pathlib.py", line 1250, in is_dir
    return S_ISDIR(self.stat().st_mode)
                   ^^^^^^^^^
AttributeError: 'str' object has no attribute 'stat'

Original exception was:
Traceback (most recent call last):
  File "/usr/lib/sagemath/9.7/bin/sage-ipython", line 15, in <module>
    app.initialize()
  File "/usr/lib/python3.11/site-packages/traitlets/config/application.py", line 110, in inner
    return method(app, *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/IPython/terminal/ipapp.py", line 279, in initialize
    self.init_shell()
  File "/usr/lib/python3.11/site-packages/sage/repl/interpreter.py", line 765, in init_shell
    self.shell = self.shell_class.instance(
                 ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/traitlets/config/configurable.py", line 551, in instance
    inst = cls(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/IPython/terminal/interactiveshell.py", line 651, in __init__
    super(TerminalInteractiveShell, self).__init__(*args, **kwargs)
  File "/usr/lib/python3.11/site-packages/IPython/core/interactiveshell.py", line 610, in __init__
    self.init_display_formatter()
  File "/usr/lib/python3.11/site-packages/sage/repl/interpreter.py", line 288, in init_display_formatter
    backend.get_display_manager().switch_backend(backend, shell=self)
  File "/usr/lib/python3.11/site-packages/sage/repl/rich_output/display_manager.py", line 340, in switch_backend
    self._backend.install(**kwds)
  File "/usr/lib/python3.11/site-packages/sage/repl/rich_output/backend_ipython.py", line 60, in install
    from sage.repl.display.formatter import SageDisplayFormatter
  File "/usr/lib/python3.11/site-packages/sage/repl/display/formatter.py", line 69, in <module>
    from ipywidgets import Widget
  File "/usr/lib/python3.11/site-packages/ipywidgets/__init__.py", line 25, in <module>
    from .widgets import *
  File "/usr/lib/python3.11/site-packages/ipywidgets/widgets/__init__.py", line 4, in <module>
    from .widget import Widget, CallbackDispatcher, register, widget_serialization
  File "/usr/lib/python3.11/site-packages/ipywidgets/widgets/widget.py", line 18, in <module>
    from ipykernel.comm import Comm
  File "/usr/lib/python3.11/site-packages/ipykernel/__init__.py", line 5, in <module>
    from .connect import *  # noqa
    ^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.11/site-packages/ipykernel/connect.py", line 12, in <module>
    from jupyter_client import write_connection_file
ImportError: cannot import name 'write_connection_file' from 'jupyter_client' (/usr/lib/python3.11/site-packages/jupyter_client/__init__.py)
```
@dkwo @ahesford: sage was working 5 minutes ago before I updated my system... Something in the list below broke it:
```
Name                      Action    Version           New version            Download size
libplacebo                update    4.192.1_1         4.208.0_1              291KB 
mpv                       update    0.35.0_1          0.35.0_2               1668KB 
python3-defusedxml        update    0.6.0_6           0.7.1_1                21KB 
python3-comm              install   -                 0.1.1_1                6439B 
python3-ipython_ipykernel update    5.5.4_3           6.19.2_1               105KB 
python3-jupyter_client    update    6.1.12_3          7.4.5_1                98KB 
python3-jupyter_console   update    6.4.0_3           6.4.4_1                21KB 
python3-jupyter_core      update    4.7.1_3           5.0.0_1                50KB 
python3-nbclient          update    0.5.10_2          0.7.0_1                60KB 
python3-soupsieve         update    1.9.5_9           2.3.2_1                34KB 
python3-terminado         update    0.9.4_3           0.17.0_1               15KB 
python3-tornado           update    6.1_4             6.2_1                  317KB 
python3-traitlets         update    5.0.5_3           5.5.0_1                91KB 
```