From: tornaria <tornaria@users.noreply.github.com>
To: ml@inbox.vuxu.org
Subject: Re: [PR PATCH] [Updated] [RFC] sagemath: update to 10.0.rc0.
Date: Sat, 29 Apr 2023 04:20:07 +0200 [thread overview]
Message-ID: <20230429022007.koAC11MZMwR_WZpFaYu3DQewiY5eb_FyUFISZr4Nkdg@z> (raw)
In-Reply-To: <gh-mailinglist-notifications-41a7ca26-5023-4802-975b-f1789d68868e-void-packages-43659@inbox.vuxu.org>
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There is an updated pull request by tornaria against master on the void-packages repository
https://github.com/tornaria/void-packages sagemath-next
https://github.com/void-linux/void-packages/pull/43659
[RFC] sagemath: update to 10.0.rc0.
<!-- Uncomment relevant sections and delete options which are not applicable -->
This builds on top of #43225 for convenience.
#### Testing the changes
- I tested the changes in this PR: **briefly**
I've been following beta releases and now rc0 includes all of our patches :muscle:
All doctests pass with the version of packages in void except for `python-Babel` which must be updated (as in #43497) and is included here as part of #43225.
I've switched my system sagemath to this version as everything seems to be working ok. The testsuite is 10-15% faster.
@dkwo: enjoy.
<!--
#### New package
- This new package conforms to the [package requirements](https://github.com/void-linux/void-packages/blob/master/CONTRIBUTING.md#package-requirements): **YES**|**NO**
-->
<!-- Note: If the build is likely to take more than 2 hours, please add ci skip tag as described in
https://github.com/void-linux/void-packages/blob/master/CONTRIBUTING.md#continuous-integration
and test at least one native build and, if supported, at least one cross build.
Ignore this section if this PR is not skipping CI.
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#### Local build testing
- I built this PR locally for my native architecture, (ARCH-LIBC)
- I built this PR locally for these architectures (if supported. mark crossbuilds):
- aarch64-musl
- armv7l
- armv6l-musl
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A patch file from https://github.com/void-linux/void-packages/pull/43659.patch is attached
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[-- Attachment #2: github-pr-sagemath-next-43659.patch --]
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From bcd09894152c6db0b95460127cedd256cb88de36 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Mon, 27 Mar 2023 00:31:35 -0300
Subject: [PATCH 1/4] singular: update to 4.3.2.
---
common/shlibs | 10 +++++-----
srcpkgs/singular/template | 4 ++--
2 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/common/shlibs b/common/shlibs
index e282bbd1f588..08dac21a5b3e 100644
--- a/common/shlibs
+++ b/common/shlibs
@@ -4099,11 +4099,11 @@ libumfpack.so.6 SuiteSparse-6.0.1_1
libecl.so.21.2 ecl-21.2.1_1
libecm.so.1 ecm-7.0.4_3
libcliquer.so.1 cliquer-1.22_1
-libSingular-4.3.1.so singular-4.3.1p2_1
-libfactory-4.3.1.so singular-4.3.1p2_1
-libpolys-4.3.1.so singular-4.3.1p2_1
-libomalloc-0.9.6.so singular-4.3.1p2_1
-libsingular_resources-4.3.1.so singular-4.3.1p2_1
+libomalloc-0.9.6.so singular-4.2.1_1
+libSingular-4.3.2.so singular-4.3.2_1
+libfactory-4.3.2.so singular-4.3.2_1
+libpolys-4.3.2.so singular-4.3.2_1
+libsingular_resources-4.3.2.so singular-4.3.2_1
libbrial.so.3 brial-1.2.10_1
libbrial_groebner.so.3 brial-1.2.10_1
libm4ri-0.0.20200125.so m4ri-20200125_1
diff --git a/srcpkgs/singular/template b/srcpkgs/singular/template
index c73a020dcf15..0481f6cb1e11 100644
--- a/srcpkgs/singular/template
+++ b/srcpkgs/singular/template
@@ -1,6 +1,6 @@
# Template file for 'singular'
pkgname=singular
-version=4.3.1p3
+version=4.3.2
revision=1
_majver=${version%p*}
build_style=gnu-configure
@@ -20,7 +20,7 @@ maintainer="dkwo <npiazza@disroot.org>"
license="GPL-2.0-or-later"
homepage="https://www.singular.uni-kl.de"
distfiles="https://www.singular.uni-kl.de/ftp/pub/Math/Singular/SOURCES/${_majver//./-}/singular-${version}.tar.gz"
-checksum=66cfaeee7ab909272fd81050a09cae3ec115652a01adde014a5128a54b97397a
+checksum=3fd565d1bd4265fa8ba7cc189137a36d9daf9939b5bb411466c2028d9191f6db
if [ -z "$CROSS_BUILD" ]; then
makedepends+=" ntl-devel"
From 3171129c048430254672b4b0828bd37bab9c1e7f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Wed, 15 Mar 2023 09:27:58 -0300
Subject: [PATCH 2/4] sagemath: rebuild for singular update
Also fix doctests for pkg updates:
- matplotlib 3.7
- ipython 8.12
- nauty 2.8.6
- pythran 0.12.1
And add support for:
- networkx 3.1
We use patches from upstream sagemath to fix all of these.
We also add pythran and sphinx to checkdepends to make sure doctests
pass when they are installed.
---
...support_singular_4.3.1.p3-5e5737a0c.patch} | 0
.../34980-avoid_factoring_in_is_prime.patch | 16 ++--
.../patches/35177-matplotlib_3.7.patch | 95 +++++++++++++++++++
.../patches/35195-workaround_ecl_race.patch | 56 +++++++++++
.../patches/35204-fix_sage-cleaner.patch | 28 ++++++
.../sagemath/patches/35250-nauty_2.8.6.patch | 35 +++++++
.../sagemath/patches/35423-ipython_8.12.patch | 51 ++++++++++
.../patches/35438-pythran_0.12.1.patch | 41 ++++++++
.../sagemath/patches/35584-networkx_3.1.patch | 81 ++++++++++++++++
srcpkgs/sagemath/patches/get_patches | 32 ++++++-
srcpkgs/sagemath/template | 4 +-
11 files changed, 425 insertions(+), 14 deletions(-)
rename srcpkgs/sagemath/patches/{trac-34851-support_singular_4.3.1.p3-5e5737a0c.patch => 34851-support_singular_4.3.1.p3-5e5737a0c.patch} (100%)
create mode 100644 srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch
create mode 100644 srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch
create mode 100644 srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch
create mode 100644 srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch
create mode 100644 srcpkgs/sagemath/patches/35423-ipython_8.12.patch
create mode 100644 srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch
create mode 100644 srcpkgs/sagemath/patches/35584-networkx_3.1.patch
diff --git a/srcpkgs/sagemath/patches/trac-34851-support_singular_4.3.1.p3-5e5737a0c.patch b/srcpkgs/sagemath/patches/34851-support_singular_4.3.1.p3-5e5737a0c.patch
similarity index 100%
rename from srcpkgs/sagemath/patches/trac-34851-support_singular_4.3.1.p3-5e5737a0c.patch
rename to srcpkgs/sagemath/patches/34851-support_singular_4.3.1.p3-5e5737a0c.patch
diff --git a/srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch b/srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch
index ca61a2ada4eb..ee0f0e656b28 100644
--- a/srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch
+++ b/srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch
@@ -1,8 +1,8 @@
diff --git a/src/sage/rings/number_field/number_field_ideal.py b/src/sage/rings/number_field/number_field_ideal.py
-index d5f7157217f..1a9d11aec68 100644
+index d5f7157217f..8ca1f958039 100644
--- a/src/sage/rings/number_field/number_field_ideal.py
+++ b/src/sage/rings/number_field/number_field_ideal.py
-@@ -996,16 +996,36 @@ def is_prime(self):
+@@ -996,16 +996,38 @@ def is_prime(self):
False
sage: K.ideal(17).is_prime() # ramified
False
@@ -33,13 +33,15 @@ index d5f7157217f..1a9d11aec68 100644
+ K = self.number_field().pari_nf()
+ I = self.pari_hnf()
+
-+ self._pari_prime = K.idealismaximal(I) or None
++ candidate = K.idealismaximal(I) or None
+
+ # PARI uses probabilistic primality testing inside idealismaximal().
-+ if self._pari_prime \
-+ and get_flag(None, 'arithmetic') \
-+ and not self._pari_prime[0].isprime():
-+ self._pari_prime = None
++ if get_flag(None, 'arithmetic'):
++ # proof required, check using isprime()
++ if candidate and not candidate[0].isprime():
++ candidate = None
++
++ self._pari_prime = candidate
+
+ return self._pari_prime is not None
diff --git a/srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch b/srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch
new file mode 100644
index 000000000000..007f3324cfe4
--- /dev/null
+++ b/srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch
@@ -0,0 +1,95 @@
+diff --git a/src/sage/plot/complex_plot.pyx b/src/sage/plot/complex_plot.pyx
+index b77c69b2f77..0586a96ae55 100644
+--- a/src/sage/plot/complex_plot.pyx
++++ b/src/sage/plot/complex_plot.pyx
+@@ -563,7 +563,7 @@ def complex_to_cmap_rgb(z_values, cmap='turbo', contoured=False, tiled=False,
+ import matplotlib as mpl
+
+ if isinstance(cmap, str):
+- cmap = mpl.cm.get_cmap(cmap)
++ cmap = mpl.colormaps[cmap]
+
+ if contour_base is None:
+ if contour_type == "linear":
+@@ -1206,11 +1206,11 @@ def complex_plot(f, x_range, y_range, contoured=False, tiled=False, cmap=None,
+ domain = np.linspace(0, 1, 256)
+ shifted_domain = np.roll(domain, 128)
+ default_cmap = mpl.colors.LinearSegmentedColormap.from_list(
+- "sage_default", mpl.cm.get_cmap('hsv')(shifted_domain)
++ "sage_default", mpl.colormaps['hsv'](shifted_domain)
+ )
+ cmap = default_cmap
+ else:
+- cmap = mpl.cm.get_cmap(cmap)
++ cmap = mpl.colormaps[cmap]
+ rgbs = complex_to_cmap_rgb(
+ z_values, cmap=cmap, contoured=contoured, tiled=tiled,
+ contour_type=contour_type, contour_base=contour_base,
+diff --git a/src/sage/plot/contour_plot.py b/src/sage/plot/contour_plot.py
+index c0cab456686..4accb309580 100644
+--- a/src/sage/plot/contour_plot.py
++++ b/src/sage/plot/contour_plot.py
+@@ -848,9 +848,7 @@ def f(x,y): return cos(x) + sin(y)
+
+ sage: contour_plot(lambda x,y: 0, (-1,1), (-1,1),
+ ....: contours=[0], fill=False, cmap=['blue'])
+- ...
+- UserWarning: No contour levels were found within the data range.
+- Graphics object consisting of 1 graphics primitive
++ ...Graphics object consisting of 1 graphics primitive
+
+ .. PLOT::
+
+@@ -874,8 +872,7 @@ def f(x,y): return cos(x) + sin(y)
+ Check that :trac:`18074` is fixed::
+
+ sage: contour_plot(0, (0,1), (0,1))
+- ... UserWarning: No contour levels were found within the data range.
+- Graphics object consisting of 1 graphics primitive
++ ...Graphics object consisting of 1 graphics primitive
+
+ Domain points in :trac:`11648` with complex output are now skipped::
+
+diff --git a/src/sage/plot/graphics.py b/src/sage/plot/graphics.py
+index 64ea1a7e10f..cdc99ced263 100644
+--- a/src/sage/plot/graphics.py
++++ b/src/sage/plot/graphics.py
+@@ -2341,7 +2341,7 @@ def _matplotlib_tick_formatter(self, subplot, base=(10, 10),
+ sage: subplot = Figure().add_subplot(111)
+ sage: p._objects[0]._render_on_subplot(subplot)
+ sage: p._matplotlib_tick_formatter(subplot, **d)
+- (<AxesSubplot:...>,
++ (<Axes...>,
+ <matplotlib.ticker.MaxNLocator object at ...>,
+ <matplotlib.ticker.MaxNLocator object at ...>,
+ <matplotlib.ticker.ScalarFormatter object at ...>,
+diff --git a/src/sage/plot/multigraphics.py b/src/sage/plot/multigraphics.py
+index 99c817f03a6..ae85183dc93 100644
+--- a/src/sage/plot/multigraphics.py
++++ b/src/sage/plot/multigraphics.py
+@@ -1207,7 +1207,7 @@ def _add_subplot(self, figure, index, **options):
+ sage: fig = Figure()
+ sage: ax1 = G._add_subplot(fig, 0)
+ sage: type(ax1)
+- <class 'matplotlib.axes._subplots.AxesSubplot'>
++ <class 'matplotlib.axes...'>
+ sage: ax2 = G._add_subplot(fig, 1)
+ sage: fig.get_axes() == [ax1, ax2]
+ True
+diff --git a/src/sage/plot/plot3d/plot_field3d.py b/src/sage/plot/plot3d/plot_field3d.py
+index bdf39391d3e..fe10e27f58f 100644
+--- a/src/sage/plot/plot3d/plot_field3d.py
++++ b/src/sage/plot/plot3d/plot_field3d.py
+@@ -126,9 +126,9 @@ def plot_vector_field3d(functions, xrange, yrange, zrange,
+ vectors = [vector((ff(*point), gg(*point), hh(*point))) for point in points]
+
+ try:
+- from matplotlib.cm import get_cmap
+- cm = get_cmap(colors)
+- except (TypeError, ValueError):
++ import matplotlib as mpl
++ cm = mpl.colormaps[colors]
++ except (TypeError, KeyError):
+ cm = None
+ if cm is None:
+ if isinstance(colors, (list, tuple)):
diff --git a/srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch b/srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch
new file mode 100644
index 000000000000..1e0a708e8068
--- /dev/null
+++ b/srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch
@@ -0,0 +1,56 @@
+diff --git a/src/sage/interfaces/maxima_lib.py b/src/sage/interfaces/maxima_lib.py
+index c9ca5e30939..9459cb70334 100644
+--- a/src/sage/interfaces/maxima_lib.py
++++ b/src/sage/interfaces/maxima_lib.py
+@@ -77,6 +77,26 @@
+ sage: bar == foo
+ True
+
++TESTS:
++
++Check our workaround for a race in ecl works, see :trac:`26968`.
++We use a temporary `MAXIMA_USERDIR` so it's empty; we place it
++in `DOT_SAGE` since we expect it to have more latency than `/tmp`.
++
++ sage: import tempfile, subprocess
++ sage: tmpdir = tempfile.TemporaryDirectory(dir=DOT_SAGE)
++ sage: _ = subprocess.run(['sage', '-c', # long time
++ ....: f'''
++ ....: import os
++ ....: os.environ["MAXIMA_USERDIR"] = "{tmpdir.name}"
++ ....: if not os.fork():
++ ....: import sage.interfaces.maxima_lib
++ ....: else:
++ ....: import sage.interfaces.maxima_lib
++ ....: os.wait()
++ ....: '''])
++ sage: tmpdir.cleanup()
++
+ """
+
+ # ****************************************************************************
+@@ -116,7 +136,23 @@
+ ecl_eval("(setq $nolabels t))")
+ ecl_eval("(defvar *MAXIMA-LANG-SUBDIR* NIL)")
+ ecl_eval("(set-locale-subdir)")
+-ecl_eval("(set-pathnames)")
++
++try:
++ ecl_eval("(set-pathnames)")
++except RuntimeError:
++ # Recover from :trac:`26968` by creating `*maxima-objdir*` here.
++ # This cannot be done before calling `(set-pathnames)` since
++ # `*maxima-objdir*` is computed there.
++ # We use python `os.makedirs()` which is immune to the race.
++ # Using `(ensure-directories-exist ...)` in lisp would be
++ # subject to the same race condition and since `*maxima-objdir*`
++ # has multiple components this is quite plausible to happen.
++ maxima_objdir = ecl_eval("*maxima-objdir*").python()[1:-1]
++ import os
++ os.makedirs(maxima_objdir, exist_ok=True)
++ # Call `(set-pathnames)` again to complete its job.
++ ecl_eval("(set-pathnames)")
++
+ ecl_eval("(defun add-lineinfo (x) x)")
+ ecl_eval('(defun principal nil (cond ($noprincipal (diverg)) ((not pcprntd) (merror "Divergent Integral"))))')
+ ecl_eval("(remprop 'mfactorial 'grind)") # don't use ! for factorials (#11539)
diff --git a/srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch b/srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch
new file mode 100644
index 000000000000..fc3e40da2a88
--- /dev/null
+++ b/srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch
@@ -0,0 +1,28 @@
+diff --git a/src/bin/sage-cleaner b/src/bin/sage-cleaner
+index e2e578eec60..dc7d8f0482e 100755
+--- a/src/bin/sage-cleaner
++++ b/src/bin/sage-cleaner
+@@ -99,6 +99,15 @@ def cleanup():
+
+ return len(pid_list)
+
++def cleanup_cruft():
++ """ remove directories leftover from improper shutdown """
++ tmp_dirs = os.listdir(SAGE_TMP_ROOT)
++ for dir_entry in tmp_dirs:
++ baddir = os.path.join(SAGE_TMP_ROOT, dir_entry)
++ if os.path.isdir(baddir):
++ logger.warning('Removing old directory %s from SAGE_TMP_ROOT', baddir)
++ rm_rf(baddir)
++
+ def kill_spawned_jobs(jobfile, parent_pid):
+ logger.info("Killing %s's spawned jobs", parent_pid)
+ killed_them_all = True
+@@ -193,6 +202,7 @@ if __name__ == '__main__':
+ setup_daemon()
+ fix_old_mistakes()
+ logger.info("Starting sage-cleaner with PID %s", os.getpid())
++ cleanup_cruft()
+
+ if len(sys.argv) > 1:
+ wait = int(sys.argv[1])
diff --git a/srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch b/srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch
new file mode 100644
index 000000000000..ea210e20ae52
--- /dev/null
+++ b/srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch
@@ -0,0 +1,35 @@
+diff --git a/src/sage/graphs/generators/families.py b/src/sage/graphs/generators/families.py
+index ec6a5c19e60..9dd7bc1cb1e 100644
+--- a/src/sage/graphs/generators/families.py
++++ b/src/sage/graphs/generators/families.py
+@@ -3660,7 +3660,7 @@ def nauty_gentreeg(options="", debug=False):
+
+ sage: gen = graphs.nauty_gentreeg("4", debug=True)
+ sage: print(next(gen))
+- >A ...gentreeg Z=2:3 D=3 n=4
++ >A ...gentreeg ...
+ sage: gen = graphs.nauty_gentreeg("4 -q", debug=True)
+ sage: next(gen)
+ ''
+@@ -3687,7 +3687,7 @@ def nauty_gentreeg(options="", debug=False):
+ sage: list(graphs.nauty_gentreeg("3 -x", debug=True))
+ ['>E Usage: ...gentreeg [-D#] [-Z#:#] [-ulps] [-q] n [res/mod] ...
+ sage: list(graphs.nauty_gentreeg("3", debug=True))
+- ['>A ...gentreeg Z=2:2 D=2 n=3\n', Graph on 3 vertices]
++ ['>A ...gentreeg ...\n', Graph on 3 vertices]
+ """
+ import shlex
+ from sage.features.nauty import NautyExecutable
+diff --git a/src/sage/graphs/graph_generators.py b/src/sage/graphs/graph_generators.py
+index df88bbe2713..1a8016976c2 100644
+--- a/src/sage/graphs/graph_generators.py
++++ b/src/sage/graphs/graph_generators.py
+@@ -966,7 +966,7 @@ def nauty_geng(self, options="", debug=False):
+ ...
+ ValueError: wrong format of parameter option
+ sage: list(graphs.nauty_geng("-c3", debug=True))
+- ['>E Usage: ...geng [-cCmtfbd#D#] [-uygsnh] [-lvq] ...
++ ['>E Usage: ...geng ...\n']
+ sage: list(graphs.nauty_geng("-c 3", debug=True))
+ ['>A ...geng -cd1D2 n=3 e=2-3\n', Graph on 3 vertices, Graph on 3 vertices]
+ """
diff --git a/srcpkgs/sagemath/patches/35423-ipython_8.12.patch b/srcpkgs/sagemath/patches/35423-ipython_8.12.patch
new file mode 100644
index 000000000000..46bda084e48e
--- /dev/null
+++ b/srcpkgs/sagemath/patches/35423-ipython_8.12.patch
@@ -0,0 +1,51 @@
+diff --git a/src/sage/repl/inputhook.py b/src/sage/repl/inputhook.py
+index da5df0268c0..7f7894f6dcf 100644
+--- a/src/sage/repl/inputhook.py
++++ b/src/sage/repl/inputhook.py
+@@ -17,6 +17,8 @@
+
+ import select
+ import errno
++import contextlib
++import io
+
+ from IPython import get_ipython
+ from IPython.terminal.pt_inputhooks import register
+@@ -47,15 +49,27 @@ def install():
+ """
+ Install the Sage input hook
+
+- EXAMPLES::
++ EXAMPLES:
++
++ Make sure ipython is running so we really test this function::
++
++ sage: from sage.repl.interpreter import get_test_shell
++ sage: get_test_shell()
++ <sage.repl.interpreter.SageTestShell object at ...>
++
++ Run the function twice, to check it is idempotent (see :trac:`35235`)::
+
+ sage: from sage.repl.inputhook import install
+ sage: install()
++ sage: install()
+ """
+ ip = get_ipython()
+ if not ip:
+ return # Not running in ipython, e.g. doctests
+- ip.enable_gui('sage')
++ if ip._inputhook != sage_inputhook:
++ # silence `ip.enable_gui()` useless output
++ with contextlib.redirect_stdout(io.StringIO()):
++ ip.enable_gui('sage')
+
+
+ def uninstall():
+@@ -71,4 +85,6 @@ def uninstall():
+ if not ip:
+ return
+ if ip._inputhook == sage_inputhook:
+- ip.enable_gui(None)
++ # silence `ip.enable_gui()` useless output
++ with contextlib.redirect_stdout(io.StringIO()):
++ ip.enable_gui(None)
diff --git a/srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch b/srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch
new file mode 100644
index 000000000000..2cdc674d4f9e
--- /dev/null
+++ b/srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch
@@ -0,0 +1,41 @@
+From 532fbbaf71bb41c73920b584108eb2a09d6deeb1 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
+Date: Tue, 4 Apr 2023 12:56:57 -0300
+Subject: [PATCH] Ignore deprecation warnings triggered by pythran 0.12.1
+
+These happen with python 3.11, setuptools 67.6.1, numpy 1.24.2.
+When pythran 0.12.1 is installed, I get 24 doctest failures due to
+deprecation warnings; they are all gone with this commit.
+
+[backported from 839a6e928c264a9863bd42860c78ae95a6d9f3e0]
+---
+ src/sage/all.py | 12 ++++++++++--
+ 1 file changed, 10 insertions(+), 2 deletions(-)
+
+diff --git a/src/sage/all.py b/src/sage/all.py
+index 93588df1b93..ee775aad0e9 100644
+--- a/src/sage/all.py
++++ b/src/sage/all.py
+@@ -96,9 +96,17 @@ warnings.filterwarnings('ignore', category=DeprecationWarning,
+ warnings.filterwarnings('ignore', category=DeprecationWarning,
+ module='(.*[.]_vendor[.])?packaging')
+
+-# Ignore numpy warnings triggered by pythran
++# Ignore a few warnings triggered by pythran 0.12.1
+ warnings.filterwarnings('ignore', category=DeprecationWarning,
+- module='pythran')
++ message='\n\n `numpy.distutils` is deprecated since NumPy 1.23.0',
++ module='pythran.dist')
++warnings.filterwarnings('ignore', category=DeprecationWarning,
++ message='pkg_resources is deprecated as an API|'
++ 'Deprecated call to `pkg_resources.declare_namespace(.*)`',
++ module='pkg_resources')
++warnings.filterwarnings('ignore', category=DeprecationWarning,
++ message='msvccompiler is deprecated and slated to be removed',
++ module='distutils.msvccompiler')
+
+ warnings.filterwarnings('ignore', category=DeprecationWarning,
+ message='The distutils(.sysconfig module| package) is deprecated',
+--
+2.40.0
+
diff --git a/srcpkgs/sagemath/patches/35584-networkx_3.1.patch b/srcpkgs/sagemath/patches/35584-networkx_3.1.patch
new file mode 100644
index 000000000000..66eedecff7c6
--- /dev/null
+++ b/srcpkgs/sagemath/patches/35584-networkx_3.1.patch
@@ -0,0 +1,81 @@
+diff --git a/src/sage/graphs/graph.py b/src/sage/graphs/graph.py
+index c2e42bcbd3..b6a10efbf4 100644
+--- a/src/sage/graphs/graph.py
++++ b/src/sage/graphs/graph.py
+@@ -6786,13 +6786,21 @@ def cliques_number_of(self, vertices=None, cliques=None):
+ {(0, 0): 2, (0, 1): 3, (0, 2): 2, (1, 0): 2, (1, 1): 3, (1, 2): 2}
+ sage: F.cliques_number_of(vertices=[(0, 1), (1, 2)])
+ {(0, 1): 3, (1, 2): 2}
++ sage: F.cliques_number_of(vertices=(0, 1))
++ 3
+ sage: G = Graph({0:[1,2,3], 1:[2], 3:[0,1]})
+ sage: G.show(figsize=[2,2])
+ sage: G.cliques_number_of()
+ {0: 2, 1: 2, 2: 1, 3: 1}
+ """
+- import networkx
+- return networkx.number_of_cliques(self.networkx_graph(), vertices, cliques)
++ if cliques is None:
++ cliques = self.cliques_maximal()
++
++ if vertices in self: # single vertex
++ return sum(1 for c in cliques if vertices in c)
++ else:
++ return { v : sum(1 for c in cliques if v in c)
++ for v in vertices or self }
+
+ @doc_index("Clique-related methods")
+ def cliques_get_max_clique_graph(self):
+@@ -7493,17 +7501,32 @@ def cliques_containing_vertex(self, vertices=None, cliques=None):
+
+ sage: C = Graph('DJ{')
+ sage: C.cliques_containing_vertex()
+- {0: [[4, 0]], 1: [[4, 1, 2, 3]], 2: [[4, 1, 2, 3]], 3: [[4, 1, 2, 3]], 4: [[4, 0], [4, 1, 2, 3]]}
++ {0: [[0, 4]],
++ 1: [[1, 2, 3, 4]],
++ 2: [[1, 2, 3, 4]],
++ 3: [[1, 2, 3, 4]],
++ 4: [[0, 4], [1, 2, 3, 4]]}
++ sage: C.cliques_containing_vertex(4)
++ [[0, 4], [1, 2, 3, 4]]
++ sage: C.cliques_containing_vertex([0, 1])
++ {0: [[0, 4]], 1: [[1, 2, 3, 4]]}
+ sage: E = C.cliques_maximal()
+ sage: E
+ [[0, 4], [1, 2, 3, 4]]
+ sage: C.cliques_containing_vertex(cliques=E)
+- {0: [[0, 4]], 1: [[1, 2, 3, 4]], 2: [[1, 2, 3, 4]], 3: [[1, 2, 3, 4]], 4: [[0, 4], [1, 2, 3, 4]]}
++ {0: [[0, 4]],
++ 1: [[1, 2, 3, 4]],
++ 2: [[1, 2, 3, 4]],
++ 3: [[1, 2, 3, 4]],
++ 4: [[0, 4], [1, 2, 3, 4]]}
+
+ sage: G = Graph({0:[1,2,3], 1:[2], 3:[0,1]})
+ sage: G.show(figsize=[2,2])
+ sage: G.cliques_containing_vertex()
+- {0: [[0, 1, 2], [0, 1, 3]], 1: [[0, 1, 2], [0, 1, 3]], 2: [[0, 1, 2]], 3: [[0, 1, 3]]}
++ {0: [[0, 1, 2], [0, 1, 3]],
++ 1: [[0, 1, 2], [0, 1, 3]],
++ 2: [[0, 1, 2]],
++ 3: [[0, 1, 3]]}
+
+ Since each clique of a 2 dimensional grid corresponds to an edge, the
+ number of cliques in which a vertex is involved equals its degree::
+@@ -7518,8 +7541,14 @@ def cliques_containing_vertex(self, vertices=None, cliques=None):
+ sage: sorted(sorted(x for x in L) for L in d[(0, 1)])
+ [[(0, 0), (0, 1)], [(0, 1), (0, 2)], [(0, 1), (1, 1)]]
+ """
+- import networkx
+- return networkx.cliques_containing_node(self.networkx_graph(), vertices, cliques)
++ if cliques is None:
++ cliques = self.cliques_maximal()
++
++ if vertices in self: # single vertex
++ return [c for c in cliques if vertices in c]
++ else:
++ return { v : [c for c in cliques if v in c]
++ for v in vertices or self }
+
+ @doc_index("Clique-related methods")
+ def clique_complex(self):
diff --git a/srcpkgs/sagemath/patches/get_patches b/srcpkgs/sagemath/patches/get_patches
index c98da68683cc..871ae38577fd 100755
--- a/srcpkgs/sagemath/patches/get_patches
+++ b/srcpkgs/sagemath/patches/get_patches
@@ -19,7 +19,7 @@ get_trac() {
ticket=$1
desc=$(echo "$2" | sed -e 's/ /_/g')
commit=$3
- $DO wget "$URL_BASE_COMPARE$commit.diff" -O "trac-$ticket-$desc-$commit.patch"
+ $DO wget "$URL_BASE_COMPARE$commit.diff" -O "$ticket-$desc-$commit.patch"
}
# run from patches dir
@@ -29,13 +29,35 @@ cd $(dirname "$0")
get_trac 34851 "support singular 4.3.1.p3" 5e5737a0c
get_pr 35068 "fix tests giac 1.9.0.35" patch
-# positive review
+# merged in 10.0.beta1
+get_pr 35058 "skip unstable tests klyachko"
+
+# merged in 10.0.beta2
get_pr 34994 "fix tests numpy 1.24"
get_pr 34997 "fix edge case of integer_check"
-get_pr 35058 "skip unstable tests klyachko"
-get_pr 35094 "support gap 4.12" # includes PR 35093
-# needs review
+# merged in 10.0.beta3
get_pr 34995 "support tachyon 0.99.2"
+
+# merged in 10.0.beta4
get_pr 34980 "avoid factoring in is_prime"
+
+# merged in 10.0.beta5
+get_pr 35094 "support gap 4.12" # includes PR 35093
+
+# merged in 10.0.beta6
get_pr 35127 "fix very slow test stream.py"
+get_pr 35177 "matplotlib 3.7"
+get_pr 35195 "workaround ecl race"
+get_pr 35204 "fix sage-cleaner"
+
+# merged in 10.0.beta7
+get_pr 35250 "nauty 2.8.6"
+
+# merged in 10.0.beta8
+#get_pr 35337 "ipython 8.11"
+get_pr 35423 "ipython 8.12" # includes PR 35337
+get_pr 35438 "pythran 0.12.1"
+
+# needs review
+get_pr 35584 "networkx 3.1"
diff --git a/srcpkgs/sagemath/template b/srcpkgs/sagemath/template
index 75695f0e5f87..66a543efd21d 100644
--- a/srcpkgs/sagemath/template
+++ b/srcpkgs/sagemath/template
@@ -1,7 +1,7 @@
# Template file for 'sagemath'
pkgname=sagemath
version=9.8
-revision=1
+revision=2
build_wrksrc=pkgs/sagemath-standard
build_style=python3-module
_bindir=/usr/lib/sagemath/$version/bin
@@ -26,7 +26,7 @@ depends="FlintQS eclib-devel fflas-ffpack flintlib-devel gcc-fortran gd-devel
python3-sympy python3-traitlets sage-data-combinatorial_designs
sage-data-conway_polynomials sage-data-elliptic_curves sage-data-graphs
sage-data-polytopes_db sympow tachyon threejs-sage"
-checkdepends="$depends"
+checkdepends="$depends pythran python3-Sphinx"
short_desc="Open source mathematics software"
maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
license="GPL-2.0-or-later"
From 09713264ff96b25e7f8e00b02770e7f0bf9891ca Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Fri, 28 Apr 2023 19:38:50 -0300
Subject: [PATCH 3/4] python3-networkx: update to 3.1.
---
srcpkgs/python3-networkx/template | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/python3-networkx/template b/srcpkgs/python3-networkx/template
index 83e21291feb8..526f4c5e259a 100644
--- a/srcpkgs/python3-networkx/template
+++ b/srcpkgs/python3-networkx/template
@@ -1,6 +1,6 @@
# Template file for 'python3-networkx'
pkgname=python3-networkx
-version=2.8.8
+version=3.1
revision=1
build_style=python3-module
# failing in i686
@@ -10,12 +10,12 @@ depends="python3"
checkdepends="python3-numpy python3-scipy python3-matplotlib python3-pandas
python3-lxml python3-sympy python3-pytest-xdist"
short_desc="Python3 package for creating and manipulating graphs and networks"
-maintainer="Orphaned <orphan@voidlinux.org>"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
license="BSD-3-Clause"
homepage="https://networkx.org"
-changelog="https://networkx.org/documentation/stable/release/"
+changelog="https://github.com/networkx/networkx/raw/main/doc/release/release_${version}.rst"
distfiles="${PYPI_SITE}/n/networkx/networkx-${version}.tar.gz"
-checksum=230d388117af870fce5647a3c52401fcf753e94720e6ea6b4197a5355648885e
+checksum=de346335408f84de0eada6ff9fafafff9bcda11f0a0dfaa931133debb146ab61
post_install() {
vlicense LICENSE.txt
From c04d7c667a67f73ab9b48214b3f8715aea2fbc44 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Tue, 25 Apr 2023 13:20:47 -0300
Subject: [PATCH 4/4] sagemath: update to 10.0.rc0.
---
srcpkgs/sagemath/files/sage_conf.py | 1 -
srcpkgs/sagemath/files/timings2.json | 405 ++---
...-support_singular_4.3.1.p3-5e5737a0c.patch | 205 ---
.../34980-avoid_factoring_in_is_prime.patch | 49 -
.../patches/34994-fix_tests_numpy_1.24.patch | 58 -
.../34995-support_tachyon_0.99.2.patch | 57 -
...34997-fix_edge_case_of_integer_check.patch | 36 -
.../35058-skip_unstable_tests_klyachko.patch | 22 -
.../35068-fix_tests_giac_1.9.0.35.patch | 62 -
.../patches/35094-support_gap_4.12.patch | 1303 -----------------
.../35127-fix_very_slow_test_stream.py.patch | 15 -
.../patches/35177-matplotlib_3.7.patch | 95 --
.../patches/35195-workaround_ecl_race.patch | 56 -
.../patches/35204-fix_sage-cleaner.patch | 28 -
.../sagemath/patches/35250-nauty_2.8.6.patch | 35 -
.../sagemath/patches/35423-ipython_8.12.patch | 51 -
.../patches/35438-pythran_0.12.1.patch | 41 -
srcpkgs/sagemath/patches/get_patches | 43 +-
srcpkgs/sagemath/template | 6 +-
19 files changed, 111 insertions(+), 2457 deletions(-)
delete mode 100644 srcpkgs/sagemath/patches/34851-support_singular_4.3.1.p3-5e5737a0c.patch
delete mode 100644 srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch
delete mode 100644 srcpkgs/sagemath/patches/34994-fix_tests_numpy_1.24.patch
delete mode 100644 srcpkgs/sagemath/patches/34995-support_tachyon_0.99.2.patch
delete mode 100644 srcpkgs/sagemath/patches/34997-fix_edge_case_of_integer_check.patch
delete mode 100644 srcpkgs/sagemath/patches/35058-skip_unstable_tests_klyachko.patch
delete mode 100644 srcpkgs/sagemath/patches/35068-fix_tests_giac_1.9.0.35.patch
delete mode 100644 srcpkgs/sagemath/patches/35094-support_gap_4.12.patch
delete mode 100644 srcpkgs/sagemath/patches/35127-fix_very_slow_test_stream.py.patch
delete mode 100644 srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch
delete mode 100644 srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch
delete mode 100644 srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch
delete mode 100644 srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch
delete mode 100644 srcpkgs/sagemath/patches/35423-ipython_8.12.patch
delete mode 100644 srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch
diff --git a/srcpkgs/sagemath/files/sage_conf.py b/srcpkgs/sagemath/files/sage_conf.py
index 00de40f1ee4f..bc5388de8956 100644
--- a/srcpkgs/sagemath/files/sage_conf.py
+++ b/srcpkgs/sagemath/files/sage_conf.py
@@ -1,4 +1,3 @@
# configuration for sage on void linux
SAGE_SHARE = "/usr/share/sagemath"
GAP_SHARE_DIR = "/usr/share/gap"
-GAP_LIB_DIR = "/usr/lib/gap"
diff --git a/srcpkgs/sagemath/files/timings2.json b/srcpkgs/sagemath/files/timings2.json
index bb3098680502..b2b3fe818a20 100644
--- a/srcpkgs/sagemath/files/timings2.json
+++ b/srcpkgs/sagemath/files/timings2.json
@@ -1,281 +1,152 @@
{
- "doc.ca.intro.index": {"walltime": 8},
- "doc.en.constructions.calculus": {"walltime": 64},
- "doc.en.constructions.plotting": {"walltime": 32},
- "doc.en.prep.Advanced-2DPlotting": {"walltime": 16},
- "doc.en.prep.Calculus": {"walltime": 8},
- "doc.en.prep.Symbolics-and-Basic-Plotting": {"walltime": 8},
- "doc.en.thematic_tutorials.explicit_methods_in_number_theory.birds_other": {"walltime": 8},
- "doc.en.thematic_tutorials.explicit_methods_in_number_theory.elliptic_curves": {"walltime": 8},
- "doc.en.thematic_tutorials.geometry.polyhedra_tutorial": {"walltime": 16},
- "doc.en.thematic_tutorials.sandpile": {"walltime": 16},
- "doc.en.thematic_tutorials.vector_calculus.vector_calc_advanced": {"walltime": 32},
- "doc.en.thematic_tutorials.vector_calculus.vector_calc_cartesian": {"walltime": 32},
- "doc.en.thematic_tutorials.vector_calculus.vector_calc_change": {"walltime": 32},
- "doc.en.thematic_tutorials.vector_calculus.vector_calc_curvilinear": {"walltime": 32},
- "doc.en.thematic_tutorials.vector_calculus.vector_calc_plane": {"walltime": 16},
- "doc.ja.tutorial.tour_plotting": {"walltime": 8},
- "sage.algebras.cluster_algebra": {"walltime": 8},
"sage.algebras.commutative_dga": {"walltime": 16},
- "sage.algebras.hecke_algebras.ariki_koike_algebra": {"walltime": 8},
- "sage.algebras.iwahori_hecke_algebra": {"walltime": 8},
- "sage.algebras.lie_algebras.classical_lie_algebra": {"walltime": 128},
- "sage.algebras.lie_algebras.nilpotent_lie_algebra": {"walltime": 16},
- "sage.algebras.quantum_clifford": {"walltime": 16},
- "sage.algebras.quantum_groups.fock_space": {"walltime": 8},
- "sage.algebras.quatalg.quaternion_algebra": {"walltime": 8},
- "sage.algebras.steenrod.steenrod_algebra": {"walltime": 64},
- "sage.algebras.steenrod.steenrod_algebra_bases": {"walltime": 8},
- "sage.algebras.yangian": {"walltime": 8},
- "sage.arith.misc": {"walltime": 32},
+ "sage.algebras.fusion_rings.f_matrix": {"walltime": 16},
+ "sage.algebras.fusion_rings.fusion_ring": {"walltime": 16},
+ "sage.algebras.hecke_algebras.cubic_hecke_algebra": {"walltime": 8},
+ "sage.algebras.lie_conformal_algebras.n2_lie_conformal_algebra": {"walltime": 8},
+ "sage.algebras.quantum_clifford": {"walltime": 8},
+ "sage.algebras.steenrod.steenrod_algebra": {"walltime": 8},
"sage.calculus.calculus": {"walltime": 16},
"sage.calculus.desolvers": {"walltime": 8},
- "sage.calculus.functional": {"walltime": 8},
- "sage.calculus.riemann": {"walltime": 64},
- "sage.calculus.tests": {"walltime": 16},
- "sage.calculus.transforms.dwt": {"walltime": 16},
+ "sage.calculus.riemann": {"walltime": 8},
"sage.calculus.transforms.fft": {"walltime": 8},
"sage.categories.coxeter_groups": {"walltime": 8},
- "sage.categories.finite_monoids": {"walltime": 16},
- "sage.categories.lie_conformal_algebras": {"walltime": 8},
+ "sage.categories.finite_monoids": {"walltime": 8},
"sage.categories.loop_crystals": {"walltime": 8},
- "sage.categories.pushout": {"walltime": 8},
- "sage.categories.super_hopf_algebras_with_basis": {"walltime": 32},
- "sage.categories.super_lie_conformal_algebras": {"walltime": 8},
- "sage.coding.ag_code": {"walltime": 64},
- "sage.coding.ag_code_decoders": {"walltime": 128},
- "sage.coding.binary_code": {"walltime": 8},
- "sage.coding.linear_code": {"walltime": 16},
- "sage.combinat.backtrack": {"walltime": 32},
- "sage.combinat.chas.wqsym": {"walltime": 32},
- "sage.combinat.cluster_algebra_quiver.cluster_seed": {"walltime": 64},
- "sage.combinat.cluster_algebra_quiver.quiver": {"walltime": 128},
- "sage.combinat.crystals.affine_factorization": {"walltime": 16},
- "sage.combinat.crystals.alcove_path": {"walltime": 32},
- "sage.combinat.crystals.highest_weight_crystals": {"walltime": 8},
- "sage.combinat.crystals.kirillov_reshetikhin": {"walltime": 16},
- "sage.combinat.crystals.letters": {"walltime": 8},
- "sage.combinat.crystals.littelmann_path": {"walltime": 16},
- "sage.combinat.crystals.mv_polytopes": {"walltime": 16},
- "sage.combinat.crystals.pbw_crystal": {"walltime": 16},
- "sage.combinat.crystals.star_crystal": {"walltime": 8},
- "sage.combinat.designs.bibd": {"walltime": 8},
- "sage.combinat.designs.database": {"walltime": 16},
+ "sage.coding.ag_code": {"walltime": 32},
+ "sage.coding.ag_code_decoders": {"walltime": 32},
+ "sage.coding.linear_code": {"walltime": 32},
+ "sage.combinat.designs.database": {"walltime": 8},
"sage.combinat.designs.difference_family": {"walltime": 8},
- "sage.combinat.designs.gen_quadrangles_with_spread": {"walltime": 128},
- "sage.combinat.designs.orthogonal_arrays_build_recursive": {"walltime": 16},
- "sage.combinat.designs.orthogonal_arrays_find_recursive": {"walltime": 8},
- "sage.combinat.diagram_algebras": {"walltime": 64},
- "sage.combinat.fqsym": {"walltime": 32},
- "sage.combinat.free_prelie_algebra": {"walltime": 8},
- "sage.combinat.fully_commutative_elements": {"walltime": 8},
- "sage.combinat.grossman_larson_algebras": {"walltime": 8},
- "sage.combinat.interval_posets": {"walltime": 8},
+ "sage.combinat.designs.orthogonal_arrays_build_recursive": {"walltime": 8},
"sage.combinat.k_regular_sequence": {"walltime": 8},
"sage.combinat.k_tableau": {"walltime": 16},
"sage.combinat.matrices.hadamard_matrix": {"walltime": 8},
"sage.combinat.multiset_partition_into_sets_ordered": {"walltime": 8},
- "sage.combinat.ncsf_qsym.ncsf": {"walltime": 16},
- "sage.combinat.ncsf_qsym.qsym": {"walltime": 16},
- "sage.combinat.partition": {"walltime": 16},
- "sage.combinat.partition_kleshchev": {"walltime": 16},
+ "sage.combinat.ncsf_qsym.ncsf": {"walltime": 8},
+ "sage.combinat.ncsf_qsym.qsym": {"walltime": 8},
+ "sage.combinat.partition": {"walltime": 8},
"sage.combinat.partition_tuple": {"walltime": 8},
- "sage.combinat.posets.moebius_algebra": {"walltime": 16},
+ "sage.combinat.permutation": {"walltime": 8},
"sage.combinat.posets.posets": {"walltime": 8},
- "sage.combinat.rigged_configurations.kr_tableaux": {"walltime": 32},
- "sage.combinat.rigged_configurations.rigged_configurations": {"walltime": 16},
- "sage.combinat.rigged_configurations.tensor_product_kr_tableaux": {"walltime": 16},
+ "sage.combinat.rigged_configurations.kr_tableaux": {"walltime": 8},
"sage.combinat.root_system.associahedron": {"walltime": 8},
- "sage.combinat.root_system.branching_rules": {"walltime": 8},
- "sage.combinat.root_system.fusion_ring": {"walltime": 8},
- "sage.combinat.root_system.integrable_representations": {"walltime": 16},
- "sage.combinat.root_system.non_symmetric_macdonald_polynomials": {"walltime": 16},
- "sage.combinat.root_system.pieri_factors": {"walltime": 8},
- "sage.combinat.root_system.plot": {"walltime": 32},
- "sage.combinat.root_system.root_lattice_realization_algebras": {"walltime": 16},
- "sage.combinat.root_system.root_lattice_realizations": {"walltime": 16},
- "sage.combinat.root_system.root_system": {"walltime": 8},
- "sage.combinat.root_system.weyl_group": {"walltime": 8},
- "sage.combinat.rsk": {"walltime": 32},
- "sage.combinat.sf.classical": {"walltime": 16},
- "sage.combinat.sf.jack": {"walltime": 16},
- "sage.combinat.sf.k_dual": {"walltime": 16},
- "sage.combinat.sf.llt": {"walltime": 16},
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- "sage.combinat.sf.new_kschur": {"walltime": 8},
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@@ -283,115 +154,53 @@
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+ "sage.symbolic.integration.integral": {"walltime": 16},
"sage.symbolic.relation": {"walltime": 8},
- "sage.tests.book_schilling_zabrocki_kschur_primer": {"walltime": 32},
- "sage.tests.book_stein_ent": {"walltime": 16},
- "sage.tests.books.computational-mathematics-with-sagemath.combinat_doctest": {"walltime": 32},
- "sage.tests.books.computational-mathematics-with-sagemath.float_doctest": {"walltime": 16},
- "sage.tests.books.computational-mathematics-with-sagemath.graphique_doctest": {"walltime": 32},
- "sage.tests.books.computational-mathematics-with-sagemath.graphtheory_doctest": {"walltime": 8},
- "sage.tests.books.computational-mathematics-with-sagemath.integration_doctest": {"walltime": 32},
- "sage.tests.books.computational-mathematics-with-sagemath.mpoly_doctest": {"walltime": 8},
- "sage.tests.books.computational-mathematics-with-sagemath.nonlinear_doctest": {"walltime": 8},
- "sage.tests.books.computational-mathematics-with-sagemath.recequadiff_doctest": {"walltime": 8},
- "sage.tests.books.computational-mathematics-with-sagemath.sol.graphique_doctest": {"walltime": 16},
- "sage.tests.books.computational-mathematics-with-sagemath.sol.numbertheory_doctest": {"walltime": 16},
- "sage.tests.books.computational-mathematics-with-sagemath.sol.polynomes_doctest": {"walltime": 16},
- "sage.tests.cmdline": {"walltime": 64},
- "sage.tests.gosper-sum": {"walltime": 16},
- "sage.tests.parigp": {"walltime": 8},
- "sage.topology.simplicial_complex": {"walltime": 8},
- "sage.topology.simplicial_complex_examples": {"walltime": 16}
+ "sage.tests.book_schilling_zabrocki_kschur_primer": {"walltime": 16},
+ "sage.tests.book_stein_ent": {"walltime": 8},
+ "sage.topology.simplicial_complex": {"walltime": 16}
}
diff --git a/srcpkgs/sagemath/patches/34851-support_singular_4.3.1.p3-5e5737a0c.patch b/srcpkgs/sagemath/patches/34851-support_singular_4.3.1.p3-5e5737a0c.patch
deleted file mode 100644
index f2f825e4fb10..000000000000
--- a/srcpkgs/sagemath/patches/34851-support_singular_4.3.1.p3-5e5737a0c.patch
+++ /dev/null
@@ -1,205 +0,0 @@
-diff --git a/build/pkgs/singular/checksums.ini b/build/pkgs/singular/checksums.ini
-index 2e33a405d36..313463d2fea 100644
---- a/build/pkgs/singular/checksums.ini
-+++ b/build/pkgs/singular/checksums.ini
-@@ -1,5 +1,5 @@
- tarball=singular-VERSION.tar.gz
--sha1=6c2b622d3681e2de3d58d30c654d43d3e32b720c
--md5=abb1e37c794472e7760655358ab66054
--cksum=17455733
-+sha1=28bb3ee97ef48d04dfa96de182fd93eebe08426c
-+md5=fc0a4f5720dadba45a52ee94324ce00c
-+cksum=1573851737
- upstream_url=ftp://jim.mathematik.uni-kl.de/pub/Math/Singular/SOURCES/4-3-1/singular-VERSION.tar.gz
-diff --git a/build/pkgs/singular/package-version.txt b/build/pkgs/singular/package-version.txt
-index 11300c77e7d..66e2bede53a 100644
---- a/build/pkgs/singular/package-version.txt
-+++ b/build/pkgs/singular/package-version.txt
-@@ -1 +1 @@
--4.3.1p1
-+4.3.1p3
-diff --git a/src/sage/libs/singular/decl.pxd b/src/sage/libs/singular/decl.pxd
-index 8e3ac314b67..747a6b1e2fb 100644
---- a/src/sage/libs/singular/decl.pxd
-+++ b/src/sage/libs/singular/decl.pxd
-@@ -574,7 +574,7 @@ cdef extern from "singular/Singular/libsingular.h":
-
- # gets a component out of a polynomial vector
-
-- poly *pTakeOutComp1(poly **, int)
-+ poly *pTakeOutComp(poly **, int)
-
- # deep copy p
-
-diff --git a/src/sage/libs/singular/singular.pyx b/src/sage/libs/singular/singular.pyx
-index d8ea7b07f3c..3a1271cd59f 100644
---- a/src/sage/libs/singular/singular.pyx
-+++ b/src/sage/libs/singular/singular.pyx
-@@ -1726,20 +1726,21 @@ cdef int overflow_check(unsigned long e, ring *_ring) except -1:
-
- Whether an overflow occurs or not partially depends
- on the number of variables in the ring. See trac ticket
-- :trac:`11856`. With Singular 4, it is by default optimized
-- for at least 4 variables on 64-bit and 2 variables on 32-bit,
-- which in both cases makes a maximal default exponent of
-- 2^16-1.
-+ :trac:`11856`.
-
- EXAMPLES::
-
- sage: P.<x,y> = QQ[]
-- sage: y^(2^16-1)
-- y^65535
-- sage: y^2^16
-+ sage: y^(2^30)
-+ Traceback (most recent call last): # 32-bit
-+ ... # 32-bit
-+ OverflowError: exponent overflow (1073741824) # 32-bit
-+ y^1073741824 # 64-bit
-+ sage: y^2^32
- Traceback (most recent call last):
- ...
-- OverflowError: exponent overflow (65536)
-+ OverflowError: Python int too large to convert to C unsigned long # 32-bit
-+ OverflowError: exponent overflow (4294967296) # 64-bit
- """
- if unlikely(e > _ring.bitmask):
- raise OverflowError("exponent overflow (%d)"%(e))
-diff --git a/src/sage/rings/polynomial/multi_polynomial_ideal.py b/src/sage/rings/polynomial/multi_polynomial_ideal.py
-index 7dc058a22f0..71494eddbc0 100644
---- a/src/sage/rings/polynomial/multi_polynomial_ideal.py
-+++ b/src/sage/rings/polynomial/multi_polynomial_ideal.py
-@@ -60,7 +60,7 @@
- Note that the result of a computation is not necessarily reduced::
-
- sage: (a+b)^17
-- 256*a*b^16 + 256*b^17
-+ a*b^16 + b^17
- sage: S(17) == 0
- True
-
-diff --git a/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx b/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
-index 4dad016b33f..9bf67dd1425 100644
---- a/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
-+++ b/src/sage/rings/polynomial/multi_polynomial_libsingular.pyx
-@@ -193,7 +193,7 @@ from sage.libs.singular.decl cimport (
- p_IsUnit, p_IsOne, p_Series, p_Head, idInit, fast_map_common_subexp, id_Delete,
- p_IsHomogeneous, p_Homogen, p_Totaldegree,pLDeg1_Totaldegree, singclap_pdivide, singclap_factorize,
- idLift, IDELEMS, On, Off, SW_USE_CHINREM_GCD, SW_USE_EZGCD,
-- p_LmIsConstant, pTakeOutComp1, singclap_gcd, pp_Mult_qq, p_GetMaxExp,
-+ p_LmIsConstant, pTakeOutComp, singclap_gcd, pp_Mult_qq, p_GetMaxExp,
- pLength, kNF, p_Neg, p_Minus_mm_Mult_qq, p_Plus_mm_Mult_qq,
- pDiff, singclap_resultant, p_Normalize,
- prCopyR, prCopyR_NoSort)
-@@ -1587,7 +1587,8 @@ cdef class MPolynomialRing_libsingular(MPolynomialRing_base):
- 9/4
-
- sage: P.monomial_quotient(x,y) # Note the wrong result
-- x*y^65535*z^65535
-+ x*y^65535*z^65535 # 32-bit
-+ x*y^1048575*z^1048575 # 64-bit
-
- sage: P.monomial_quotient(x,P(1))
- x
-@@ -2247,10 +2248,11 @@ cdef class MPolynomial_libsingular(MPolynomial):
- 9/4*x^2 - 1/4*y^2 - y - 1
-
- sage: P.<x,y> = PolynomialRing(QQ,order='lex')
-- sage: (x^2^15) * x^2^15
-+ sage: (x^2^32) * x^2^32
- Traceback (most recent call last):
- ...
-- OverflowError: exponent overflow (...)
-+ OverflowError: Python int too large to convert to C unsigned long # 32-bit
-+ OverflowError: exponent overflow (...) # 64-bit
- """
- # all currently implemented rings are commutative
- cdef poly *_p
-@@ -2371,10 +2373,11 @@ cdef class MPolynomial_libsingular(MPolynomial):
- ValueError: not a 2nd power
-
- sage: P.<x,y> = PolynomialRing(QQ,order='lex')
-- sage: (x+y^2^15)^10
-+ sage: (x+y^2^32)^10
- Traceback (most recent call last):
- ....
-- OverflowError: exponent overflow (...)
-+ OverflowError: Python int too large to convert to C unsigned long # 32-bit
-+ OverflowError: exponent overflow (...) # 64-bit
-
- Test fractional powers (:trac:`22329`)::
-
-@@ -3461,7 +3464,7 @@ cdef class MPolynomial_libsingular(MPolynomial):
- x^10000
- no overflow
-
-- sage: n = 1000
-+ sage: n = 100000
- sage: try:
- ....: f = x^n
- ....: f.subs(x = x^n)
-@@ -4567,7 +4570,7 @@ cdef class MPolynomial_libsingular(MPolynomial):
- l = []
- for i from 0 <= i < IDELEMS(res):
- for j from 1 <= j <= IDELEMS(_I):
-- l.append( new_MP(parent, pTakeOutComp1(&res.m[i], j)) )
-+ l.append( new_MP(parent, pTakeOutComp(&res.m[i], 1)) )
-
- id_Delete(&fI, r)
- id_Delete(&_I, r)
-@@ -4635,7 +4638,7 @@ cdef class MPolynomial_libsingular(MPolynomial):
-
- sage: f = 3*x
- sage: f.reduce([2*x,y])
-- 3*x
-+ x
-
- The reduction is not canonical when ``I`` is not a Groebner
- basis::
-diff --git a/src/sage/rings/polynomial/plural.pyx b/src/sage/rings/polynomial/plural.pyx
-index 1c9f35e56ba..587511c3888 100644
---- a/src/sage/rings/polynomial/plural.pyx
-+++ b/src/sage/rings/polynomial/plural.pyx
-@@ -1619,10 +1619,10 @@ cdef class NCPolynomial_plural(RingElement):
- sage: P = A.g_algebra(relations={y*x:-x*y + z}, order='lex')
- sage: P.inject_variables()
- Defining x, z, y
-- sage: (x^2^15) * x^2^15
-+ sage: (x^2^31) * x^2^31
- Traceback (most recent call last):
- ...
-- OverflowError: exponent overflow (65536)
-+ OverflowError: exponent overflow (2147483648)
- """
- # all currently implemented rings are commutative
- cdef poly *_p
-@@ -1689,10 +1689,10 @@ cdef class NCPolynomial_plural(RingElement):
- sage: P = A.g_algebra(relations={y*x:-x*y + z}, order='lex')
- sage: P.inject_variables()
- Defining x, z, y
-- sage: (x+y^2^15)^10
-+ sage: (x+y^2^31)^10
- Traceback (most recent call last):
- ....
-- OverflowError: exponent overflow (327680)
-+ OverflowError: exponent overflow (2147483648)
- """
- if type(exp) is not Integer:
- try:
-diff --git a/src/sage/structure/element.pyx b/src/sage/structure/element.pyx
-index b5d83ef71b6..5c45b3fb528 100644
---- a/src/sage/structure/element.pyx
-+++ b/src/sage/structure/element.pyx
-@@ -2705,10 +2705,10 @@ cdef class RingElement(ModuleElement):
- with Singular 4::
-
- sage: K.<x,y> = ZZ[]
-- sage: (x^12345)^54321
-+ sage: (x^123456)^654321
- Traceback (most recent call last):
- ...
-- OverflowError: exponent overflow (670592745)
-+ OverflowError: exponent overflow (...)
- """
- return arith_generic_power(self, n)
-
diff --git a/srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch b/srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch
deleted file mode 100644
index ee0f0e656b28..000000000000
--- a/srcpkgs/sagemath/patches/34980-avoid_factoring_in_is_prime.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-diff --git a/src/sage/rings/number_field/number_field_ideal.py b/src/sage/rings/number_field/number_field_ideal.py
-index d5f7157217f..8ca1f958039 100644
---- a/src/sage/rings/number_field/number_field_ideal.py
-+++ b/src/sage/rings/number_field/number_field_ideal.py
-@@ -996,16 +996,38 @@ def is_prime(self):
- False
- sage: K.ideal(17).is_prime() # ramified
- False
-+
-+ TESTS:
-+
-+ Check that we do not factor the norm of the ideal, this used
-+ to take half an hour, see :trac:`33360`::
-+
-+ sage: K.<a,b,c> = NumberField([x^2-2,x^2-3,x^2-5])
-+ sage: t = (((-2611940*c + 1925290/7653)*b - 1537130/7653*c
-+ ....: + 10130950)*a + (1343014/7653*c - 8349770)*b
-+ ....: + 6477058*c - 2801449990/4002519)
-+ sage: t.is_prime()
-+ False
- """
- try:
- return self._pari_prime is not None
- except AttributeError:
-- F = self.factor() # factorization with caching
-- if len(F) != 1 or F[0][1] != 1:
-- self._pari_prime = None
-- else:
-- self._pari_prime = F[0][0]._pari_prime
-- return self._pari_prime is not None
-+ pass
-+
-+ K = self.number_field().pari_nf()
-+ I = self.pari_hnf()
-+
-+ candidate = K.idealismaximal(I) or None
-+
-+ # PARI uses probabilistic primality testing inside idealismaximal().
-+ if get_flag(None, 'arithmetic'):
-+ # proof required, check using isprime()
-+ if candidate and not candidate[0].isprime():
-+ candidate = None
-+
-+ self._pari_prime = candidate
-+
-+ return self._pari_prime is not None
-
- def pari_prime(self):
- r"""
diff --git a/srcpkgs/sagemath/patches/34994-fix_tests_numpy_1.24.patch b/srcpkgs/sagemath/patches/34994-fix_tests_numpy_1.24.patch
deleted file mode 100644
index 91f06fd4d173..000000000000
--- a/srcpkgs/sagemath/patches/34994-fix_tests_numpy_1.24.patch
+++ /dev/null
@@ -1,58 +0,0 @@
-diff --git a/src/sage/misc/persist.pyx b/src/sage/misc/persist.pyx
-index 3ac5f1cc2b0..cb1f327c199 100644
---- a/src/sage/misc/persist.pyx
-+++ b/src/sage/misc/persist.pyx
-@@ -157,7 +157,7 @@ def load(*filename, compress=True, verbose=True, **kwargs):
- ....: _ = f.write(code)
- sage: load(t)
- sage: hello
-- <fortran object>
-+ <fortran ...>
- """
- import sage.repl.load
- if len(filename) != 1:
-diff --git a/src/sage/plot/complex_plot.pyx b/src/sage/plot/complex_plot.pyx
-index 6f0aeab87ae..b77c69b2f77 100644
---- a/src/sage/plot/complex_plot.pyx
-+++ b/src/sage/plot/complex_plot.pyx
-@@ -461,6 +461,8 @@ def complex_to_rgb(z_values, contoured=False, tiled=False,
- rgb[i, j, 2] = b
-
- sig_off()
-+ nan_indices = np.isnan(rgb).any(-1) # Mask for undefined points
-+ rgb[nan_indices] = 1 # Make nan_indices white
- return rgb
-
-
-diff --git a/src/sage/plot/histogram.py b/src/sage/plot/histogram.py
-index 3bc2b76b58e..388c2d1391d 100644
---- a/src/sage/plot/histogram.py
-+++ b/src/sage/plot/histogram.py
-@@ -87,13 +87,8 @@ def get_minmax_data(self):
-
- TESTS::
-
-- sage: h = histogram([10,3,5], normed=True)[0]
-- doctest:warning...:
-- DeprecationWarning: the 'normed' option is deprecated. Use 'density' instead.
-- See https://trac.sagemath.org/25260 for details.
-+ sage: h = histogram([10,3,5], density=True)[0]
- sage: h.get_minmax_data()
-- doctest:warning ...
-- ...VisibleDeprecationWarning: Passing `normed=True` on non-uniform bins has always been broken, and computes neither the probability density function nor the probability mass function. The result is only correct if the bins are uniform, when density=True will produce the same result anyway. The argument will be removed in a future version of numpy.
- {'xmax': 10.0, 'xmin': 3.0, 'ymax': 0.476190476190..., 'ymin': 0}
- """
- import numpy
-diff --git a/src/sage/repl/ipython_extension.py b/src/sage/repl/ipython_extension.py
-index 798671aab42..cad6a47ca8b 100644
---- a/src/sage/repl/ipython_extension.py
-+++ b/src/sage/repl/ipython_extension.py
-@@ -405,7 +405,7 @@ def fortran(self, line, cell):
- ....: C END FILE FIB1.F
- ....: ''')
- sage: fib
-- <fortran object>
-+ <fortran ...>
- sage: from numpy import array
- sage: a = array(range(10), dtype=float)
- sage: fib(a, 10)
diff --git a/srcpkgs/sagemath/patches/34995-support_tachyon_0.99.2.patch b/srcpkgs/sagemath/patches/34995-support_tachyon_0.99.2.patch
deleted file mode 100644
index 2769e87f6a4b..000000000000
--- a/srcpkgs/sagemath/patches/34995-support_tachyon_0.99.2.patch
+++ /dev/null
@@ -1,57 +0,0 @@
-diff --git a/src/sage/interfaces/tachyon.py b/src/sage/interfaces/tachyon.py
-index 23671e50892..ce1d50f71bc 100644
---- a/src/sage/interfaces/tachyon.py
-+++ b/src/sage/interfaces/tachyon.py
-@@ -683,12 +683,14 @@
- #*****************************************************************************
-
- import os
-+import re
-
- from sage.cpython.string import bytes_to_str
- from sage.misc.pager import pager
- from sage.misc.superseded import deprecation
- from sage.misc.temporary_file import tmp_filename
- from sage.structure.sage_object import SageObject
-+from sage.misc.cachefunc import cached_method
-
-
- class TachyonRT(SageObject):
-@@ -799,6 +801,11 @@ def __call__(self, model, outfile='sage.png', verbose=1, extra_opts=''):
- Parser failed due to an input file syntax error.
- Aborting render.
- """
-+ if self.version() >= '0.99.2':
-+ # this keyword was changed in 0.99.2
-+ model = model.replace(
-+ " focallength ",
-+ " focaldist ")
- modelfile = tmp_filename(ext='.dat')
- with open(modelfile, 'w') as file:
- file.write(model)
-@@ -851,6 +858,25 @@ def usage(self, use_pager=True):
- else:
- print(r)
-
-+ @cached_method
-+ def version(self):
-+ """
-+ Returns the version of the Tachyon raytracer being used.
-+
-+ TESTS::
-+
-+ sage: tachyon_rt.version() # random
-+ 0.98.9
-+ sage: tachyon_rt.version() >= '0.98.9'
-+ True
-+ """
-+ with os.popen('tachyon') as f:
-+ r = f.readline()
-+ res = re.search(r"Version ([\d.]*)", r)
-+ # debian patches tachyon so it won't report the version
-+ # we hardcode '0.99' since that's indeed the version they ship
-+ return res[1] if res else '0.99'
-+
- def help(self, use_pager=True):
- """
- Deprecated: type 'sage.interfaces.tachyon?' for help
diff --git a/srcpkgs/sagemath/patches/34997-fix_edge_case_of_integer_check.patch b/srcpkgs/sagemath/patches/34997-fix_edge_case_of_integer_check.patch
deleted file mode 100644
index 11eb20d4f735..000000000000
--- a/srcpkgs/sagemath/patches/34997-fix_edge_case_of_integer_check.patch
+++ /dev/null
@@ -1,36 +0,0 @@
-diff --git a/src/sage/arith/long.pxd b/src/sage/arith/long.pxd
-index 1c9a53387a0..d96b98f247c 100644
---- a/src/sage/arith/long.pxd
-+++ b/src/sage/arith/long.pxd
-@@ -270,6 +270,17 @@ cdef inline bint integer_check_long_py(x, long* value, int* err):
- sage: L += [-x for x in L] + [0, long_min()]
- sage: for v in L:
- ....: assert check_long_py(int(v)) == v
-+ sage: check_long_py(int(2^60))
-+ 1152921504606846976 # 64-bit
-+ 'Overflow (...)' # 32-bit
-+ sage: check_long_py(int(2^61))
-+ 2305843009213693952 # 64-bit
-+ 'Overflow (...)' # 32-bit
-+ sage: check_long_py(int(2^62))
-+ 4611686018427387904 # 64-bit
-+ 'Overflow (...)' # 32-bit
-+ sage: check_long_py(int(2^63))
-+ 'Overflow (...)'
- sage: check_long_py(int(2^100))
- 'Overflow (...)'
- sage: check_long_py(int(long_max() + 1))
-@@ -309,7 +320,12 @@ cdef inline bint integer_check_long_py(x, long* value, int* err):
-
- cdef long lead
- cdef long lead_2_overflow = (<long>1) << (BITS_IN_LONG - PyLong_SHIFT)
-- cdef long lead_3_overflow = (<long>1) << (BITS_IN_LONG - 2 * PyLong_SHIFT)
-+ cdef long lead_3_overflow
-+ if BITS_IN_LONG < 2 * PyLong_SHIFT:
-+ # in this case 3 digit is always overflow
-+ lead_3_overflow = 0
-+ else:
-+ lead_3_overflow = (<long>1) << (BITS_IN_LONG - 2 * PyLong_SHIFT)
- if size == 0:
- value[0] = 0
- err[0] = 0
diff --git a/srcpkgs/sagemath/patches/35058-skip_unstable_tests_klyachko.patch b/srcpkgs/sagemath/patches/35058-skip_unstable_tests_klyachko.patch
deleted file mode 100644
index c4d7d5c779d1..000000000000
--- a/srcpkgs/sagemath/patches/35058-skip_unstable_tests_klyachko.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-diff --git a/src/sage/schemes/toric/sheaf/klyachko.py b/src/sage/schemes/toric/sheaf/klyachko.py
-index b1304a16913..77fae4b7545 100644
---- a/src/sage/schemes/toric/sheaf/klyachko.py
-+++ b/src/sage/schemes/toric/sheaf/klyachko.py
-@@ -26,7 +26,7 @@
- (0, 0, 18, 16, 1)
- sage: Gtilde = G_sum.random_deformation()
- sage: V = Gtilde.wedge(2) * K # long time
-- sage: V.cohomology(dim=True, weight=(0,0,0,0)) # long time
-+ sage: V.cohomology(dim=True, weight=(0,0,0,0)) # long time # random failure (see #32773)
- (0, 0, 3, 0, 0)
-
- REFERENCES:
-@@ -948,7 +948,7 @@ def random_deformation(self, epsilon=None):
- sage: V.cohomology(dim=True, weight=(0,))
- (1, 0)
- sage: Vtilde = V.random_deformation()
-- sage: Vtilde.cohomology(dim=True, weight=(0,))
-+ sage: Vtilde.cohomology(dim=True, weight=(0,)) # random failure (see #32773)
- (1, 0)
- """
- filt = self._filt.random_deformation(epsilon)
diff --git a/srcpkgs/sagemath/patches/35068-fix_tests_giac_1.9.0.35.patch b/srcpkgs/sagemath/patches/35068-fix_tests_giac_1.9.0.35.patch
deleted file mode 100644
index d9a9835c696b..000000000000
--- a/srcpkgs/sagemath/patches/35068-fix_tests_giac_1.9.0.35.patch
+++ /dev/null
@@ -1,62 +0,0 @@
-From 9ac7840134054155545e24fa3e66402d42b91c0f Mon Sep 17 00:00:00 2001
-From: Antonio Rojas <arojas@archlinux.org>
-Date: Fri, 20 Jan 2023 21:36:27 +0100
-Subject: [PATCH] Fix tests with giac 1.9.0.35
-
----
- src/sage/libs/giac/giac.pyx | 3 +--
- src/sage/symbolic/relation.py | 15 +++++----------
- 2 files changed, 6 insertions(+), 12 deletions(-)
-
-diff --git a/src/sage/libs/giac/giac.pyx b/src/sage/libs/giac/giac.pyx
-index 4e451dba5e7..ccad5169836 100644
---- a/src/sage/libs/giac/giac.pyx
-+++ b/src/sage/libs/giac/giac.pyx
-@@ -374,8 +374,7 @@ def _giac(s):
-
- sage: x = libgiac('x')
- sage: (1+2*sin(3*x)).solve(x).simplify()
-- Warning, argument is not an equation, solving 1+2*sin(3*x)=0
-- list[-pi/18,7*pi/18]
-+ ...list[-pi/18,7*pi/18]
-
- sage: libgiac.solve('sin(3*x)>2*sin(x)',x)
- Traceback (most recent call last):
-diff --git a/src/sage/symbolic/relation.py b/src/sage/symbolic/relation.py
-index e9dbc0fea30..b8896a94be9 100644
---- a/src/sage/symbolic/relation.py
-+++ b/src/sage/symbolic/relation.py
-@@ -935,8 +935,7 @@ def solve(f, *args, **kwds):
-
- sage: f = (sin(x) - 8*cos(x)*sin(x))*(sin(x)^2 + cos(x)) - (2*cos(x)*sin(x) - sin(x))*(-2*sin(x)^2 + 2*cos(x)^2 - cos(x))
- sage: solve(f, x, algorithm='giac')
-- ...
-- [-2*arctan(sqrt(2)), 0, 2*arctan(sqrt(2)), pi]
-+ ...[-2*arctan(sqrt(2)), 0, 2*arctan(sqrt(2)), pi]
-
- sage: x, y = SR.var('x,y')
- sage: solve([x+y-4,x*y-3],[x,y],algorithm='giac')
-@@ -1440,19 +1439,15 @@ def _giac_solver(f, x, solution_dict=False):
- EXAMPLES::
-
- sage: solve([(2/3)^x-2], [x], algorithm='giac')
-- ...
-- [[-log(2)/(log(3) - log(2))]]
-+ ...[[-log(2)/(log(3) - log(2))]]
- sage: solve([(2/3)^x-2], [x], algorithm='giac', solution_dict=True)
-- ...
-- [{x: -log(2)/(log(3) - log(2))}]
-+ ...[{x: -log(2)/(log(3) - log(2))}]
-
- sage: f = (sin(x) - 8*cos(x)*sin(x))*(sin(x)^2 + cos(x)) - (2*cos(x)*sin(x) - sin(x))*(-2*sin(x)^2 + 2*cos(x)^2 - cos(x))
- sage: solve(f, x, algorithm='giac')
-- ...
-- [-2*arctan(sqrt(2)), 0, 2*arctan(sqrt(2)), pi]
-+ ...[-2*arctan(sqrt(2)), 0, 2*arctan(sqrt(2)), pi]
- sage: solve(f, x, algorithm='giac', solution_dict=True)
-- ...
-- [{x: -2*arctan(sqrt(2))}, {x: 0}, {x: 2*arctan(sqrt(2))}, {x: pi}]
-+ ...[{x: -2*arctan(sqrt(2))}, {x: 0}, {x: 2*arctan(sqrt(2))}, {x: pi}]
-
- sage: x, y = SR.var('x,y')
- sage: solve([x+y-7,x*y-10],[x,y],algorithm='giac')
diff --git a/srcpkgs/sagemath/patches/35094-support_gap_4.12.patch b/srcpkgs/sagemath/patches/35094-support_gap_4.12.patch
deleted file mode 100644
index 499e0c71e256..000000000000
--- a/srcpkgs/sagemath/patches/35094-support_gap_4.12.patch
+++ /dev/null
@@ -1,1303 +0,0 @@
-diff --git a/build/pkgs/gap/checksums.ini b/build/pkgs/gap/checksums.ini
-index 066e943308a..b0ea8ba8818 100644
---- a/build/pkgs/gap/checksums.ini
-+++ b/build/pkgs/gap/checksums.ini
-@@ -1,5 +1,5 @@
- tarball=gap-VERSION.tar.gz
--sha1=4ecdd281b8f430282fb9b12690b06e0a26abde10
--md5=85dc9e459d5b6c66fcad9f468afd3e3e
--cksum=1351843158
-+sha1=a6e36f3f874a2c46f51561402634497eab705cca
-+md5=c5cd9f272f2703d7a3649ad7193b2d90
-+cksum=2760477284
- upstream_url=https://github.com/gap-system/gap/releases/download/vVERSION/gap-VERSION.tar.gz
-diff --git a/build/pkgs/gap/package-version.txt b/build/pkgs/gap/package-version.txt
-index d782fca8f64..f1cd7de1de5 100644
---- a/build/pkgs/gap/package-version.txt
-+++ b/build/pkgs/gap/package-version.txt
-@@ -1 +1 @@
--4.11.1
-+4.12.2
-diff --git a/build/pkgs/gap/spkg-check.in b/build/pkgs/gap/spkg-check.in
-index d9791d33293..d2fccda6e04 100644
---- a/build/pkgs/gap/spkg-check.in
-+++ b/build/pkgs/gap/spkg-check.in
-@@ -3,6 +3,13 @@ cd src
- # #28728: Fix test failure in tst/testinstall/strings.tst
- export LC_CTYPE=en_US.UTF-8
-
-+# #34391: in GAP 4.12 some packages need GAP package io
-+# to let tests run, otherwise this hangs. Thus we install io here.
-+cd pkg/io
-+./configure --with-gaproot=../..
-+make
-+cd ../..
-+
- make testinstall
- if [[ $? -ne 0 ]]; then
- exit 1
-diff --git a/build/pkgs/gap/spkg-install.in b/build/pkgs/gap/spkg-install.in
-index 2ceadf99db4..e2c8b4dca54 100644
---- a/build/pkgs/gap/spkg-install.in
-+++ b/build/pkgs/gap/spkg-install.in
-@@ -8,8 +8,7 @@ export CFLAGS=$CFLAGS_NON_NATIVE
- export CXXFLAGS=$CXXFLAGS_NON_NATIVE
-
- GAP_BUILD_ROOT="$(pwd)"
--GAP_ROOT="$SAGE_LOCAL/share/gap"
--DESTDIR_GAP_ROOT="$SAGE_DESTDIR$GAP_ROOT"
-+GAP_ROOT="$SAGE_LOCAL/lib/gap"
-
- # Enable debug info if requested.
- # Note that -g3 allows you to use preprocessor macros in gdb which are widely used
-@@ -17,37 +16,17 @@ if [ "$SAGE_DEBUG" = yes ] ; then
- export CFLAGS="-O0 -g3 -DDEBUG_MASTERPOINTERS -DDEBUG_GLOBAL_BAGS -DDEBUG_FUNCTIONS_BAGS $CFLAGS"
- fi
-
--sdh_configure $SAGE_CONFIGURE_GMP
--sdh_make -j1
-+# LDFLAGS hack below needed by Semigroups package
-+sdh_configure $SAGE_CONFIGURE_GMP LDFLAGS="-pthread" --prefix=$SAGE_LOCAL
-+sdh_make
-
--# GAP's "make install" is work in progress; we use bits and pieces of it
--# but we install many things manually.
--sdh_make install-headers install-libgap
--
--# Install config.h, which is not currently handled by `make install-headers`
--sdh_install gen/config.h "$SAGE_LOCAL/include/gap"
--
--# Now install the gap executable as "gap-bin"; it will be called normally
--# through our wrapper script that sets the appropriate GAP_ROOT
--SAGE_BIN="$SAGE_LOCAL/bin"
--mkdir -p "$SAGE_DESTDIR$SAGE_BIN" || sdh_die "Failed to create the directory $SAGE_BIN"
--
--./libtool --mode=install install gap "$SAGE_DESTDIR$SAGE_BIN/gap-bin" || \
-- sdh_die "Failed to install gap-bin to $SAGE_BIN"
--
--./libtool --mode=install install gac "$SAGE_DESTDIR$SAGE_BIN/gac" || \
-- sdh_die "Failed to install gac to $SAGE_BIN"
--
--# Now copy additional files GAP needs to run (and a few optional bits) into
--# GAP_ROOT; we don't need everything from the source tree
--sdh_install bin doc gen grp lib src tst sysinfo.gap "$GAP_ROOT"
--
--# GAP's copy of libtool is also used by the toolchain for build GAP packages
--# (i.e. by gac)
--sdh_install libtool "$GAP_ROOT"
-+sdh_make_install
-+# sdh_make install-headers install-libgap
-+# The 'packagemanager' package expects this https://github.com/gap-packages/PackageManager/issues/105
-+mkdir -p "$SAGE_LOCAL/lib/gap/bin"
-
- # Install only the minimal packages GAP needs to run
--sdh_install pkg/GAPDoc-* pkg/primgrp-* pkg/SmallGrp-* pkg/transgrp "$GAP_ROOT"/pkg
-+sdh_install pkg/gapdoc pkg/primgrp pkg/smallgrp pkg/transgrp "$GAP_ROOT"/pkg
-
- # Install additional packages that are not strictly required, but that are
- # typically "expected" to be loaded: These are the default packages that are
-@@ -58,50 +37,25 @@ sdh_install pkg/GAPDoc-* pkg/primgrp-* pkg/SmallGrp-* pkg/transgrp "$GAP_ROOT"/p
- # Also include atlasrep which is a dependency of tomlib
- sdh_install \
- pkg/atlasrep \
-- pkg/autpgrp-* \
-- pkg/alnuth-* \
-- pkg/crisp-* \
-- pkg/ctbllib-* \
-- pkg/FactInt-* \
-+ pkg/autodoc \
-+ pkg/autpgrp \
-+ pkg/alnuth \
-+ pkg/crisp \
-+ pkg/ctbllib \
-+ pkg/factint \
- pkg/fga \
-- pkg/irredsol-* \
-- pkg/laguna-* \
-- pkg/PackageManager-* \
-- pkg/polenta-* \
-- pkg/polycyclic-* \
-- pkg/resclasses-* \
-- pkg/sophus-* \
-- pkg/tomlib-* \
-+ pkg/irredsol \
-+ pkg/laguna \
-+ pkg/packagemanager \
-+ pkg/polenta \
-+ pkg/polycyclic \
-+ pkg/radiroot \
-+ pkg/resclasses \
-+ pkg/sophus \
-+ pkg/tomlib \
-+ pkg/utils \
- "$GAP_ROOT"/pkg
-
--# Install the GAP startup script; ensure it is executable
--sdh_install -T ../gap "$SAGE_BIN/gap"
--chmod +x "$SAGE_DESTDIR$SAGE_BIN/gap"
--
--# Create symlinks under $GAP_ROOT for these executables, as they are expected
--# (especially when building kernel packages) to exist
--ln -sf "../../bin/gap-bin" "$DESTDIR_GAP_ROOT/gap"
--ln -sf "../../bin/gac" "$DESTDIR_GAP_ROOT/gac"
--
--# Fix the $GAP_ROOT/bin/<arch>/src symlink to be relative (otherwise it links
--# to the actual path of the sources GAP was compiled from)
--for srclink in "$DESTDIR_GAP_ROOT"/bin/*/src; do
-- rm -f "$srclink"
-- ln -s "../../src" "$srclink"
--done
--
--# Additional fixups for some files after they have been copied into their
--# destination directory. gac and sysinfo.gap are generated files that contain
--# in them hard-coded references to the GAP build directory, which will soon
--# be going away. This breaks the build toolchain for some compiled GAP
--# packages. We need to replace these paths with the final GAP_ROOT path. The
--# below will work so long as neither of these paths contain '|', and if they do
--# then god help you. https://trac.sagemath.org/ticket/27218
--sed -i -e "s|$GAP_BUILD_ROOT|$GAP_ROOT|g" \
-- "$SAGE_DESTDIR$SAGE_BIN/gac" "$DESTDIR_GAP_ROOT/sysinfo.gap" \
-- "$DESTDIR_GAP_ROOT/bin/gap.sh" "$DESTDIR_GAP_ROOT/doc/make_doc" || \
-- sdh_die "Failed to fix up hard-coded paths in GAP build tools."
--
- # TODO: This seems unnecessary--we are already installing all of doc/ to
- # GAP_ROOT, which is necessary for some functionality in GAP to work. Do
- # we need this? Maybe doc/gap could just be a symlink to gap/doc??
-diff --git a/build/pkgs/gap/spkg-legacy-uninstall b/build/pkgs/gap/spkg-legacy-uninstall
-index d17eb939eb7..a8e5c59e1fb 100755
---- a/build/pkgs/gap/spkg-legacy-uninstall
-+++ b/build/pkgs/gap/spkg-legacy-uninstall
-@@ -4,6 +4,8 @@ rm -rf "$SAGE_LOCAL/gap/gap-4."*
- rm -rf "$SAGE_SHARE/gap"
- rm -f "$SAGE_LOCAL/gap/latest"
- rm -f "$SAGE_LOCAL/bin/gap"
-+rm -f "$SAGE_LOCAL/bin/gac"
-
--# Remove old libgap headers
-+# Remove old libgap headers and library
- rm -rf "$SAGE_LOCAL/include/gap"
-+rm -rf "$SAGE_LOCAL/lib/gap"
-diff --git a/build/pkgs/gap/spkg-prerm.in b/build/pkgs/gap/spkg-prerm.in
-deleted file mode 100644
-index 661d92621fa..00000000000
---- a/build/pkgs/gap/spkg-prerm.in
-+++ /dev/null
-@@ -1,6 +0,0 @@
--# These generated files are placed in directory provided by the SPKG, so
--# delete the generated files first so that their parent directories can be
--# removed during installation
--GAP_ROOT="$SAGE_LOCAL/share/gap"
--rm -f "$GAP_ROOT/pkg/atlasrep/datagens/"*.*
--rm -f "$GAP_ROOT/pkg/atlasrep/dataword/"*.*
-diff --git a/build/pkgs/gap_packages/patches/cohomolo-gcc10.patch b/build/pkgs/gap_packages/patches/cohomolo-gcc10.patch
-deleted file mode 100644
-index e45fe7d9c6f..00000000000
---- a/build/pkgs/gap_packages/patches/cohomolo-gcc10.patch
-+++ /dev/null
-@@ -1,150 +0,0 @@
--diff --git a/pkg/cohomolo-1.6.8/standalone/progs.d/crp1.c b/pkg/cohomolo-1.6.8/standalone/progs.d/crp1.c
--index 3bbdc45..7df699f 100644
----- a/pkg/cohomolo-1.6.8/standalone/progs.d/crp1.c
--+++ b/pkg/cohomolo-1.6.8/standalone/progs.d/crp1.c
--@@ -8,9 +8,8 @@ extern short sp[],**mat[],*psp[],**imcos[],**cpco[],lorb[],
-- short *cst,**cpst,***cdpst,**svptr,*cp,*rel;
-- short *spst,**pspst,**pptr,**cpptr,npt,nb,nph,nph2,npg,npg2,
-- rno,orno,coh_index,*invg;
---FILE *ip,*op;
--
---void seeknln (void) { while (getc(ip)!='\n'); }
--+void seeknln (FILE *ip) { while (getc(ip)!='\n'); }
--
-- /* This program differs from most other permutation programs in that perms are
-- all stored in the single array sp. Schreier vectors are stored in the short
--@@ -23,13 +22,14 @@ void seeknln (void) { while (getc(ip)!='\n'); }
-- int
-- crprog1 (void)
-- { short *pc,*qc,ex,neg; int x;
--+ FILE *ip,*op;
-- short i,j,k,l,m,n,cl,rl,*p,ocl,im,pt,pt1,pn,ipt;
-- if ((ip=fopen(inf2,"r"))== 0)
-- { fprintf(stderr,"Cannot open %s.\n",inf2); return(-1);}
-- fscanf(ip,"%hd%hd%hd%hd",&npt,&nph,&nb,&k);
-- if (nb>=mb) {fprintf(stderr,"nb too big. Increase MB.\n"); return(-1);}
-- if (k<=2) {fprintf(stderr,"inf2 has illegal format.\n"); return(-1); }
--- seeknln(); seeknln();
--+ seeknln(ip); seeknln(ip);
-- for (i=1;i<=nb;i++) fscanf(ip,"%hd",lorb+i);
-- pptr=psp-1; pspst=psp+nph; svptr=cpsp-1; cpst=cpsp+nb;
-- invg=sp; nph2=2*nph; spst=sp+nph2;
--@@ -37,7 +37,7 @@ crprog1 (void)
-- { pptr[i]=spst+(i-1)*npt-1; p=pptr[i];
-- for (j=1;j<=npt;j++) {fscanf(ip,"%hd",&k); p[k]=j; }
-- invg[2*i-2]=2*i-1; invg[2*i-1]=2*i-2;
--- seeknln();
--+ seeknln(ip);
-- }
-- spst+=(npt*nph);
-- for (i=1;i<=nb;i++)
--@@ -75,7 +75,7 @@ crprog1 (void)
-- strcpy(inf1,inf0); strcat(inf1,".rel");
-- if ((ip=fopen(inf1,"r"))==0)
-- { fprintf(stderr,"Cannot open %s.\n",inf1); return(-1);}
--- fscanf(ip,"%hd%hd",&k,&rno); seeknln();
--+ fscanf(ip,"%hd%hd",&k,&rno); seeknln(ip);
-- op=fopen(outft,"w");
-- /* Now we have read everything in, and the computation can start */
-- orno=0;
--diff --git a/pkg/cohomolo-1.6.8/standalone/progs.d/nq+chfns.c b/pkg/cohomolo-1.6.8/standalone/progs.d/nq+chfns.c
--index a7396b2..658496f 100644
----- a/pkg/cohomolo-1.6.8/standalone/progs.d/nq+chfns.c
--+++ b/pkg/cohomolo-1.6.8/standalone/progs.d/nq+chfns.c
--@@ -20,8 +20,6 @@ short mexp=MEXP,mcl=MCL,no,rel[RSP],wt[MEXP],exp,*rpf,*rpb,
-- extern short prime,dim,*spv,**spm,mspace[],*vec[],**mat[],cp[],pinv[],opmats,
-- mm,mv;
-- extern int msp;
---FILE *ip,*op;
---
--
-- int
-- calcmats (void)
--@@ -59,7 +57,7 @@ calcmats (void)
-- }
-- for (i=1;i<=exp;i++) trans(mat[i+exp],mat[i]);
-- if (opmats)
--- { op=fopen(outf,"w");
--+ { FILE *op=fopen(outf,"w");
-- fprintf(op,"%4d%4d%4d\n",prime,dim,exp);
-- for (i=1;i<=exp;i++) printmat(mat[i]);
-- fclose(op);
--@@ -71,6 +69,7 @@ int
-- rdmats (void)
-- /* reads matrices of generators of P */
-- { short i; int quot;
--+ FILE *ip;
-- ip=fopen(inf4,"r");
-- if (ip==0)
-- { fprintf(stderr,"Cannot open %s\n ",inf4); return(-1); }
--@@ -90,12 +89,12 @@ rdmats (void)
-- fclose(ip);
-- return(0);
-- }
---FILE *ip;
--
-- int
-- ingp (int inp)
-- /* Read in output of respcrun -s */
-- { short i,j,k,l,m,*orpf,**pcp;
--+ FILE *ip;
-- ip=fopen(inf3,"r");
-- if (ip==0) { fprintf(stderr,"Cannot open %s\n",inf3); return(-1); }
-- fscanf(ip,"%hd%hd%hd%hd%hd%hd",&prime,&exp,&i,&no,&j,&m);
--diff --git a/pkg/cohomolo-1.6.8/standalone/progs.d/nqmfns.c b/pkg/cohomolo-1.6.8/standalone/progs.d/nqmfns.c
--index 0896551..6841bc8 100644
----- a/pkg/cohomolo-1.6.8/standalone/progs.d/nqmfns.c
--+++ b/pkg/cohomolo-1.6.8/standalone/progs.d/nqmfns.c
--@@ -9,7 +9,6 @@ extern short intexp,mexp,mng,wksp,
-- spugen[],*tlintg[];
-- extern int ptrsp,rsp;
-- short fac;
---FILE *ip,*op;
--
-- int
-- ingp (void)
--@@ -18,6 +17,7 @@ ingp (void)
-- of nqrun, and tails are also read in.
-- */
-- { short i,j,k,l,m,x,y,no,*orpf,*orpb,**pcp; char tails;
--+ FILE *ip;
-- if ((ip=fopen(inf1,"r"))==0)
-- { fprintf(stderr,"Cannot open %s.\n",inf1); return(-1); }
-- fscanf(ip,"%hd%hd%hd%hd%hd%hd",&prime,&exp,&nng,&no,&class,&m);
--@@ -89,6 +89,7 @@ int
-- outgp (void)
-- /* The PCP is output, together with tails */
-- { short i,k,l,**pcp,*b,*e,*c;
--+ FILE *op;
-- op=fopen(outf,"w");
-- fprintf(op,"%4d%4d%4d%4d%4d%4d\n",prime,exp,nng,exp,class,1);
-- for (i=1;i<=exp;i++) fprintf(op,"%4d",wt[i]); fprintf(op,"\n");
--@@ -379,7 +380,7 @@ restart:
-- nng--; mnng--; enexpnt--;
-- if (nng==0)
-- { if (gap)
--- { op=fopen(outfm,"w"); fprintf(op,"COHOMOLO.Multiplier:=[];\n");
--+ { FILE *op=fopen(outfm,"w"); fprintf(op,"COHOMOLO.Multiplier:=[];\n");
-- fclose(op);
-- printf("All new generators eliminated. Multiplier is trivial.\n");
-- }
--diff --git a/pkg/cohomolo-1.6.8/standalone/progs.d/nqmp.c b/pkg/cohomolo-1.6.8/standalone/progs.d/nqmp.c
--index 01cf914..0144883 100644
----- a/pkg/cohomolo-1.6.8/standalone/progs.d/nqmp.c
--+++ b/pkg/cohomolo-1.6.8/standalone/progs.d/nqmp.c
--@@ -9,7 +9,6 @@ extern short intexp,mng,mexp,wksp,
-- spugen[],*intg[],*imintg[],*tlintg[];
-- extern int ptrsp,rsp;
-- short *wf,*wc; char norm;
---FILE *ip,*op;
--
-- /* The data structures for this program and for nqrun are similar.
-- d1 and d2 contain definitions of generators. (Def. comes from commutator
--@@ -35,6 +34,7 @@ nqmprog (void)
-- { short i,j,k,l,m,d,*gi,*gj,*ti,*tj,cl,def,*ps,*pf,**dp,*nrpb,*p,*orpf,*orpb,
-- nb,np,k1,*rno,*covrel,**pgen,tdef,sgn;
-- char nt;
--+ FILE *ip,*op;
-- if (ingp() == -1) {fprintf(stderr,"Input error.\n"); return(-1); }
-- eexpnt=expnt+exp; enexpnt=nexpnt+nng;
--
-diff --git a/build/pkgs/gap_packages/patches/guava_leon_includes.patch b/build/pkgs/gap_packages/patches/guava_leon_includes.patch
-deleted file mode 100644
-index cdcd19cc3e8..00000000000
---- a/build/pkgs/gap_packages/patches/guava_leon_includes.patch
-+++ /dev/null
-@@ -1,13 +0,0 @@
----- a/pkg/guava-3.15/src/leon/src/generate.c Sat Feb 29 09:02:10 2020
----- b/pkg/guava-3.15/src/leon/src/generate.c Thu Sep 24 13:58:36 2020
--***************
--*** 115,120 ****
----- 115,122 ----
-- #include "groupio.h"
-- #include "enum.h"
-- #include "storage.h"
--+ #include "chbase.h"
--+ #include "inform.h"
--
-- #ifdef ALT_TIME_HEADER
-- #include "cputime.h"
-diff --git a/build/pkgs/gap_packages/spkg-install.in b/build/pkgs/gap_packages/spkg-install.in
-index 168e6b11532..6dff182a48f 100644
---- a/build/pkgs/gap_packages/spkg-install.in
-+++ b/build/pkgs/gap_packages/spkg-install.in
-@@ -1,4 +1,4 @@
--GAP_ROOT="$SAGE_LOCAL/share/gap"
-+GAP_ROOT="$SAGE_LOCAL/lib/gap"
- PKG_DIR="$GAP_ROOT/pkg"
-
- PKG_SRC_DIR="$(pwd)/src/pkg"
-@@ -11,33 +11,31 @@ cd "$PKG_SRC_DIR"
- # (GAP 4.8.6 still had it, but this is gone in 4.10)
-
- sdh_install \
-- aclib-* \
-- AutoDoc-* \
-- corelg-* \
-- crime-* \
-+ aclib \
-+ corelg \
-+ crime \
- cryst \
- crystcat \
-- design-* \
-+ design \
- gbnp \
-- genss-* \
-- hap-* \
-- hapcryst-* \
-- hecke-* \
-- images-* \
-- liealgdb-* \
-- liepring-* \
-- liering-* \
-- loops-* \
-- MapClass-* \
-- polymaking-* \
-- qpa-* \
-- quagroup-* \
-- radiroot-* \
-- repsn-* \
-- sla-* \
-- sonata-* \
-- Toric-* \
-- utils-* \
-+ genss \
-+ hap \
-+ hapcryst \
-+ hecke \
-+ images \
-+ liealgdb \
-+ liepring \
-+ liering \
-+ loops \
-+ mapclass \
-+ polymaking \
-+ qpa \
-+ quagroup \
-+ repsn \
-+ singular \
-+ sla \
-+ sonata \
-+ toric \
- "$PKG_DIR"
-
- install_compiled_pkg()
-@@ -45,27 +43,23 @@ install_compiled_pkg()
- local pkg="$1"
- # Install the bin/ dir (where compiled modules should end up)
- # under <prefix>/lib/gap; we then symlink to it later
-- sdh_install bin "$SAGE_LOCAL/lib/gap/pkg/$pkg"
-+ sdh_install * "$SAGE_LOCAL/lib/gap/pkg/$pkg"
-
-+ # TODO:
- # Clean up any build artificts before installing the rest of the package
- # Also remove configure/Makefiles
- # Note: None, if any of the packages really have a proper install target
-- make clean # Works for some packages but not all
-- rm -rf bin/
-- rm -rf configure configure.* config.* autogen.sh *.m4 Makefile* m4/
-+ #make clean # Works for some packages but not all
-+ #rm -rf bin/
-+ #rm -rf configure configure.* config.* autogen.sh *.m4 Makefile* m4/
-
-- # Create the bin/ symlink
-- ln -s "$SAGE_LOCAL/lib/gap/pkg/$pkg/bin" bin
--
-- # Install the rest of the package files
-- sdh_install * "$PKG_DIR/$pkg"
- }
-
- # Build and install compiled packages:
- #
- # These packages have an old ./configure that take the GAP_ROOT as a positional
- # argument
--for pkg in cohomolo-* crypting-* grape-* guava-* orb-* datastructures-*
-+for pkg in cohomolo crypting grape guava orb datastructures
- do
- echo "Building GAP package $pkg"
- CFLAGS="$CFLAGS -Wno-implicit-function-declaration"
-@@ -91,7 +85,7 @@ pararr=( " " " " "--with-external-planarity" "--with-external-libsemigroups" )
- ##############################################################################
-
- parind=0
--for pkg in nq-* io-* digraphs-* semigroups-*
-+for pkg in nq io digraphs semigroups
- do
- echo "Building GAP package $pkg"
- cd "$PKG_SRC_DIR/$pkg"
-diff --git a/build/pkgs/libsemigroups/checksums.ini b/build/pkgs/libsemigroups/checksums.ini
-index 62c4268515f..4e13a36cb35 100644
---- a/build/pkgs/libsemigroups/checksums.ini
-+++ b/build/pkgs/libsemigroups/checksums.ini
-@@ -1,5 +1,5 @@
- tarball=libsemigroups-VERSION.tar.gz
--sha1=2b16c095cc5ffd3f77a71dfbf48cce188e054c03
--md5=7082cadcf7a195ccb93175cd72b6db95
--cksum=1501022358
-+sha1=86375824b47ce4b0e23570122e873f67136d0c0a
-+md5=ff79ad5fbc8bfeb64d48faaf24106b98
-+cksum=2845045455
- upstream_url=https://github.com/libsemigroups/libsemigroups/releases/download/vVERSION/libsemigroups-VERSION.tar.gz
-diff --git a/build/pkgs/libsemigroups/package-version.txt b/build/pkgs/libsemigroups/package-version.txt
-index 9084fa2f716..f90b1afc082 100644
---- a/build/pkgs/libsemigroups/package-version.txt
-+++ b/build/pkgs/libsemigroups/package-version.txt
-@@ -1 +1 @@
--1.1.0
-+2.3.2
-diff --git a/build/pkgs/libsemigroups/spkg-install.in b/build/pkgs/libsemigroups/spkg-install.in
-index 2aaf0e99043..128b54d2f99 100644
---- a/build/pkgs/libsemigroups/spkg-install.in
-+++ b/build/pkgs/libsemigroups/spkg-install.in
-@@ -1,4 +1,4 @@
- cd src
--sdh_configure
-+sdh_configure --disable-eigen
- sdh_make
- sdh_make_install
-diff --git a/build/pkgs/singular/spkg-configure.m4 b/build/pkgs/singular/spkg-configure.m4
-index d4d145defe3..6a85631f624 100644
---- a/build/pkgs/singular/spkg-configure.m4
-+++ b/build/pkgs/singular/spkg-configure.m4
-@@ -9,52 +9,7 @@ SAGE_SPKG_CONFIGURE([singular], [
- AC_MSG_CHECKING([that Singular's help is working])
- AS_IF([test x`printf "system(\"--browser\", \"builtin\"); \n help;" | Singular 2>&1 | grep "error occurred"` = x], [
- AC_MSG_RESULT(yes)
-- dnl We have Singular. Now determine the shared library path on
-- dnl platforms on which sage.libs.singular needs to reload the library with RTLD_GLOBAL.
-- AS_CASE([$host_os],
-- [cygwin*], [dnl Nothing to do
-- ],
-- [dnl Use pkg-config to get singular's libdir while we're at it. As a
-- dnl moral compromise for using pkg-config, this ultimately allows us
-- dnl to pass an absolute path to dlopen(), which is the only approach
-- dnl that POSIX guarantees will work.
-- PKG_CHECK_VAR([SINGULAR_LIB_DIR], [Singular], [libdir])
-- dnl The acl_shlibext variable is set in the top-level configure.ac.
-- AC_LANG_PUSH(C)
-- ORIG_LIBS="${LIBS}"
-- LIBS="${LIBS} -ldl"
-- AC_MSG_CHECKING([if we can dlopen($LIBSINGULAR_PATH)])
-- LIBSINGULAR_PATH="${SINGULAR_LIB_DIR}/libSingular.${acl_shlibext}"
--
-- dnl if we can dlopen() it, substitute the name for sage_conf;
-- dnl otherwise, fall back to using the SPKG.
-- AC_RUN_IFELSE(
-- [AC_LANG_PROGRAM(
-- [[#include <dlfcn.h>]],
-- [[void* h = dlopen("${LIBSINGULAR_PATH}", RTLD_LAZY | RTLD_GLOBAL);
-- if (h == 0) { return 1; } else { return dlclose(h); }]]
-- )], [
-- AC_MSG_RESULT(yes)
-- ], [
-- dnl try Debian-specific name
-- LIBSINGULAR_PATH="${SINGULAR_LIB_DIR}/libsingular-Singular.${acl_shlibext}"
-- AC_RUN_IFELSE(
-- [AC_LANG_PROGRAM(
-- [[#include <dlfcn.h>]],
-- [[void* h = dlopen("${LIBSINGULAR_PATH}", RTLD_LAZY | RTLD_GLOBAL);
-- if (h == 0) { return 1; } else { return dlclose(h); }]]
-- )], [
-- AC_MSG_RESULT(yes)
-- ], [
-- AC_MSG_RESULT(no)
-- sage_spkg_install_singular=yes
-- ], [AC_MSG_RESULT(yes)])
-- ], [AC_MSG_RESULT(yes)])
--
-- AC_LANG_POP()
-- LIBS="${ORIG_LIBS}"
-- ]
-- )], [
-+ ], [
- AC_MSG_RESULT(no)
- sage_spkg_install_singular=yes
- ]
-@@ -64,20 +19,4 @@ SAGE_SPKG_CONFIGURE([singular], [
- ])
- ])
- ])
--],[],[],[
-- dnl Post-check phase
-- dnl We make the sage_conf substitutions here, because the "default"
-- dnl substitution needs to be made even if we skipped the system-Singular
-- dnl checks themselves.
-- AS_IF([test "x${sage_spkg_install_singular}" = "xyes"], [
-- AS_CASE([$host_os],
-- [cygwin*], [dnl Nothing to do
-- ],
-- [dnl Set shared library path, needed for reloading the library with RTLD_GLOBAL
-- LIBSINGULAR_PATH="\$SAGE_LOCAL/lib/libSingular.${acl_shlibext}"
-- ]
-- )
-- ])
--
-- AC_SUBST(LIBSINGULAR_PATH, "${LIBSINGULAR_PATH}")
- ])
-diff --git a/pkgs/sage-conf/_sage_conf/_conf.py.in b/pkgs/sage-conf/_sage_conf/_conf.py.in
-index 6cd28f558a8..d66bdb3d264 100644
---- a/pkgs/sage-conf/_sage_conf/_conf.py.in
-+++ b/pkgs/sage-conf/_sage_conf/_conf.py.in
-@@ -55,9 +55,6 @@ THREEJS_DIR = SAGE_LOCAL + "/share/threejs-sage"
- OPENMP_CFLAGS = "@OPENMP_CFLAGS@"
- OPENMP_CXXFLAGS = "@OPENMP_CXXFLAGS@"
-
--# The full absolute path to the main Singular library.
--LIBSINGULAR_PATH = "@LIBSINGULAR_PATH@".replace('$SAGE_LOCAL', SAGE_LOCAL)
--
- # Installation location of wheels. This is determined at configuration time
- # and does not depend on the installation location of sage-conf.
- SAGE_SPKG_WHEELS = "@SAGE_VENV@".replace('${SAGE_LOCAL}', SAGE_LOCAL) + "/var/lib/sage/wheels"
-diff --git a/src/doc/en/thematic_tutorials/lie/weyl_groups.rst b/src/doc/en/thematic_tutorials/lie/weyl_groups.rst
-index c917338e444..182e74aad20 100644
---- a/src/doc/en/thematic_tutorials/lie/weyl_groups.rst
-+++ b/src/doc/en/thematic_tutorials/lie/weyl_groups.rst
-@@ -139,12 +139,12 @@ string, which you can print::
- X.1 1 1 1 1 1 1 1 1 1 1 1 1 1
- X.2 1 -1 1 1 -1 1 1 -1 -1 -1 1 1 1
- X.3 2 . 2 -1 . 2 2 . . . -1 2 2
-- X.4 3 -1 -1 . 1 -1 3 -1 1 -1 . -1 3
-- X.5 3 -1 -1 . 1 3 -1 -1 -1 1 . -1 3
-- X.6 3 1 -1 . -1 -1 3 1 -1 1 . -1 3
-- X.7 3 1 -1 . -1 3 -1 1 1 -1 . -1 3
-- X.8 3 -1 3 . -1 -1 -1 -1 1 1 . -1 3
-- X.9 3 1 3 . 1 -1 -1 1 -1 -1 . -1 3
-+ X.4 3 -1 -1 . 1 3 -1 -1 -1 1 . -1 3
-+ X.5 3 1 -1 . -1 3 -1 1 1 -1 . -1 3
-+ X.6 3 -1 3 . -1 -1 -1 -1 1 1 . -1 3
-+ X.7 3 -1 -1 . 1 -1 3 -1 1 -1 . -1 3
-+ X.8 3 1 3 . 1 -1 -1 1 -1 -1 . -1 3
-+ X.9 3 1 -1 . -1 -1 3 1 -1 1 . -1 3
- X.10 4 -2 . -1 . . . 2 . . 1 . -4
- X.11 4 2 . -1 . . . -2 . . 1 . -4
- X.12 6 . -2 . . -2 -2 . . . . 2 6
-diff --git a/src/sage/coding/codecan/autgroup_can_label.pyx b/src/sage/coding/codecan/autgroup_can_label.pyx
-index de5db985e0b..c83b9264e44 100644
---- a/src/sage/coding/codecan/autgroup_can_label.pyx
-+++ b/src/sage/coding/codecan/autgroup_can_label.pyx
-@@ -76,7 +76,7 @@ columns do share the same coloring::
- ((1,),
- (2,),
- (3, 5, 4),
-- (6, 19, 16, 9, 21, 10, 8, 15, 14, 11, 20, 13, 12, 7, 17, 18))
-+ (6, 19, 16, 21, 9, 10, 15, 8, 20, 11, 14, 13, 7, 12, 18, 17))
-
- We can also restrict the group action to linear isometries::
-
-diff --git a/src/sage/coding/linear_code.py b/src/sage/coding/linear_code.py
-index a3ac3ca1547..bfb9f8696e8 100644
---- a/src/sage/coding/linear_code.py
-+++ b/src/sage/coding/linear_code.py
-@@ -465,27 +465,27 @@ def automorphism_group_gens(self, equivalence="semilinear"):
- 0
- sage: C = codes.HammingCode(GF(4, 'z'), 3)
- sage: C.automorphism_group_gens()
-- ([((1, 1, 1, 1, 1, z + 1, z, z + 1, z, z, z, 1, 1, z + 1, z + 1, z, z + 1, z, z + 1, z + 1, z + 1); (1,14,6,7,4,10,11,19)(2,8,16,13,3,17,21,15)(9,12,18,20), Ring endomorphism of Finite Field in z of size 2^2
-+ ([((1, 1, 1, z, z + 1, 1, 1, 1, 1, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z); (1,13,14,20)(2,21,8,18,7,16,19,15)(3,10,5,12,17,9,6,4), Ring endomorphism of Finite Field in z of size 2^2
-+ Defn: z |--> z + 1),
-+ ((z, 1, z, z, z, z + 1, z, z, z, z, z, z, z + 1, z, z, z, z, z + 1, z, z, z); (1,11,5,12,3,19)(2,8)(6,18,13)(7,17,15)(9,10,14,16,20,21), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z + 1),
-- ((z + 1, 1, 1, z, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z + 1, 1, z, z + 1, z + 1, z); (1,18,6,19,2,9,17,10,13,14,21,11,4,5,12)(3,20,7,16,8), Ring endomorphism of Finite Field in z of size 2^2
-- Defn: z |--> z),
- ((z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z); (), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z)],
- 362880)
- sage: C.automorphism_group_gens(equivalence="linear")
-- ([((z + 1, 1, z + 1, z + 1, z + 1, z, 1, z, 1, 1, 1, 1, z + 1, z + 1, z + 1, z, z, 1, z, z, z); (1,15,2,8,16,18,3)(4,9,12,13,20,10,11)(5,21,14,6,7,19,17), Ring endomorphism of Finite Field in z of size 2^2
-+ ([((z, 1, z + 1, z + 1, 1, z + 1, z, 1, z + 1, z + 1, 1, z, 1, z + 1, z, 1, z, 1, z + 1, 1, 1); (1,12,11,10,6,8,9,20,13,21,5,14,3,16,17,19,7,4,2,15,18), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z),
-- ((z + 1, z + 1, z + 1, z + 1, z + 1, 1, z, 1, z, z, z, 1, z, 1, 1, 1, z + 1, z + 1, z + 1, 1, z); (1,15,21,8,9)(2,18,5,3,11,16,7,10,19,13,12,4,17,6,20), Ring endomorphism of Finite Field in z of size 2^2
-+ ((z + 1, z + 1, z + 1, z, 1, 1, z, z, 1, z + 1, z, 1, 1, z, 1, z + 1, z, z + 1, z + 1, 1, z); (1,3,18,2,17,6,19)(4,15,13,20,7,14,16)(5,11,8,21,12,9,10), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z),
- ((z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1, z + 1); (), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z)],
- 181440)
- sage: C.automorphism_group_gens(equivalence="permutational")
-- ([((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,19)(3,17)(4,21)(5,20)(7,14)(9,12)(10,16)(11,15), Ring endomorphism of Finite Field in z of size 2^2
-+ ([((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,11)(3,10)(4,9)(5,7)(12,21)(14,20)(15,19)(16,17), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z),
-- ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,11)(3,10)(4,9)(5,7)(12,21)(14,20)(15,19)(16,17), Ring endomorphism of Finite Field in z of size 2^2
-+ ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (2,18)(3,19)(4,10)(5,16)(8,13)(9,14)(11,21)(15,20), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z),
-- ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,17)(2,8)(3,14)(4,10)(7,12)(9,19)(13,18)(15,20), Ring endomorphism of Finite Field in z of size 2^2
-+ ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (1,19)(3,17)(4,21)(5,20)(7,14)(9,12)(10,16)(11,15), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z),
- ((1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1); (2,13)(3,14)(4,20)(5,11)(8,18)(9,19)(10,15)(16,21), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z)],
-@@ -691,10 +691,10 @@ def _canonize(self, equivalence):
- sage: C_iso == aut_group_can_label.get_canonical_form()
- True
- sage: aut_group_can_label.get_autom_gens()
-- [((1, 1, 1, 1, 1, z + 1, z, z + 1, z, z, z, 1, 1, z + 1, z + 1, z, z + 1, z, z + 1, z + 1, z + 1); (1,14,6,7,4,10,11,19)(2,8,16,13,3,17,21,15)(9,12,18,20), Ring endomorphism of Finite Field in z of size 2^2
-+ [((1, 1, 1, z, z + 1, 1, 1, 1, 1, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z); (1,13,14,20)(2,21,8,18,7,16,19,15)(3,10,5,12,17,9,6,4), Ring endomorphism of Finite Field in z of size 2^2
-+ Defn: z |--> z + 1),
-+ ((z, 1, z, z, z, z + 1, z, z, z, z, z, z, z + 1, z, z, z, z, z + 1, z, z, z); (1,11,5,12,3,19)(2,8)(6,18,13)(7,17,15)(9,10,14,16,20,21), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z + 1),
-- ((z + 1, 1, 1, z, z + 1, z, z, z + 1, z + 1, z + 1, 1, z + 1, z, z, 1, z + 1, 1, z, z + 1, z + 1, z); (1,18,6,19,2,9,17,10,13,14,21,11,4,5,12)(3,20,7,16,8), Ring endomorphism of Finite Field in z of size 2^2
-- Defn: z |--> z),
- ((z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z, z); (), Ring endomorphism of Finite Field in z of size 2^2
- Defn: z |--> z)]
- """
-diff --git a/src/sage/combinat/posets/posets.py b/src/sage/combinat/posets/posets.py
-index 2836d59d960..8c882d5ac3b 100644
---- a/src/sage/combinat/posets/posets.py
-+++ b/src/sage/combinat/posets/posets.py
-@@ -8813,7 +8813,7 @@ def _libgap_(self):
- sage: libgap(P) # optional - gap_packages
- <A poset on 5 points>
- sage: A = libgap(GF(2)).PosetAlgebra(P); A # optional - gap_packages
-- <GF(2)[<quiver with 5 vertices and 5 arrows>]/<two-sided ideal in <GF(2)[<quiver with 5 vertices and 5 arrows>]>, (1 generators)>>
-+ <GF(2)[<quiver with 5 vertices and 5 arrows>]/<two-sided ideal in <GF(2)[<quiver with 5 vertices and 5 arrows>]>, (1 generator)>>
- sage: A.Dimension() # optional - gap_packages
- 13
- """
-diff --git a/src/sage/combinat/root_system/hecke_algebra_representation.py b/src/sage/combinat/root_system/hecke_algebra_representation.py
-index 6b756bafc30..8ac99319bec 100644
---- a/src/sage/combinat/root_system/hecke_algebra_representation.py
-+++ b/src/sage/combinat/root_system/hecke_algebra_representation.py
-@@ -357,7 +357,7 @@ def Tw(self, word, signs=None, scalar=None):
- sage: q1, q2 = K.gens()
- sage: KW = W.algebra(K)
- sage: x = KW.an_element(); x
-- 123 + 3*32 + 2*3 + e
-+ 123 + 3*2312 + 2*31 + e
-
- sage: T = KW.demazure_lusztig_operators(q1,q2)
- sage: T12 = T.Tw( (1,2) )
-diff --git a/src/sage/combinat/symmetric_group_algebra.py b/src/sage/combinat/symmetric_group_algebra.py
-index b8a0bebab44..9bccba124c8 100644
---- a/src/sage/combinat/symmetric_group_algebra.py
-+++ b/src/sage/combinat/symmetric_group_algebra.py
-@@ -101,7 +101,7 @@ def SymmetricGroupAlgebra(R, W, category=None):
- sage: SGA.group()
- Weyl Group of type ['A', 3] (as a matrix group acting on the ambient space)
- sage: SGA.an_element()
-- s1*s2*s3 + 3*s3*s2 + 2*s3 + 1
-+ s1*s2*s3 + 3*s2*s3*s1*s2 + 2*s3*s1 + 1
-
- The preferred way to construct the symmetric group algebra is to
- go through the usual ``algebra`` method::
-diff --git a/src/sage/env.py b/src/sage/env.py
-index 911f34b1bc6..5f7aca8599c 100644
---- a/src/sage/env.py
-+++ b/src/sage/env.py
-@@ -197,7 +197,8 @@ def var(key: str, *fallbacks: Optional[str], force: bool = False) -> Optional[st
- GRAPHS_DATA_DIR = var("GRAPHS_DATA_DIR", join(SAGE_SHARE, "graphs"))
- ELLCURVE_DATA_DIR = var("ELLCURVE_DATA_DIR", join(SAGE_SHARE, "ellcurves"))
- POLYTOPE_DATA_DIR = var("POLYTOPE_DATA_DIR", join(SAGE_SHARE, "reflexive_polytopes"))
--GAP_ROOT_DIR = var("GAP_ROOT_DIR", join(SAGE_SHARE, "gap"))
-+GAP_LIB_DIR = var("GAP_LIB_DIR", join(SAGE_LOCAL, "lib", "gap"))
-+GAP_SHARE_DIR = var("GAP_SHARE_DIR", join(SAGE_SHARE, "gap"))
- THEBE_DIR = var("THEBE_DIR", join(SAGE_SHARE, "thebe"))
- COMBINATORIAL_DESIGN_DATA_DIR = var("COMBINATORIAL_DESIGN_DATA_DIR", join(SAGE_SHARE, "combinatorial_designs"))
- CREMONA_MINI_DATA_DIR = var("CREMONA_MINI_DATA_DIR", join(SAGE_SHARE, "cremona"))
-@@ -229,12 +230,6 @@ def var(key: str, *fallbacks: Optional[str], force: bool = False) -> Optional[st
- LIE_INFO_DIR = var("LIE_INFO_DIR", join(SAGE_LOCAL, "lib", "LiE"))
- SINGULAR_BIN = var("SINGULAR_BIN") or "Singular"
-
--# The path to libSingular, to be passed to dlopen(). This will
--# typically be set to an absolute path in sage_conf, but the relative
--# fallback path here works on systems where dlopen() searches the
--# system's library locations.
--LIBSINGULAR_PATH = var("LIBSINGULAR_PATH", "libSingular.so")
--
- # OpenMP
- OPENMP_CFLAGS = var("OPENMP_CFLAGS", "")
- OPENMP_CXXFLAGS = var("OPENMP_CXXFLAGS", "")
-@@ -255,81 +250,6 @@ def var(key: str, *fallbacks: Optional[str], force: bool = False) -> Optional[st
- SAGE_GAP_COMMAND = var('SAGE_GAP_COMMAND', _gap_cmd)
-
-
--def _get_shared_lib_path(*libnames: str) -> Optional[str]:
-- """
-- Return the full path to a shared library file installed in
-- ``$SAGE_LOCAL/lib`` or the directories associated with the
-- Python sysconfig.
--
-- This can also be passed more than one library name (e.g. for cases where
-- some library may have multiple names depending on the platform) in which
-- case the first one found is returned.
--
-- This supports most *NIX variants (in which ``lib<libname>.so`` is found
-- under ``$SAGE_LOCAL/lib``), macOS (same, but with the ``.dylib``
-- extension), and Cygwin (under ``$SAGE_LOCAL/bin/cyg<libname>.dll``,
-- or ``$SAGE_LOCAL/bin/cyg<libname>-*.dll`` for versioned DLLs).
--
-- For distributions like Debian that use a multiarch layout, we also try the
-- multiarch lib paths (i.e. ``/usr/lib/<arch>/``).
--
-- This returns ``None`` if no matching library file could be found.
--
-- EXAMPLES::
--
-- sage: from sage.env import _get_shared_lib_path
-- sage: "gap" in _get_shared_lib_path("gap")
-- True
-- sage: _get_shared_lib_path("an_absurd_lib") is None
-- True
--
-- """
--
-- for libname in libnames:
-- search_directories: List[Path] = []
-- patterns: List[str] = []
-- if sys.platform == 'cygwin':
-- # Later down we take the first matching DLL found, so search
-- # SAGE_LOCAL first so that it takes precedence
-- if SAGE_LOCAL:
-- search_directories.append(Path(SAGE_LOCAL) / 'bin')
-- search_directories.append(Path(sysconfig.get_config_var('BINDIR')))
-- # Note: The following is not very robust, since if there are multible
-- # versions for the same library this just selects one more or less
-- # at arbitrary. However, practically speaking, on Cygwin, there
-- # will only ever be one version
-- patterns = [f'cyg{libname}.dll', f'cyg{libname}-*.dll']
-- else:
-- if sys.platform == 'darwin':
-- ext = 'dylib'
-- else:
-- ext = 'so'
--
-- if SAGE_LOCAL:
-- search_directories.append(Path(SAGE_LOCAL) / 'lib')
-- libdir = sysconfig.get_config_var('LIBDIR')
-- if libdir is not None:
-- libdir = Path(libdir)
-- search_directories.append(libdir)
--
-- multiarchlib = sysconfig.get_config_var('MULTIARCH')
-- if multiarchlib is not None:
-- search_directories.append(libdir / multiarchlib),
--
-- patterns = [f'lib{libname}.{ext}']
--
-- for directory in search_directories:
-- for pattern in patterns:
-- path = next(directory.glob(pattern), None)
-- if path is not None:
-- return str(path.resolve())
--
-- # Just return None if no files were found
-- return None
--
--# locate libgap shared object
--GAP_SO = var("GAP_SO", _get_shared_lib_path("gap", ""))
--
- # post process
- if DOT_SAGE is not None and ' ' in DOT_SAGE:
- if UNAME[:6] == 'CYGWIN':
-diff --git a/src/sage/groups/abelian_gps/abelian_group_gap.py b/src/sage/groups/abelian_gps/abelian_group_gap.py
-index a4b047113c5..86090b43535 100644
---- a/src/sage/groups/abelian_gps/abelian_group_gap.py
-+++ b/src/sage/groups/abelian_gps/abelian_group_gap.py
-@@ -338,7 +338,7 @@ def _element_constructor_(self, x, check=True):
- if isinstance(x, AbelianGroupElement_gap):
- try:
- if x in self._cover:
-- x = self.gap().NaturalHomomorphism().Image(x.gap())
-+ x = self._cover.gap().NaturalHomomorphismByNormalSubgroup(self._relations).Image(x.gap())
- else:
- x = x.gap()
- except AttributeError:
-@@ -1043,7 +1043,7 @@ def natural_homomorphism(self):
- From: Abelian group with gap, generator orders (4,)
- To: Quotient abelian group with generator orders (2,)
- """
-- phi = self.gap().NaturalHomomorphism()
-+ phi = self._cover.gap().NaturalHomomorphismByNormalSubgroup(self._relations)
- Hom = self._cover.Hom(self)
- return Hom(phi)
-
-diff --git a/src/sage/groups/finitely_presented.py b/src/sage/groups/finitely_presented.py
-index 8d6e443683c..1beb01af87f 100644
---- a/src/sage/groups/finitely_presented.py
-+++ b/src/sage/groups/finitely_presented.py
-@@ -596,9 +596,9 @@ def gap(self):
- sage: k = G.rewriting_system()
- sage: k.gap()
- Knuth Bendix Rewriting System for Monoid( [ a, A, b, B ] ) with rules
-- [ [ a^2, <identity ...> ], [ a*A, <identity ...> ],
-- [ A*a, <identity ...> ], [ b^2, <identity ...> ],
-- [ b*B, <identity ...> ], [ B*b, <identity ...> ] ]
-+ [ [ a*A, <identity ...> ], [ A*a, <identity ...> ],
-+ [ b*B, <identity ...> ], [ B*b, <identity ...> ],
-+ [ a^2, <identity ...> ], [ b^2, <identity ...> ] ]
- """
- return self._gap
-
-diff --git a/src/sage/groups/fqf_orthogonal.py b/src/sage/groups/fqf_orthogonal.py
-index 7fc4dbe7548..e5eccd45942 100644
---- a/src/sage/groups/fqf_orthogonal.py
-+++ b/src/sage/groups/fqf_orthogonal.py
-@@ -143,7 +143,7 @@ class FqfOrthogonalGroup(AbelianGroupAutomorphismGroup_subgroup):
- [2/3 0 0]
- [ 0 2/3 0]
- [ 0 0 4/3]
-- generated by 2 elements
-+ generated by 3 elements
- sage: q = matrix.diagonal(QQ, [3/2, 1/4, 1/4])
- sage: T = TorsionQuadraticForm(q)
- sage: T.orthogonal_group().order()
-diff --git a/src/sage/groups/libgap_wrapper.pyx b/src/sage/groups/libgap_wrapper.pyx
-index d25121aa792..dc81b71635b 100644
---- a/src/sage/groups/libgap_wrapper.pyx
-+++ b/src/sage/groups/libgap_wrapper.pyx
-@@ -25,7 +25,7 @@ Note how we call the constructor of both superclasses to initialize
- its output via LibGAP::
-
- sage: FooGroup()
-- <pc group of size 3 with 1 generators>
-+ <pc group of size 3 with 1 generator>
- sage: type(FooGroup().gap())
- <class 'sage.libs.gap.element.GapElement'>
-
-@@ -106,7 +106,7 @@ class ParentLibGAP(SageObject):
- ....: ParentLibGAP.__init__(self, lg)
- ....: Group.__init__(self)
- sage: FooGroup()
-- <pc group of size 3 with 1 generators>
-+ <pc group of size 3 with 1 generator>
- """
-
- def __init__(self, libgap_parent, ambient=None):
-@@ -461,7 +461,7 @@ cdef class ElementLibGAP(MultiplicativeGroupElement):
- ....: ParentLibGAP.__init__(self, lg)
- ....: Group.__init__(self)
- sage: FooGroup()
-- <pc group of size 3 with 1 generators>
-+ <pc group of size 3 with 1 generator>
- sage: FooGroup().gens()
- (f1,)
- """
-diff --git a/src/sage/groups/matrix_gps/finitely_generated.py b/src/sage/groups/matrix_gps/finitely_generated.py
-index a6d3dc02513..63956ad5f10 100644
---- a/src/sage/groups/matrix_gps/finitely_generated.py
-+++ b/src/sage/groups/matrix_gps/finitely_generated.py
-@@ -563,9 +563,6 @@ def as_permutation_group(self, algorithm=None, seed=None):
- 21499084800
- sage: P = G.as_permutation_group()
- sage: Psmaller = G.as_permutation_group(algorithm="smaller", seed=6)
-- sage: P == Psmaller # see the note below
-- True
-- sage: Psmaller = G.as_permutation_group(algorithm="smaller")
- sage: P == Psmaller
- False
- sage: P.cardinality()
-diff --git a/src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx b/src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx
-index f2ccca042ac..47d6862333c 100644
---- a/src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx
-+++ b/src/sage/groups/perm_gps/partn_ref2/refinement_generic.pyx
-@@ -427,7 +427,7 @@ cdef class LabelledBranching:
- sage: from sage.groups.perm_gps.partn_ref2.refinement_generic import LabelledBranching
- sage: L = LabelledBranching(3)
- sage: L.small_generating_set()
-- []
-+ [()]
- sage: L.add_gen(libgap.eval('(1,2,3)'))
- sage: L.small_generating_set()
- [(1,2,3)]
-diff --git a/src/sage/groups/perm_gps/permgroup.py b/src/sage/groups/perm_gps/permgroup.py
-index ebdf7c4c6eb..fb14008c8e0 100644
---- a/src/sage/groups/perm_gps/permgroup.py
-+++ b/src/sage/groups/perm_gps/permgroup.py
-@@ -926,7 +926,7 @@ def _coerce_map_from_(self, G):
- sage: f = PG._coerce_map_from_(MG)
- sage: mg = MG.an_element()
- sage: p = f(mg); p
-- (2,33,32,23,31,55)(3,49,38,44,40,28)(4,17,59,62,58,46)(5,21,47,20,43,8)(6,53,50)(7,37,12,57,14,29)(9,41,56,34,64,10)(11,25,19)(13,61,26,51,22,15)(16,45,36)(18,27,35,48,52,54)(24,63,42)(30,39,60)
-+ (1,2,6,19,35,33)(3,9,26,14,31,23)(4,13,5)(7,22,17)(8,24,12)(10,16,32,27,20,28)(11,30,18)(15,25,36,34,29,21)
- sage: PG(p._gap_()) == p
- True
-
-@@ -972,12 +972,12 @@ def _coerce_map_from_(self, G):
- sage: P = G.as_permutation_group(algorithm='smaller', seed=5)
- sage: P1 = G.as_permutation_group()
- sage: P == P1
-- False
-+ True
- sage: g1, g2, g3 = G.gens()
- sage: P(g1*g2)
-- (1,3,7,12)(2,4,8,10)(5,11)(6,9)
-+ (1,4,13,11)(2,5,14,18)(3,15,8,16)(6,7)(9,20,19,12)(10,17)
- sage: P1(g1*g2)
-- (2,29,25,68)(3,57,13,54)(4,11,72,37)(5,39,60,23)(6,64,75,63)(7,21,50,73)(8,46,38,32)(9,74,35,18)(10,44,49,48)(12,16,34,71)(14,79,27,40)(15,26)(17,62,59,76)(19,78,70,65)(20,22,58,51)(24,33,36,43)(28,81,80,52)(30,53,56,69)(31,61)(41,42,67,55)(45,77)(47,66)
-+ (1,4,13,11)(2,5,14,18)(3,15,8,16)(6,7)(9,20,19,12)(10,17)
-
- Another check for :trac:`5583`::
-
-@@ -1302,7 +1302,7 @@ def gens_small(self):
- sage: G.gens_small() # random
- [('b','c'), ('a','c','b')] ## (on 64-bit Linux)
- [('a','b'), ('a','c','b')] ## (on Solaris)
-- sage: len(G.gens_small()) == 2
-+ sage: len(G.gens_small()) == 2 # random
- True
- """
- gens = self._libgap_().SmallGeneratingSet()
-@@ -4370,17 +4370,23 @@ def is_transitive(self, domain=None):
-
- ::
-
-- sage: G = PermutationGroup([[(1,2,3,4,5)],[(1,2)]]) #S_5 on [1..5]
-- sage: G.is_transitive([1,4,5])
-+ sage: G = PermutationGroup([[(1,2,3,4,5)],[(1,2)],[(6,7)]])
-+ sage: G.is_transitive([1,2,3,4,5])
- True
-- sage: G.is_transitive([2..6])
-+ sage: G.is_transitive([1..7])
- False
- sage: G.is_transitive(G.non_fixed_points())
-- True
-+ False
- sage: H = PermutationGroup([[(1,2,3)],[(4,5,6)]])
- sage: H.is_transitive(H.non_fixed_points())
- False
-
-+ If `G` does not act on the domain, it always returns ``False``::
-+
-+ sage: G = PermutationGroup([[(1,2,3,4,5)],[(1,2)]]) #S_5 on [1..5]
-+ sage: G.is_transitive([1,4,5])
-+ False
-+
- Note that this differs from the definition in GAP, where
- ``IsTransitive`` returns whether the group is transitive on the
- set of points moved by the group.
-@@ -4436,12 +4442,16 @@ def is_primitive(self, domain=None):
- sage: G = PermutationGroup([[(1,2,3,4)],[(2,4)]])
- sage: G.is_primitive([1..4])
- False
-- sage: G.is_primitive([1,2,3])
-- True
- sage: G = PermutationGroup([[(3,4,5,6)],[(3,4)]]) #S_4 on [3..6]
- sage: G.is_primitive(G.non_fixed_points())
- True
-
-+ If `G` does not act on the domain, it always returns ``False``::
-+
-+ sage: G = PermutationGroup([[(1,2,3,4)],[(2,4)]])
-+ sage: G.is_primitive([1,2,3])
-+ False
-+
- """
- #If the domain is not a subset of self.domain(), then the
- #action isn't primitive.
-diff --git a/src/sage/interfaces/gap.py b/src/sage/interfaces/gap.py
-index 7ae1792e9de..ecaa9fd2341 100644
---- a/src/sage/interfaces/gap.py
-+++ b/src/sage/interfaces/gap.py
-@@ -1512,6 +1512,8 @@ def gap_reset_workspace(max_workspace_size=None, verbose=False):
- """
- # Create new workspace with filename WORKSPACE
- g = Gap(use_workspace_cache=False, max_workspace_size=None)
-+ g.eval('ColorPrompt(false)')
-+ g.eval('SetUserPreference("UseColorPrompt", false)')
- g.eval('SetUserPreference("HistoryMaxLines", 30)')
- from sage.tests.gap_packages import all_installed_packages
- for pkg in all_installed_packages(gap=g):
-diff --git a/src/sage/interfaces/gap_workspace.py b/src/sage/interfaces/gap_workspace.py
-index 33a87dd5076..03b40be6856 100644
---- a/src/sage/interfaces/gap_workspace.py
-+++ b/src/sage/interfaces/gap_workspace.py
-@@ -16,7 +16,8 @@
- import os
- import time
- import hashlib
--from sage.env import DOT_SAGE, GAP_SO
-+import subprocess
-+from sage.env import DOT_SAGE, HOSTNAME, GAP_LIB_DIR, GAP_SHARE_DIR
-
-
- def gap_workspace_file(system="gap", name="workspace", dir=None):
-@@ -59,11 +60,13 @@ def gap_workspace_file(system="gap", name="workspace", dir=None):
- if dir is None:
- dir = os.path.join(DOT_SAGE, 'gap')
-
-- if GAP_SO:
-- h = hashlib.sha1(GAP_SO.encode('utf-8')).hexdigest()
-- else:
-- h = 'unknown'
-- return os.path.join(dir, '%s-%s-%s' % (system, name, h))
-+ data = f'{GAP_LIB_DIR}:{GAP_SHARE_DIR}'
-+ for path in GAP_LIB_DIR, GAP_SHARE_DIR:
-+ sysinfo = os.path.join(path, "sysinfo.gap")
-+ if os.path.exists(sysinfo):
-+ data += subprocess.getoutput(f'. "{sysinfo}" && echo ":$GAP_VERSION:$GAParch"')
-+ h = hashlib.sha1(data.encode('utf-8')).hexdigest()
-+ return os.path.join(dir, f'{system}-{name}-{HOSTNAME}-{h}')
-
-
- def prepare_workspace_dir(dir=None):
-diff --git a/src/sage/libs/gap/element.pyx b/src/sage/libs/gap/element.pyx
-index c555ea0333c..e3db3934baf 100644
---- a/src/sage/libs/gap/element.pyx
-+++ b/src/sage/libs/gap/element.pyx
-@@ -130,6 +130,7 @@ cdef char *capture_stdout(Obj func, Obj obj):
- """
- cdef Obj s, stream, output_text_string
- cdef UInt res
-+ cdef TypOutputFile output
- # The only way to get a string representation of an object that is truly
- # consistent with how it would be represented at the GAP REPL is to call
- # ViewObj on it. Unfortunately, ViewObj *prints* to the output stream,
-@@ -145,12 +146,12 @@ cdef char *capture_stdout(Obj func, Obj obj):
- output_text_string = GAP_ValueGlobalVariable("OutputTextString")
- stream = CALL_2ARGS(output_text_string, s, GAP_True)
-
-- if not OpenOutputStream(stream):
-+ if not OpenOutputStream(&output, stream):
- raise GAPError("failed to open output capture stream for "
- "representing GAP object")
-
- CALL_1ARGS(func, obj)
-- CloseOutput()
-+ CloseOutput(&output)
- return CSTR_STRING(s)
- finally:
- GAP_Leave()
-diff --git a/src/sage/libs/gap/gap_includes.pxd b/src/sage/libs/gap/gap_includes.pxd
-index 6d22e32540b..6111d18a5c7 100644
---- a/src/sage/libs/gap/gap_includes.pxd
-+++ b/src/sage/libs/gap/gap_includes.pxd
-@@ -76,8 +76,10 @@ cdef extern from "gap/intobj.h" nogil:
-
-
- cdef extern from "gap/io.h" nogil:
-- UInt OpenOutputStream(Obj stream)
-- UInt CloseOutput()
-+ ctypedef struct TypOutputFile:
-+ pass
-+ UInt OpenOutputStream(TypOutputFile* output, Obj stream)
-+ UInt CloseOutput(TypOutputFile* output)
-
-
- cdef extern from "gap/libgap-api.h" nogil:
-diff --git a/src/sage/libs/gap/libgap.pyx b/src/sage/libs/gap/libgap.pyx
-index b1a64e57939..6a36613aa8c 100644
---- a/src/sage/libs/gap/libgap.pyx
-+++ b/src/sage/libs/gap/libgap.pyx
-@@ -695,7 +695,7 @@ class Gap(Parent):
- sage: libgap.List
- <Gap function "List">
- sage: libgap.GlobalRandomSource
-- <RandomSource in IsGlobalRandomSource>
-+ <RandomSource in IsGAPRandomSource>
- """
- if name in dir(self.__class__):
- return getattr(self.__class__, name)
-diff --git a/src/sage/libs/gap/saved_workspace.py b/src/sage/libs/gap/saved_workspace.py
-index ad5adec36d0..7636707f557 100644
---- a/src/sage/libs/gap/saved_workspace.py
-+++ b/src/sage/libs/gap/saved_workspace.py
-@@ -8,7 +8,7 @@
-
- import os
- import glob
--from sage.env import GAP_ROOT_DIR
-+from sage.env import GAP_LIB_DIR
- from sage.interfaces.gap_workspace import gap_workspace_file
-
-
-@@ -31,7 +31,7 @@ def timestamp():
- """
- libgap_dir = os.path.dirname(__file__)
- libgap_files = glob.glob(os.path.join(libgap_dir, '*'))
-- gap_packages = glob.glob(os.path.join(GAP_ROOT_DIR, 'pkg', '*'))
-+ gap_packages = glob.glob(os.path.join(GAP_LIB_DIR, 'pkg', '*'))
- files = libgap_files + gap_packages
- if len(files) == 0:
- print('Unable to find LibGAP files.')
-diff --git a/src/sage/libs/gap/util.pyx b/src/sage/libs/gap/util.pyx
-index 344ab88c42a..eaa659d64c7 100644
---- a/src/sage/libs/gap/util.pyx
-+++ b/src/sage/libs/gap/util.pyx
-@@ -13,7 +13,7 @@ Utility functions for GAP
- #*****************************************************************************
-
- from libc.signal cimport signal, SIGCHLD, SIG_DFL
--from posix.dlfcn cimport dlopen, dlclose, RTLD_NOW, RTLD_GLOBAL
-+from posix.dlfcn cimport dlopen, dlclose, dlerror, RTLD_LAZY, RTLD_GLOBAL
-
- from cpython.exc cimport PyErr_Fetch, PyErr_Restore
- from cpython.object cimport Py_LT, Py_LE, Py_EQ, Py_NE, Py_GT, Py_GE
-@@ -164,33 +164,6 @@ cdef void gasman_callback() with gil:
- ### Initialization of GAP ##################################################
- ############################################################################
-
--def gap_root():
-- """
-- Find the location of the GAP root install which is stored in the gap
-- startup script.
--
-- EXAMPLES::
--
-- sage: from sage.libs.gap.util import gap_root
-- sage: gap_root() # random output
-- '/home/vbraun/opt/sage-5.3.rc0/local/gap/latest'
-- """
-- if os.path.exists(sage.env.GAP_ROOT_DIR):
-- return sage.env.GAP_ROOT_DIR
--
-- # Attempt to figure out the appropriate GAP_ROOT by reading the
-- # local/bin/gap shell script; this is an ugly hack that exists for
-- # historical reasons; the best approach to setting where Sage looks for
-- # the appropriate GAP_ROOT is to set the GAP_ROOT_DIR variable
-- SAGE_LOCAL = sage.env.SAGE_LOCAL
-- with open(os.path.join(SAGE_LOCAL, 'bin', 'gap')) as f:
-- gap_sh = f.read().splitlines()
-- gapdir = next(x for x in gap_sh if x.strip().startswith('GAP_ROOT'))
-- gapdir = gapdir.split('"')[1]
-- gapdir = gapdir.replace('$SAGE_LOCAL', SAGE_LOCAL)
-- return gapdir
--
--
- # To ensure that we call initialize_libgap only once.
- cdef bint _gap_is_initialized = False
-
-@@ -232,12 +205,12 @@ cdef initialize():
- # this isn't portable
-
- cdef void* handle
-- libgapname = str_to_bytes(sage.env.GAP_SO)
-- handle = dlopen(libgapname, RTLD_NOW | RTLD_GLOBAL)
-+ # reload the current module to force reload of libgap (see #33446)
-+ lib = str_to_bytes(__loader__.path, FS_ENCODING, "surrogateescape")
-+ handle = dlopen(lib, RTLD_GLOBAL|RTLD_LAZY)
- if handle is NULL:
-- raise RuntimeError(
-- "Could not dlopen() libgap even though it should already "
-- "be loaded!")
-+ err = dlerror()
-+ raise RuntimeError(f"Could not reload gap library with RTLD_GLOBAL ({err})")
- dlclose(handle)
-
- # Define argv variable, which we will pass in to
-@@ -245,7 +218,7 @@ cdef initialize():
- cdef char* argv[16]
- argv[0] = "sage"
- argv[1] = "-l"
-- s = str_to_bytes(gap_root(), FS_ENCODING, "surrogateescape")
-+ s = str_to_bytes(sage.env.GAP_LIB_DIR + ";" + sage.env.GAP_SHARE_DIR, FS_ENCODING, "surrogateescape")
- argv[2] = s
-
- argv[3] = "-m"
-@@ -362,15 +335,9 @@ cdef Obj gap_eval(str gap_string) except? NULL:
- GAPError: Error, Variable: 'Complex' must have a value
- Syntax error: ; expected in stream:1
- Complex Field with 53 bits of precision;;
-- ^^^^^^^^^^^^
-+ ^^^^^
- Error, Variable: 'with' must have a value
-- Syntax error: ; expected in stream:1
-- Complex Field with 53 bits of precision;;
-- ^^^^^^^^^^^^^^^^^^^^
- Error, Variable: 'bits' must have a value
-- Syntax error: ; expected in stream:1
-- Complex Field with 53 bits of precision;;
-- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
- Error, Variable: 'precision' must have a value
-
- Test that on a subsequent attempt we get the same message (no garbage was
-diff --git a/src/sage/libs/singular/singular.pyx b/src/sage/libs/singular/singular.pyx
-index d8ea7b07f3c..4beb1774df9 100644
---- a/src/sage/libs/singular/singular.pyx
-+++ b/src/sage/libs/singular/singular.pyx
-@@ -1705,14 +1705,7 @@ cdef object si2sa_intvec(intvec *v):
- cdef extern from *: # hack to get at cython macro
- int unlikely(int)
-
--cdef extern from "dlfcn.h":
-- void *dlopen(char *, long)
-- char *dlerror()
-- void dlclose(void *handle)
--
--cdef extern from "dlfcn.h":
-- cdef long RTLD_LAZY
-- cdef long RTLD_GLOBAL
-+from posix.dlfcn cimport dlopen, dlclose, dlerror, RTLD_LAZY, RTLD_GLOBAL
-
- cdef int overflow_check(unsigned long e, ring *_ring) except -1:
- """
-@@ -1762,8 +1755,6 @@ cdef init_libsingular():
-
- cdef void *handle = NULL
-
-- from sage.env import LIBSINGULAR_PATH
-- lib = str_to_bytes(LIBSINGULAR_PATH, FS_ENCODING, "surrogateescape")
-
- # This is a workaround for https://github.com/Singular/Singular/issues/1113
- # and can be removed once that fix makes it into release of Singular that
-@@ -1780,10 +1771,12 @@ cdef init_libsingular():
-
- import platform
- if not platform.system().startswith("CYGWIN"):
-+ # reload the current module to force reload of libSingular (see #33446)
-+ lib = str_to_bytes(__loader__.path, FS_ENCODING, "surrogateescape")
- handle = dlopen(lib, RTLD_GLOBAL|RTLD_LAZY)
- if not handle:
- err = dlerror()
-- raise ImportError(f"cannot load Singular library from {LIBSINGULAR_PATH} ({err})")
-+ raise RuntimeError(f"Could not reload Singular library with RTLD_GLOBAL ({err})")
-
- # load SINGULAR
- siInit(lib)
-diff --git a/src/sage/tests/gap_packages.py b/src/sage/tests/gap_packages.py
-index 2e4518ca226..c302b169b8a 100644
---- a/src/sage/tests/gap_packages.py
-+++ b/src/sage/tests/gap_packages.py
-@@ -103,7 +103,7 @@ def all_installed_packages(ignore_dot_gap=False, gap=None):
-
- sage: from sage.tests.gap_packages import all_installed_packages
- sage: all_installed_packages()
-- (...'GAPDoc'...)
-+ (...'gapdoc'...)
- sage: all_installed_packages(ignore_dot_gap=True) == all_installed_packages(gap=gap, ignore_dot_gap=True)
- True
- """
diff --git a/srcpkgs/sagemath/patches/35127-fix_very_slow_test_stream.py.patch b/srcpkgs/sagemath/patches/35127-fix_very_slow_test_stream.py.patch
deleted file mode 100644
index d331a6573e1c..000000000000
--- a/srcpkgs/sagemath/patches/35127-fix_very_slow_test_stream.py.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-diff --git a/src/sage/data_structures/stream.py b/src/sage/data_structures/stream.py
-index f8f6dc6a186..002e925f02f 100644
---- a/src/sage/data_structures/stream.py
-+++ b/src/sage/data_structures/stream.py
-@@ -2090,8 +2090,8 @@ def compute_product(self, n, la):
- sage: f = Stream_exact([1]) # irrelevant for this test
- sage: g = Stream_function(lambda n: s[n], True, 0)
- sage: h = Stream_plethysm(f, g, True, p)
-- sage: B = p[2, 2, 1](sum(s[i] for i in range(7)))
-- sage: all(h.compute_product(k, Partition([2, 2, 1])) == B.restrict_degree(k) for k in range(7))
-+ sage: B = p[2, 2, 1](sum(p(s[i]) for i in range(7))) # long time
-+ sage: all(h.compute_product(k, Partition([2, 2, 1])) == B.restrict_degree(k) for k in range(7)) # long time
- True
- """
- # This is the approximate order of the result
diff --git a/srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch b/srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch
deleted file mode 100644
index 007f3324cfe4..000000000000
--- a/srcpkgs/sagemath/patches/35177-matplotlib_3.7.patch
+++ /dev/null
@@ -1,95 +0,0 @@
-diff --git a/src/sage/plot/complex_plot.pyx b/src/sage/plot/complex_plot.pyx
-index b77c69b2f77..0586a96ae55 100644
---- a/src/sage/plot/complex_plot.pyx
-+++ b/src/sage/plot/complex_plot.pyx
-@@ -563,7 +563,7 @@ def complex_to_cmap_rgb(z_values, cmap='turbo', contoured=False, tiled=False,
- import matplotlib as mpl
-
- if isinstance(cmap, str):
-- cmap = mpl.cm.get_cmap(cmap)
-+ cmap = mpl.colormaps[cmap]
-
- if contour_base is None:
- if contour_type == "linear":
-@@ -1206,11 +1206,11 @@ def complex_plot(f, x_range, y_range, contoured=False, tiled=False, cmap=None,
- domain = np.linspace(0, 1, 256)
- shifted_domain = np.roll(domain, 128)
- default_cmap = mpl.colors.LinearSegmentedColormap.from_list(
-- "sage_default", mpl.cm.get_cmap('hsv')(shifted_domain)
-+ "sage_default", mpl.colormaps['hsv'](shifted_domain)
- )
- cmap = default_cmap
- else:
-- cmap = mpl.cm.get_cmap(cmap)
-+ cmap = mpl.colormaps[cmap]
- rgbs = complex_to_cmap_rgb(
- z_values, cmap=cmap, contoured=contoured, tiled=tiled,
- contour_type=contour_type, contour_base=contour_base,
-diff --git a/src/sage/plot/contour_plot.py b/src/sage/plot/contour_plot.py
-index c0cab456686..4accb309580 100644
---- a/src/sage/plot/contour_plot.py
-+++ b/src/sage/plot/contour_plot.py
-@@ -848,9 +848,7 @@ def f(x,y): return cos(x) + sin(y)
-
- sage: contour_plot(lambda x,y: 0, (-1,1), (-1,1),
- ....: contours=[0], fill=False, cmap=['blue'])
-- ...
-- UserWarning: No contour levels were found within the data range.
-- Graphics object consisting of 1 graphics primitive
-+ ...Graphics object consisting of 1 graphics primitive
-
- .. PLOT::
-
-@@ -874,8 +872,7 @@ def f(x,y): return cos(x) + sin(y)
- Check that :trac:`18074` is fixed::
-
- sage: contour_plot(0, (0,1), (0,1))
-- ... UserWarning: No contour levels were found within the data range.
-- Graphics object consisting of 1 graphics primitive
-+ ...Graphics object consisting of 1 graphics primitive
-
- Domain points in :trac:`11648` with complex output are now skipped::
-
-diff --git a/src/sage/plot/graphics.py b/src/sage/plot/graphics.py
-index 64ea1a7e10f..cdc99ced263 100644
---- a/src/sage/plot/graphics.py
-+++ b/src/sage/plot/graphics.py
-@@ -2341,7 +2341,7 @@ def _matplotlib_tick_formatter(self, subplot, base=(10, 10),
- sage: subplot = Figure().add_subplot(111)
- sage: p._objects[0]._render_on_subplot(subplot)
- sage: p._matplotlib_tick_formatter(subplot, **d)
-- (<AxesSubplot:...>,
-+ (<Axes...>,
- <matplotlib.ticker.MaxNLocator object at ...>,
- <matplotlib.ticker.MaxNLocator object at ...>,
- <matplotlib.ticker.ScalarFormatter object at ...>,
-diff --git a/src/sage/plot/multigraphics.py b/src/sage/plot/multigraphics.py
-index 99c817f03a6..ae85183dc93 100644
---- a/src/sage/plot/multigraphics.py
-+++ b/src/sage/plot/multigraphics.py
-@@ -1207,7 +1207,7 @@ def _add_subplot(self, figure, index, **options):
- sage: fig = Figure()
- sage: ax1 = G._add_subplot(fig, 0)
- sage: type(ax1)
-- <class 'matplotlib.axes._subplots.AxesSubplot'>
-+ <class 'matplotlib.axes...'>
- sage: ax2 = G._add_subplot(fig, 1)
- sage: fig.get_axes() == [ax1, ax2]
- True
-diff --git a/src/sage/plot/plot3d/plot_field3d.py b/src/sage/plot/plot3d/plot_field3d.py
-index bdf39391d3e..fe10e27f58f 100644
---- a/src/sage/plot/plot3d/plot_field3d.py
-+++ b/src/sage/plot/plot3d/plot_field3d.py
-@@ -126,9 +126,9 @@ def plot_vector_field3d(functions, xrange, yrange, zrange,
- vectors = [vector((ff(*point), gg(*point), hh(*point))) for point in points]
-
- try:
-- from matplotlib.cm import get_cmap
-- cm = get_cmap(colors)
-- except (TypeError, ValueError):
-+ import matplotlib as mpl
-+ cm = mpl.colormaps[colors]
-+ except (TypeError, KeyError):
- cm = None
- if cm is None:
- if isinstance(colors, (list, tuple)):
diff --git a/srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch b/srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch
deleted file mode 100644
index 1e0a708e8068..000000000000
--- a/srcpkgs/sagemath/patches/35195-workaround_ecl_race.patch
+++ /dev/null
@@ -1,56 +0,0 @@
-diff --git a/src/sage/interfaces/maxima_lib.py b/src/sage/interfaces/maxima_lib.py
-index c9ca5e30939..9459cb70334 100644
---- a/src/sage/interfaces/maxima_lib.py
-+++ b/src/sage/interfaces/maxima_lib.py
-@@ -77,6 +77,26 @@
- sage: bar == foo
- True
-
-+TESTS:
-+
-+Check our workaround for a race in ecl works, see :trac:`26968`.
-+We use a temporary `MAXIMA_USERDIR` so it's empty; we place it
-+in `DOT_SAGE` since we expect it to have more latency than `/tmp`.
-+
-+ sage: import tempfile, subprocess
-+ sage: tmpdir = tempfile.TemporaryDirectory(dir=DOT_SAGE)
-+ sage: _ = subprocess.run(['sage', '-c', # long time
-+ ....: f'''
-+ ....: import os
-+ ....: os.environ["MAXIMA_USERDIR"] = "{tmpdir.name}"
-+ ....: if not os.fork():
-+ ....: import sage.interfaces.maxima_lib
-+ ....: else:
-+ ....: import sage.interfaces.maxima_lib
-+ ....: os.wait()
-+ ....: '''])
-+ sage: tmpdir.cleanup()
-+
- """
-
- # ****************************************************************************
-@@ -116,7 +136,23 @@
- ecl_eval("(setq $nolabels t))")
- ecl_eval("(defvar *MAXIMA-LANG-SUBDIR* NIL)")
- ecl_eval("(set-locale-subdir)")
--ecl_eval("(set-pathnames)")
-+
-+try:
-+ ecl_eval("(set-pathnames)")
-+except RuntimeError:
-+ # Recover from :trac:`26968` by creating `*maxima-objdir*` here.
-+ # This cannot be done before calling `(set-pathnames)` since
-+ # `*maxima-objdir*` is computed there.
-+ # We use python `os.makedirs()` which is immune to the race.
-+ # Using `(ensure-directories-exist ...)` in lisp would be
-+ # subject to the same race condition and since `*maxima-objdir*`
-+ # has multiple components this is quite plausible to happen.
-+ maxima_objdir = ecl_eval("*maxima-objdir*").python()[1:-1]
-+ import os
-+ os.makedirs(maxima_objdir, exist_ok=True)
-+ # Call `(set-pathnames)` again to complete its job.
-+ ecl_eval("(set-pathnames)")
-+
- ecl_eval("(defun add-lineinfo (x) x)")
- ecl_eval('(defun principal nil (cond ($noprincipal (diverg)) ((not pcprntd) (merror "Divergent Integral"))))')
- ecl_eval("(remprop 'mfactorial 'grind)") # don't use ! for factorials (#11539)
diff --git a/srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch b/srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch
deleted file mode 100644
index fc3e40da2a88..000000000000
--- a/srcpkgs/sagemath/patches/35204-fix_sage-cleaner.patch
+++ /dev/null
@@ -1,28 +0,0 @@
-diff --git a/src/bin/sage-cleaner b/src/bin/sage-cleaner
-index e2e578eec60..dc7d8f0482e 100755
---- a/src/bin/sage-cleaner
-+++ b/src/bin/sage-cleaner
-@@ -99,6 +99,15 @@ def cleanup():
-
- return len(pid_list)
-
-+def cleanup_cruft():
-+ """ remove directories leftover from improper shutdown """
-+ tmp_dirs = os.listdir(SAGE_TMP_ROOT)
-+ for dir_entry in tmp_dirs:
-+ baddir = os.path.join(SAGE_TMP_ROOT, dir_entry)
-+ if os.path.isdir(baddir):
-+ logger.warning('Removing old directory %s from SAGE_TMP_ROOT', baddir)
-+ rm_rf(baddir)
-+
- def kill_spawned_jobs(jobfile, parent_pid):
- logger.info("Killing %s's spawned jobs", parent_pid)
- killed_them_all = True
-@@ -193,6 +202,7 @@ if __name__ == '__main__':
- setup_daemon()
- fix_old_mistakes()
- logger.info("Starting sage-cleaner with PID %s", os.getpid())
-+ cleanup_cruft()
-
- if len(sys.argv) > 1:
- wait = int(sys.argv[1])
diff --git a/srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch b/srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch
deleted file mode 100644
index ea210e20ae52..000000000000
--- a/srcpkgs/sagemath/patches/35250-nauty_2.8.6.patch
+++ /dev/null
@@ -1,35 +0,0 @@
-diff --git a/src/sage/graphs/generators/families.py b/src/sage/graphs/generators/families.py
-index ec6a5c19e60..9dd7bc1cb1e 100644
---- a/src/sage/graphs/generators/families.py
-+++ b/src/sage/graphs/generators/families.py
-@@ -3660,7 +3660,7 @@ def nauty_gentreeg(options="", debug=False):
-
- sage: gen = graphs.nauty_gentreeg("4", debug=True)
- sage: print(next(gen))
-- >A ...gentreeg Z=2:3 D=3 n=4
-+ >A ...gentreeg ...
- sage: gen = graphs.nauty_gentreeg("4 -q", debug=True)
- sage: next(gen)
- ''
-@@ -3687,7 +3687,7 @@ def nauty_gentreeg(options="", debug=False):
- sage: list(graphs.nauty_gentreeg("3 -x", debug=True))
- ['>E Usage: ...gentreeg [-D#] [-Z#:#] [-ulps] [-q] n [res/mod] ...
- sage: list(graphs.nauty_gentreeg("3", debug=True))
-- ['>A ...gentreeg Z=2:2 D=2 n=3\n', Graph on 3 vertices]
-+ ['>A ...gentreeg ...\n', Graph on 3 vertices]
- """
- import shlex
- from sage.features.nauty import NautyExecutable
-diff --git a/src/sage/graphs/graph_generators.py b/src/sage/graphs/graph_generators.py
-index df88bbe2713..1a8016976c2 100644
---- a/src/sage/graphs/graph_generators.py
-+++ b/src/sage/graphs/graph_generators.py
-@@ -966,7 +966,7 @@ def nauty_geng(self, options="", debug=False):
- ...
- ValueError: wrong format of parameter option
- sage: list(graphs.nauty_geng("-c3", debug=True))
-- ['>E Usage: ...geng [-cCmtfbd#D#] [-uygsnh] [-lvq] ...
-+ ['>E Usage: ...geng ...\n']
- sage: list(graphs.nauty_geng("-c 3", debug=True))
- ['>A ...geng -cd1D2 n=3 e=2-3\n', Graph on 3 vertices, Graph on 3 vertices]
- """
diff --git a/srcpkgs/sagemath/patches/35423-ipython_8.12.patch b/srcpkgs/sagemath/patches/35423-ipython_8.12.patch
deleted file mode 100644
index 46bda084e48e..000000000000
--- a/srcpkgs/sagemath/patches/35423-ipython_8.12.patch
+++ /dev/null
@@ -1,51 +0,0 @@
-diff --git a/src/sage/repl/inputhook.py b/src/sage/repl/inputhook.py
-index da5df0268c0..7f7894f6dcf 100644
---- a/src/sage/repl/inputhook.py
-+++ b/src/sage/repl/inputhook.py
-@@ -17,6 +17,8 @@
-
- import select
- import errno
-+import contextlib
-+import io
-
- from IPython import get_ipython
- from IPython.terminal.pt_inputhooks import register
-@@ -47,15 +49,27 @@ def install():
- """
- Install the Sage input hook
-
-- EXAMPLES::
-+ EXAMPLES:
-+
-+ Make sure ipython is running so we really test this function::
-+
-+ sage: from sage.repl.interpreter import get_test_shell
-+ sage: get_test_shell()
-+ <sage.repl.interpreter.SageTestShell object at ...>
-+
-+ Run the function twice, to check it is idempotent (see :trac:`35235`)::
-
- sage: from sage.repl.inputhook import install
- sage: install()
-+ sage: install()
- """
- ip = get_ipython()
- if not ip:
- return # Not running in ipython, e.g. doctests
-- ip.enable_gui('sage')
-+ if ip._inputhook != sage_inputhook:
-+ # silence `ip.enable_gui()` useless output
-+ with contextlib.redirect_stdout(io.StringIO()):
-+ ip.enable_gui('sage')
-
-
- def uninstall():
-@@ -71,4 +85,6 @@ def uninstall():
- if not ip:
- return
- if ip._inputhook == sage_inputhook:
-- ip.enable_gui(None)
-+ # silence `ip.enable_gui()` useless output
-+ with contextlib.redirect_stdout(io.StringIO()):
-+ ip.enable_gui(None)
diff --git a/srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch b/srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch
deleted file mode 100644
index 2cdc674d4f9e..000000000000
--- a/srcpkgs/sagemath/patches/35438-pythran_0.12.1.patch
+++ /dev/null
@@ -1,41 +0,0 @@
-From 532fbbaf71bb41c73920b584108eb2a09d6deeb1 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
-Date: Tue, 4 Apr 2023 12:56:57 -0300
-Subject: [PATCH] Ignore deprecation warnings triggered by pythran 0.12.1
-
-These happen with python 3.11, setuptools 67.6.1, numpy 1.24.2.
-When pythran 0.12.1 is installed, I get 24 doctest failures due to
-deprecation warnings; they are all gone with this commit.
-
-[backported from 839a6e928c264a9863bd42860c78ae95a6d9f3e0]
----
- src/sage/all.py | 12 ++++++++++--
- 1 file changed, 10 insertions(+), 2 deletions(-)
-
-diff --git a/src/sage/all.py b/src/sage/all.py
-index 93588df1b93..ee775aad0e9 100644
---- a/src/sage/all.py
-+++ b/src/sage/all.py
-@@ -96,9 +96,17 @@ warnings.filterwarnings('ignore', category=DeprecationWarning,
- warnings.filterwarnings('ignore', category=DeprecationWarning,
- module='(.*[.]_vendor[.])?packaging')
-
--# Ignore numpy warnings triggered by pythran
-+# Ignore a few warnings triggered by pythran 0.12.1
- warnings.filterwarnings('ignore', category=DeprecationWarning,
-- module='pythran')
-+ message='\n\n `numpy.distutils` is deprecated since NumPy 1.23.0',
-+ module='pythran.dist')
-+warnings.filterwarnings('ignore', category=DeprecationWarning,
-+ message='pkg_resources is deprecated as an API|'
-+ 'Deprecated call to `pkg_resources.declare_namespace(.*)`',
-+ module='pkg_resources')
-+warnings.filterwarnings('ignore', category=DeprecationWarning,
-+ message='msvccompiler is deprecated and slated to be removed',
-+ module='distutils.msvccompiler')
-
- warnings.filterwarnings('ignore', category=DeprecationWarning,
- message='The distutils(.sysconfig module| package) is deprecated',
---
-2.40.0
-
diff --git a/srcpkgs/sagemath/patches/get_patches b/srcpkgs/sagemath/patches/get_patches
index 871ae38577fd..ab73c494aab2 100755
--- a/srcpkgs/sagemath/patches/get_patches
+++ b/srcpkgs/sagemath/patches/get_patches
@@ -1,7 +1,7 @@
#! /bin/sh
URL_BASE_PR="https://github.com/sagemath/sage/pull/"
-URL_BASE_COMPARE="https://github.com/sagemath/sage/compare/9.8..."
+URL_BASE_COMPARE="https://github.com/sagemath/sage/compare/10.0.rc0..."
case "$1" in
-n) DO=echo ;;
@@ -15,49 +15,8 @@ get_pr() {
$DO wget "$URL_BASE_PR$pr.$ext" -O "$pr-$desc.patch"
}
-get_trac() {
- ticket=$1
- desc=$(echo "$2" | sed -e 's/ /_/g')
- commit=$3
- $DO wget "$URL_BASE_COMPARE$commit.diff" -O "$ticket-$desc-$commit.patch"
-}
-
# run from patches dir
cd $(dirname "$0")
-# merged in 10.0.beta0
-get_trac 34851 "support singular 4.3.1.p3" 5e5737a0c
-get_pr 35068 "fix tests giac 1.9.0.35" patch
-
-# merged in 10.0.beta1
-get_pr 35058 "skip unstable tests klyachko"
-
-# merged in 10.0.beta2
-get_pr 34994 "fix tests numpy 1.24"
-get_pr 34997 "fix edge case of integer_check"
-
-# merged in 10.0.beta3
-get_pr 34995 "support tachyon 0.99.2"
-
-# merged in 10.0.beta4
-get_pr 34980 "avoid factoring in is_prime"
-
-# merged in 10.0.beta5
-get_pr 35094 "support gap 4.12" # includes PR 35093
-
-# merged in 10.0.beta6
-get_pr 35127 "fix very slow test stream.py"
-get_pr 35177 "matplotlib 3.7"
-get_pr 35195 "workaround ecl race"
-get_pr 35204 "fix sage-cleaner"
-
-# merged in 10.0.beta7
-get_pr 35250 "nauty 2.8.6"
-
-# merged in 10.0.beta8
-#get_pr 35337 "ipython 8.11"
-get_pr 35423 "ipython 8.12" # includes PR 35337
-get_pr 35438 "pythran 0.12.1"
-
# needs review
get_pr 35584 "networkx 3.1"
diff --git a/srcpkgs/sagemath/template b/srcpkgs/sagemath/template
index 66a543efd21d..f7687005e0b0 100644
--- a/srcpkgs/sagemath/template
+++ b/srcpkgs/sagemath/template
@@ -1,7 +1,7 @@
# Template file for 'sagemath'
pkgname=sagemath
-version=9.8
-revision=2
+version=10.0.rc0
+revision=1
build_wrksrc=pkgs/sagemath-standard
build_style=python3-module
_bindir=/usr/lib/sagemath/$version/bin
@@ -32,7 +32,7 @@ maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
license="GPL-2.0-or-later"
homepage="http://sagemath.org/"
distfiles="https://github.com/sagemath/sage/archive/refs/tags/$version.tar.gz"
-checksum=2aff28bd1d18c2d526581f5298acb8336f5b92db5675a7403dec8eaf9a86bc4c
+checksum=8e56869d5c14f4bab4d8b0de2e4313b28375c3de35fb3e35e7766e697736eb83
do_configure() {
# git tree needs bootstrapping
next prev parent reply other threads:[~2023-04-29 2:20 UTC|newest]
Thread overview: 41+ messages / expand[flat|nested] mbox.gz Atom feed top
2023-04-28 20:25 [PR PATCH] " tornaria
2023-04-28 20:38 ` icp1994
2023-04-28 20:47 ` tornaria
2023-04-28 22:50 ` tornaria
2023-04-29 1:28 ` tornaria
2023-04-29 2:20 ` tornaria [this message]
2023-05-05 1:46 ` [PR PATCH] [Updated] " tornaria
2023-05-05 1:51 ` [RFC] sagemath: update to 10.0.rc1 tornaria
2023-05-05 12:28 ` tornaria
2023-05-05 19:16 ` [PR PATCH] [Updated] " tornaria
2023-05-06 1:16 ` tornaria
2023-05-06 14:06 ` dkwo
2023-05-06 14:45 ` tornaria
2023-05-09 13:11 ` dkwo
2023-05-10 12:48 ` [PR PATCH] [Updated] " tornaria
2023-05-10 12:55 ` tornaria
2023-05-13 2:33 ` [PR PATCH] [Updated] [RFC] sagemath: update to 10.0.rc2 tornaria
2023-05-13 3:14 ` [PR PATCH] [Updated] [RFC] sagemath: update to 10.0.rc3 tornaria
2023-05-13 18:12 ` dkwo
2023-05-13 22:12 ` [PR PATCH] [Updated] " tornaria
2023-05-15 15:04 ` dkwo
2023-05-15 16:35 ` tornaria
2023-05-15 18:42 ` dkwo
2023-05-15 19:06 ` tornaria
2023-05-15 21:16 ` dkwo
2023-05-15 21:50 ` tornaria
2023-05-16 14:28 ` dkwo
2023-05-16 14:39 ` dkwo
2023-05-18 14:08 ` dkwo
2023-05-21 15:28 ` [PR PATCH] [Updated] " tornaria
2023-05-21 15:32 ` [RFC] sagemath: update to 10.0 tornaria
2023-05-21 18:18 ` [PR PATCH] [Updated] " tornaria
2023-05-21 22:37 ` tornaria
2023-05-21 22:39 ` tornaria
2023-05-21 23:32 ` [PR PATCH] [Updated] " tornaria
2023-05-23 1:19 ` dkwo
2023-05-29 18:09 ` tornaria
2023-05-29 18:53 ` dkwo
2023-05-30 20:52 ` dkwo
2023-05-30 20:52 ` dkwo
2023-05-31 11:18 ` [PR PATCH] [Merged]: " leahneukirchen
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