[PR PATCH] pari: update to 2.15.2.

[PR PATCH] pari: update to 2.15.2.

[tornaria]

[-- Attachment #1: Type: text/plain, Size: 1455 bytes --]

There is a new pull request by tornaria against master on the void-packages repository

https://github.com/tornaria/void-packages pari
https://github.com/void-linux/void-packages/pull/42016

pari: update to 2.15.2.
Also:
 - use -flto=auto for multithreaded link
 - change build so we don't need to patch makefile
 - ship pdf documentation in addtion to dvi
 - use SOURCE_DATE_EPOCH for dvi files
 - backport fix for pari bug 2441

<!-- Uncomment relevant sections and delete options which are not applicable -->

#### Testing the changes
- I tested the changes in this PR: **YES**
<!--
#### New package
- This new package conforms to the [package requirements](https://github.com/void-linux/void-packages/blob/master/CONTRIBUTING.md#package-requirements): **YES**|**NO**
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<!-- Note: If the build is likely to take more than 2 hours, please add ci skip tag as described in
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and test at least one native build and, if supported, at least one cross build.
Ignore this section if this PR is not skipping CI.
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<!--
#### Local build testing
- I built this PR locally for my native architecture, (ARCH-LIBC)
- I built this PR locally for these architectures (if supported. mark crossbuilds):
  - aarch64-musl
  - armv7l
  - armv6l-musl
-->


A patch file from https://github.com/void-linux/void-packages/pull/42016.patch is attached

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-pari-42016.patch --]
[-- Type: text/x-diff, Size: 7187 bytes --]

From b62fe9ac88f1440bdb1d630a73ae9c770a4ba789 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Thu, 29 Dec 2022 17:31:30 -0300
Subject: [PATCH] pari: update to 2.15.2.

Also:
 - use -flto=auto for multithreaded link
 - change build so we don't need to patch makefile
 - ship pdf documentation in addtion to dvi
 - use SOURCE_DATE_EPOCH for dvi files
 - backport fix for pari bug 2441
---
 srcpkgs/pari/patches/bug-2441.patch | 17 ++++++++++
 srcpkgs/pari/patches/float32.patch  | 48 -----------------------------
 srcpkgs/pari/patches/makefile.patch | 36 ----------------------
 srcpkgs/pari/template               | 20 ++++++------
 4 files changed, 27 insertions(+), 94 deletions(-)
 create mode 100644 srcpkgs/pari/patches/bug-2441.patch
 delete mode 100644 srcpkgs/pari/patches/float32.patch
 delete mode 100644 srcpkgs/pari/patches/makefile.patch

diff --git a/srcpkgs/pari/patches/bug-2441.patch b/srcpkgs/pari/patches/bug-2441.patch
new file mode 100644
index 000000000000..aaaeef394a83
--- /dev/null
+++ b/srcpkgs/pari/patches/bug-2441.patch
@@ -0,0 +1,17 @@
+Source: https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?att=1;bug=2441;filename=patch;msg=25
+See: https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=2441
+
+diff --git a/src/basemath/ellsea.c b/src/basemath/ellsea.c
+index a6871fa6a7..05f148eadd 100644
+--- a/src/basemath/ellsea.c
++++ b/src/basemath/ellsea.c
+@@ -852,7 +852,8 @@ find_isogenous_from_Atkin(GEN a4, GEN a6, ulong ell, struct meqn *MEQN, GEN g, G
+       GEN a4t, a6t, h;
+       a4a6t(&a4t, &a6t, ell, E4t, E6t, T, p);
+       h = find_kernel(a4, a6, ell, a4t, a6t, pp1, T, p, pp, e);
+-      if (h) return gerepilecopy(ltop, mkvec3(a4t, a6t, h));
++      if (h && signe(Fq_elldivpolmod(a4, a6, ell, h, T, pp))==0)
++        return gerepilecopy(ltop, mkvec3(a4t, a6t, h));
+     }
+   }
+   pari_err_BUG("find_isogenous_from_Atkin, kernel not found");
diff --git a/srcpkgs/pari/patches/float32.patch b/srcpkgs/pari/patches/float32.patch
deleted file mode 100644
index 311dd6bf5a07..000000000000
--- a/srcpkgs/pari/patches/float32.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-Author: Gonzalo Tornaría <tornaria@cmat.edu.uy>
-Date:   Fri Oct 14 17:00:46 2022 -0300
-
-    Revert "x86 (32bit): force -mpc64 on compilers that supports it."
-    
-    This reverts commit ca61b6391cf95ac8af15669236e2ec5839d2ad91.
-
-
-This causes problems with floating point precision on i686:
-```
-$ cat exp40.c
-#include <math.h>
-#include <stdio.h>
-int main() {
-	volatile int a=40; /* do not optimize away the call to exp(a) */
-	printf("%f\n", exp(a));
-}
-$ cc -Wall exp40.c -lm && ./a.out
-235385266837020000.000000
-$ cc -Wall exp40.c -lm -mpc64 && ./a.out
-235385266837020448.000000
-```
-
-Note that when pari is built using -mpc64, just *linking* with -lpari
-causes the problem!!!
-```
-$ cc -Wall exp40.c -lm -lpari && ./a.out
-235385266837020448.000000
-```
-
-diff --git a/config/get_cc b/config/get_cc
-index 3cfaa88bb7..2d61d3871f 100644
---- a/config/get_cc
-+++ b/config/get_cc
-@@ -110,13 +110,6 @@ if test -n "$__gnuc__"; then
-   # Specific optimisations for some architectures
-   case "$arch" in
-     sparcv8*) cflags=-mv8;;
--    i?86)
--      cmd="$CC $CFLAGS $extraflag -mpc64 -fno-strict-aliasing -o $exe gnu.c"
--      . log_cmd
--      if test -s $exe; then
--        cflags="-mpc64"
--      fi
--      . cleanup_exe;;
-   esac
-   # problems on some architectures
-   case "$osname" in
diff --git a/srcpkgs/pari/patches/makefile.patch b/srcpkgs/pari/patches/makefile.patch
deleted file mode 100644
index ec1db15a78c4..000000000000
--- a/srcpkgs/pari/patches/makefile.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-Add targets to main makefile:
- - gp-dyn
- - gp-sta
- - lib-dyn
- - lib-sta
- - install-lib-dyn
- - install-bin-dyn
-
-Also: define a .NOTPARALLEL target so that top targets are not run in parallel.
-
-Otherwise, running several targets with -j is broken.
-
-Examples:
-
-1. "make -j8 gp lib-sta lib-dyn" fails once in a while
-
-2. "make -j8 doc docpdf" fails every time
-
-With .NOTPARALLEL, both seem to work reliably.
-
-Reference:
-https://www.gnu.org/software/make/manual/html_node/Special-Targets.html#Special-Targets
-
---- pari-2.13.2.orig/config/TOP_Make.SH	2020-10-26 09:43:04.000000000 -0300
-+++ pari-2.13.2/config/TOP_Make.SH	2021-08-14 15:28:04.052670019 -0300
-@@ -42,7 +42,9 @@
- 	@\$(MAKE) gp
- 	@-cd doc && \$(MAKE) doc
-+
-+.NOTPARALLEL:
- 
--gp bench test-kernel test-all install cleanall cleanobj cleantest nsis link-data install-bin install-doc install-docpdf install-nodata install-data install-lib-sta install-bin-sta dobench dyntest-all statest-all tune $top_test_extra $top_dotest_extra::
-+gp gp-dyn gp-sta lib-dyn lib-sta bench test-kernel test-all install cleanall cleanobj cleantest nsis link-data install-bin install-doc install-docpdf install-nodata install-data install-lib-dyn install-lib-sta install-bin-dyn install-bin-sta dobench dyntest-all statest-all tune $top_test_extra $top_dotest_extra::
- 	@dir=\`config/objdir\`; echo "Making \$@ in \$\$dir";\\
- 	 if test ! -d \$\$dir; then echo "Please run Configure first!"; exit 1; fi;\\
- 	cd \$\$dir && \$(MAKE) \$@
diff --git a/srcpkgs/pari/template b/srcpkgs/pari/template
index fac7a86e3cf9..d07a939156cb 100644
--- a/srcpkgs/pari/template
+++ b/srcpkgs/pari/template
@@ -1,14 +1,14 @@
 # Template file for 'pari'
 pkgname=pari
-version=2.15.1
+version=2.15.2
 revision=1
 build_style=configure
 build_helper=qemu
 configure_script=./Configure
-configure_args="--prefix=/usr $(vopt_if pthreads --mt=pthread) -s"
-make_build_target="gp lib-sta lib-dyn doc"
+configure_args="--prefix=/usr $(vopt_if pthreads --mt=pthread)"
+make_build_target="gp doc docpdf"
 make_check_target=statest-all
-make_install_target="install install-lib-sta install-lib-dyn"
+make_install_target="install install-bin-sta install-lib-sta install-docpdf"
 hostmakedepends="perl texlive"
 makedepends="gmp-devel readline-devel $(vopt_if x11 libX11-devel)"
 checkdepends="pari-elldata-small pari-galdata pari-galpol-small
@@ -19,19 +19,19 @@ license="GPL-2.0-or-later"
 homepage="https://pari.math.u-bordeaux.fr"
 changelog="https://pari.math.u-bordeaux.fr/cgi-bin/gitweb.cgi?p=pari.git;a=blob_plain;f=CHANGES;hb=refs/heads/pari-${version%.*}"
 distfiles="https://pari.math.u-bordeaux.fr/pub/pari/unix/pari-${version}.tar.gz"
-checksum=45419db77c6685bee67e42e0ecb78e19ef562be7aafc637c8a41970f2e909e3d
+checksum=b04628111ee22876519a4b1cdafb32febaa34eafa24f9e81f58f8d057fbee0dd
 
 build_options="x11 pthreads"
 build_options_default="x11 pthreads"
 desc_option_pthreads="Enable support for pthreads"
 
 # reduce speed losses due to pthreads
-CFLAGS="-flto -fno-semantic-interposition"
+CFLAGS="-flto=auto -fno-semantic-interposition"
 
-case $XBPS_TARGET_MACHINE in
-	# avoid numerical noise caused by extended-precision of registers
-	i686*) CFLAGS+=" -ffloat-store" ;;
-esac
+# force `etex` to use SOURCE_DATE_EPOCH when creating dvi files
+# See: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897627
+export FORCE_SOURCE_DATE=1
+make_build_args="TEX=etex"
 
 post_patch() {
 	# sse2 is not available on all i686

Re: pari: update to 2.15.2.

[tornaria]

[-- Attachment #1: Type: text/plain, Size: 222 bytes --]

New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/42016#issuecomment-1414340900

Comment:
- armv6l-musl: trasient resolver failure, I did build it locally without issue.

Re: [PR PATCH] [Updated] pari: update to 2.15.2.

[tornaria]

[-- Attachment #1: Type: text/plain, Size: 1460 bytes --]

There is an updated pull request by tornaria against master on the void-packages repository

https://github.com/tornaria/void-packages pari
https://github.com/void-linux/void-packages/pull/42016

pari: update to 2.15.2.
Also:
 - use -flto=auto for multithreaded link
 - change build so we don't need to patch makefile
 - ship pdf documentation in addtion to dvi
 - use SOURCE_DATE_EPOCH for dvi files
 - backport fix for pari bug 2441

<!-- Uncomment relevant sections and delete options which are not applicable -->

#### Testing the changes
- I tested the changes in this PR: **YES**
<!--
#### New package
- This new package conforms to the [package requirements](https://github.com/void-linux/void-packages/blob/master/CONTRIBUTING.md#package-requirements): **YES**|**NO**
-->

<!-- Note: If the build is likely to take more than 2 hours, please add ci skip tag as described in
https://github.com/void-linux/void-packages/blob/master/CONTRIBUTING.md#continuous-integration
and test at least one native build and, if supported, at least one cross build.
Ignore this section if this PR is not skipping CI.
-->
<!--
#### Local build testing
- I built this PR locally for my native architecture, (ARCH-LIBC)
- I built this PR locally for these architectures (if supported. mark crossbuilds):
  - aarch64-musl
  - armv7l
  - armv6l-musl
-->


A patch file from https://github.com/void-linux/void-packages/pull/42016.patch is attached

[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-pari-42016.patch --]
[-- Type: text/x-diff, Size: 7187 bytes --]

From 378932f5ed18410b230e629f91e5a6351f7660ce Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Thu, 29 Dec 2022 17:31:30 -0300
Subject: [PATCH] pari: update to 2.15.2.

Also:
 - use -flto=auto for multithreaded link
 - change build so we don't need to patch makefile
 - ship pdf documentation in addtion to dvi
 - use SOURCE_DATE_EPOCH for dvi files
 - backport fix for pari bug 2441
---
 srcpkgs/pari/patches/bug-2441.patch | 17 ++++++++++
 srcpkgs/pari/patches/float32.patch  | 48 -----------------------------
 srcpkgs/pari/patches/makefile.patch | 36 ----------------------
 srcpkgs/pari/template               | 20 ++++++------
 4 files changed, 27 insertions(+), 94 deletions(-)
 create mode 100644 srcpkgs/pari/patches/bug-2441.patch
 delete mode 100644 srcpkgs/pari/patches/float32.patch
 delete mode 100644 srcpkgs/pari/patches/makefile.patch

diff --git a/srcpkgs/pari/patches/bug-2441.patch b/srcpkgs/pari/patches/bug-2441.patch
new file mode 100644
index 000000000000..aaaeef394a83
--- /dev/null
+++ b/srcpkgs/pari/patches/bug-2441.patch
@@ -0,0 +1,17 @@
+Source: https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?att=1;bug=2441;filename=patch;msg=25
+See: https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=2441
+
+diff --git a/src/basemath/ellsea.c b/src/basemath/ellsea.c
+index a6871fa6a7..05f148eadd 100644
+--- a/src/basemath/ellsea.c
++++ b/src/basemath/ellsea.c
+@@ -852,7 +852,8 @@ find_isogenous_from_Atkin(GEN a4, GEN a6, ulong ell, struct meqn *MEQN, GEN g, G
+       GEN a4t, a6t, h;
+       a4a6t(&a4t, &a6t, ell, E4t, E6t, T, p);
+       h = find_kernel(a4, a6, ell, a4t, a6t, pp1, T, p, pp, e);
+-      if (h) return gerepilecopy(ltop, mkvec3(a4t, a6t, h));
++      if (h && signe(Fq_elldivpolmod(a4, a6, ell, h, T, pp))==0)
++        return gerepilecopy(ltop, mkvec3(a4t, a6t, h));
+     }
+   }
+   pari_err_BUG("find_isogenous_from_Atkin, kernel not found");
diff --git a/srcpkgs/pari/patches/float32.patch b/srcpkgs/pari/patches/float32.patch
deleted file mode 100644
index 311dd6bf5a07..000000000000
--- a/srcpkgs/pari/patches/float32.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-Author: Gonzalo Tornaría <tornaria@cmat.edu.uy>
-Date:   Fri Oct 14 17:00:46 2022 -0300
-
-    Revert "x86 (32bit): force -mpc64 on compilers that supports it."
-    
-    This reverts commit ca61b6391cf95ac8af15669236e2ec5839d2ad91.
-
-
-This causes problems with floating point precision on i686:
-```
-$ cat exp40.c
-#include <math.h>
-#include <stdio.h>
-int main() {
-	volatile int a=40; /* do not optimize away the call to exp(a) */
-	printf("%f\n", exp(a));
-}
-$ cc -Wall exp40.c -lm && ./a.out
-235385266837020000.000000
-$ cc -Wall exp40.c -lm -mpc64 && ./a.out
-235385266837020448.000000
-```
-
-Note that when pari is built using -mpc64, just *linking* with -lpari
-causes the problem!!!
-```
-$ cc -Wall exp40.c -lm -lpari && ./a.out
-235385266837020448.000000
-```
-
-diff --git a/config/get_cc b/config/get_cc
-index 3cfaa88bb7..2d61d3871f 100644
---- a/config/get_cc
-+++ b/config/get_cc
-@@ -110,13 +110,6 @@ if test -n "$__gnuc__"; then
-   # Specific optimisations for some architectures
-   case "$arch" in
-     sparcv8*) cflags=-mv8;;
--    i?86)
--      cmd="$CC $CFLAGS $extraflag -mpc64 -fno-strict-aliasing -o $exe gnu.c"
--      . log_cmd
--      if test -s $exe; then
--        cflags="-mpc64"
--      fi
--      . cleanup_exe;;
-   esac
-   # problems on some architectures
-   case "$osname" in
diff --git a/srcpkgs/pari/patches/makefile.patch b/srcpkgs/pari/patches/makefile.patch
deleted file mode 100644
index ec1db15a78c4..000000000000
--- a/srcpkgs/pari/patches/makefile.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-Add targets to main makefile:
- - gp-dyn
- - gp-sta
- - lib-dyn
- - lib-sta
- - install-lib-dyn
- - install-bin-dyn
-
-Also: define a .NOTPARALLEL target so that top targets are not run in parallel.
-
-Otherwise, running several targets with -j is broken.
-
-Examples:
-
-1. "make -j8 gp lib-sta lib-dyn" fails once in a while
-
-2. "make -j8 doc docpdf" fails every time
-
-With .NOTPARALLEL, both seem to work reliably.
-
-Reference:
-https://www.gnu.org/software/make/manual/html_node/Special-Targets.html#Special-Targets
-
---- pari-2.13.2.orig/config/TOP_Make.SH	2020-10-26 09:43:04.000000000 -0300
-+++ pari-2.13.2/config/TOP_Make.SH	2021-08-14 15:28:04.052670019 -0300
-@@ -42,7 +42,9 @@
- 	@\$(MAKE) gp
- 	@-cd doc && \$(MAKE) doc
-+
-+.NOTPARALLEL:
- 
--gp bench test-kernel test-all install cleanall cleanobj cleantest nsis link-data install-bin install-doc install-docpdf install-nodata install-data install-lib-sta install-bin-sta dobench dyntest-all statest-all tune $top_test_extra $top_dotest_extra::
-+gp gp-dyn gp-sta lib-dyn lib-sta bench test-kernel test-all install cleanall cleanobj cleantest nsis link-data install-bin install-doc install-docpdf install-nodata install-data install-lib-dyn install-lib-sta install-bin-dyn install-bin-sta dobench dyntest-all statest-all tune $top_test_extra $top_dotest_extra::
- 	@dir=\`config/objdir\`; echo "Making \$@ in \$\$dir";\\
- 	 if test ! -d \$\$dir; then echo "Please run Configure first!"; exit 1; fi;\\
- 	cd \$\$dir && \$(MAKE) \$@
diff --git a/srcpkgs/pari/template b/srcpkgs/pari/template
index fac7a86e3cf9..d07a939156cb 100644
--- a/srcpkgs/pari/template
+++ b/srcpkgs/pari/template
@@ -1,14 +1,14 @@
 # Template file for 'pari'
 pkgname=pari
-version=2.15.1
+version=2.15.2
 revision=1
 build_style=configure
 build_helper=qemu
 configure_script=./Configure
-configure_args="--prefix=/usr $(vopt_if pthreads --mt=pthread) -s"
-make_build_target="gp lib-sta lib-dyn doc"
+configure_args="--prefix=/usr $(vopt_if pthreads --mt=pthread)"
+make_build_target="gp doc docpdf"
 make_check_target=statest-all
-make_install_target="install install-lib-sta install-lib-dyn"
+make_install_target="install install-bin-sta install-lib-sta install-docpdf"
 hostmakedepends="perl texlive"
 makedepends="gmp-devel readline-devel $(vopt_if x11 libX11-devel)"
 checkdepends="pari-elldata-small pari-galdata pari-galpol-small
@@ -19,19 +19,19 @@ license="GPL-2.0-or-later"
 homepage="https://pari.math.u-bordeaux.fr"
 changelog="https://pari.math.u-bordeaux.fr/cgi-bin/gitweb.cgi?p=pari.git;a=blob_plain;f=CHANGES;hb=refs/heads/pari-${version%.*}"
 distfiles="https://pari.math.u-bordeaux.fr/pub/pari/unix/pari-${version}.tar.gz"
-checksum=45419db77c6685bee67e42e0ecb78e19ef562be7aafc637c8a41970f2e909e3d
+checksum=b04628111ee22876519a4b1cdafb32febaa34eafa24f9e81f58f8d057fbee0dd
 
 build_options="x11 pthreads"
 build_options_default="x11 pthreads"
 desc_option_pthreads="Enable support for pthreads"
 
 # reduce speed losses due to pthreads
-CFLAGS="-flto -fno-semantic-interposition"
+CFLAGS="-flto=auto -fno-semantic-interposition"
 
-case $XBPS_TARGET_MACHINE in
-	# avoid numerical noise caused by extended-precision of registers
-	i686*) CFLAGS+=" -ffloat-store" ;;
-esac
+# force `etex` to use SOURCE_DATE_EPOCH when creating dvi files
+# See: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=897627
+export FORCE_SOURCE_DATE=1
+make_build_args="TEX=etex"
 
 post_patch() {
 	# sse2 is not available on all i686

Re: pari: update to 2.15.2.

[tornaria]

[-- Attachment #1: Type: text/plain, Size: 181 bytes --]

New comment by tornaria on void-packages repository

https://github.com/void-linux/void-packages/pull/42016#issuecomment-1417923872

Comment:
Rebased without changes to restart CI.

Re: [PR PATCH] [Merged]: pari: update to 2.15.2.

[leahneukirchen]

[-- Attachment #1: Type: text/plain, Size: 1305 bytes --]

There's a merged pull request on the void-packages repository

pari: update to 2.15.2.
https://github.com/void-linux/void-packages/pull/42016

Description:
Also:
 - use -flto=auto for multithreaded link
 - change build so we don't need to patch makefile
 - ship pdf documentation in addtion to dvi
 - use SOURCE_DATE_EPOCH for dvi files
 - backport fix for pari bug 2441

<!-- Uncomment relevant sections and delete options which are not applicable -->

#### Testing the changes
- I tested the changes in this PR: **YES**
<!--
#### New package
- This new package conforms to the [package requirements](https://github.com/void-linux/void-packages/blob/master/CONTRIBUTING.md#package-requirements): **YES**|**NO**
-->

<!-- Note: If the build is likely to take more than 2 hours, please add ci skip tag as described in
https://github.com/void-linux/void-packages/blob/master/CONTRIBUTING.md#continuous-integration
and test at least one native build and, if supported, at least one cross build.
Ignore this section if this PR is not skipping CI.
-->
<!--
#### Local build testing
- I built this PR locally for my native architecture, (ARCH-LIBC)
- I built this PR locally for these architectures (if supported. mark crossbuilds):
  - aarch64-musl
  - armv7l
  - armv6l-musl
-->