* Re: [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
@ 2024-07-02 14:41 ` Calandracas606
2024-07-02 14:42 ` Calandracas606
` (10 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: Calandracas606 @ 2024-07-02 14:41 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 400 bytes --]
New comment by Calandracas606 on void-packages repository
https://github.com/void-linux/void-packages/pull/51077#issuecomment-2203403743
Comment:
>
> The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
>
> * DisplayCAL
>
There's a new version available. I'll take a look and see if I can get it working with python 3.12
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
2024-07-02 14:41 ` Calandracas606
@ 2024-07-02 14:42 ` Calandracas606
2024-07-02 14:53 ` Calandracas606
` (9 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: Calandracas606 @ 2024-07-02 14:42 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 395 bytes --]
New comment by Calandracas606 on void-packages repository
https://github.com/void-linux/void-packages/pull/51077#issuecomment-2203403743
Comment:
>
> The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
> * DisplayCAL
>
There's a new version available. I'll take a look and see if I can get it working with python 3.12
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
2024-07-02 14:41 ` Calandracas606
2024-07-02 14:42 ` Calandracas606
@ 2024-07-02 14:53 ` Calandracas606
2024-07-02 14:53 ` Calandracas606
` (8 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: Calandracas606 @ 2024-07-02 14:53 UTC (permalink / raw)
To: ml
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New comment by Calandracas606 on void-packages repository
https://github.com/void-linux/void-packages/pull/51077#issuecomment-2203433193
Comment:
updating DisplayCAL to 3.9.12 should unbreak it with python 3.12
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (2 preceding siblings ...)
2024-07-02 14:53 ` Calandracas606
@ 2024-07-02 14:53 ` Calandracas606
2024-07-02 15:02 ` Calandracas606
` (7 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: Calandracas606 @ 2024-07-02 14:53 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 241 bytes --]
New comment by Calandracas606 on void-packages repository
https://github.com/void-linux/void-packages/pull/51077#issuecomment-2203433193
Comment:
updating DisplayCAL to 3.9.12 should unbreak it with python 3.12
I'll do that in a new PR
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (3 preceding siblings ...)
2024-07-02 14:53 ` Calandracas606
@ 2024-07-02 15:02 ` Calandracas606
2024-07-02 15:46 ` [PR PATCH] [Updated] " ahesford
` (6 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: Calandracas606 @ 2024-07-02 15:02 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 202 bytes --]
New comment by Calandracas606 on void-packages repository
https://github.com/void-linux/void-packages/pull/51077#issuecomment-2203468247
Comment:
https://github.com/eoyilmaz/displaycal-py3/issues/335
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [PR PATCH] [Updated] [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (4 preceding siblings ...)
2024-07-02 15:02 ` Calandracas606
@ 2024-07-02 15:46 ` ahesford
2024-07-02 15:53 ` ahesford
` (5 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: ahesford @ 2024-07-02 15:46 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2360 bytes --]
There is an updated pull request by ahesford against master on the void-packages repository
https://github.com/ahesford/void-packages numpy
https://github.com/void-linux/void-packages/pull/51077
[WIP] NumPy 2.0
This update removes a lot of long-deprecated interfaces and probably breaks several dependants. It will need careful testing.
[ci skip]
The following packages ship shared libraries; most require a rebuild to even be importable, and the rest are included just to be sure (each will be ticked as it is tested for compatibility):
- [ ] gnuradio
- [ ] mypaint
- [ ] opencv
- [ ] plplot
- [x] python3-Bottleneck (a single test failure for memory leaks appears unrelated to NumPy)
- [x] python3-PyOpenGL-accelerate (its only dependant doesn't require NumPy support, so I'll rebuild without support)
- [x] python3-h5py
- [x] python3-matplotlib (basic use seems to work)
- [x] python3-numexpr
- [ ] python3-numpy-stl (several test failures related to closeness tests that aren't quite as close as expected; also, a few interface changes leak into tests)
- [ ] python3-pandas
- [ ] python3-pyFFTW (several test failures, with implications beyond NumPy; needs more investigation)
- [ ] python3-pyopencl
- [x] python3-pywt
- [ ] python3-scikit-image
- [ ] python3-scikit-learn
- [ ] python3-scipy
- [ ] python3-tables
- [ ] python3-vispy
- [ ] urh
- [x] wxPython (doesn't actually depend on NumPy, so it will be rebuilt to correct dependencies)
The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
- DisplayCAL
The following packages do not appear to build Python extensions and should not require a rebuild, but some tests should be performed to ensure basic functionality with NumPy 2.0:
- [ ] bCNC
- [ ] flowblade
- [ ] grass
- [ ] hydrus
- [ ] inkscape
- [ ] openrazer-meta
- [ ] pymol
- [ ] python3-bokeh
- [ ] python3-imageio
- [ ] python3-joblib
- [ ] python3-niapy
- [ ] python3-openai
- [ ] python3-pgzero
- [ ] python3-pycollada
- [ ] python3-pyqtgraph
- [x] python3-pytools
- [ ] python3-seaborn
- [ ] python3-tifffile
- [ ] python3-trimesh
- [x] pythran (compiles python3-scipy and python3-scikit-image just fine)
- [ ] qgis
- [ ] xdot
A patch file from https://github.com/void-linux/void-packages/pull/51077.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-numpy-51077.patch --]
[-- Type: text/x-diff, Size: 33470 bytes --]
From 7bb963e1039cf28b4bffa34bfdc79b97507a011c Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:07:16 -0400
Subject: [PATCH 01/24] python3-numpy: update to 2.0.0.
---
.../patches/fix-pytest-warning.patch | 8 --------
.../patches/version-relaxation.patch | 14 --------------
srcpkgs/python3-numpy/template | 16 ++++++++++++----
3 files changed, 12 insertions(+), 26 deletions(-)
delete mode 100644 srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
delete mode 100644 srcpkgs/python3-numpy/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch b/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
deleted file mode 100644
index 990ab80197542c..00000000000000
--- a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- a/pytest.ini 2023-06-16 22:48:37.211072200 -0300
-+++ b/pytest.ini 2023-06-19 22:52:00.230063231 -0300
-@@ -27,3 +27,5 @@
- ignore:\n\n `numpy.distutils`:DeprecationWarning
- # Ignore mypy >= 0.971 DeprecationWarnings
- ignore:path is deprecated\. Use files\(\) instead:DeprecationWarning:mypy
-+# Ignore warning raised when importing setuptools.command.
-+ ignore:pkg_resources is deprecated as an API:DeprecationWarning
diff --git a/srcpkgs/python3-numpy/patches/version-relaxation.patch b/srcpkgs/python3-numpy/patches/version-relaxation.patch
deleted file mode 100644
index f36972e5cc96a7..00000000000000
--- a/srcpkgs/python3-numpy/patches/version-relaxation.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-As with SciPy, NumPy abuses specifications of *build requirements* as a means
-to control the environment under which wheels are built for distribution.
-
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -2,7 +2,7 @@
- build-backend = "mesonpy"
- requires = [
- "Cython>=0.29.34,<3.1",
-- "meson-python>=0.15.0,<0.16.0",
-+ "meson-python>=0.15.0",
- ]
-
- [project]
diff --git a/srcpkgs/python3-numpy/template b/srcpkgs/python3-numpy/template
index e6b6accb42ab4a..a3be9f760fae2b 100644
--- a/srcpkgs/python3-numpy/template
+++ b/srcpkgs/python3-numpy/template
@@ -1,6 +1,6 @@
# Template file for 'python3-numpy'
pkgname=python3-numpy
-version=1.26.4
+version=2.0.0
revision=1
build_style=python3-pep517
build_helper="meson qemu"
@@ -19,7 +19,7 @@ license="BSD-3-Clause"
homepage="https://www.numpy.org/"
changelog="https://github.com/numpy/numpy/releases"
distfiles="${PYPI_SITE}/n/numpy/numpy-${version}.tar.gz"
-checksum=2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+checksum=cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
alternatives="numpy:f2py:/usr/bin/f2py3"
build_options="openblas"
@@ -77,9 +77,17 @@ do_check() {
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer --destdir "${testdir}" dist/numpy*.whl
+ cd "${testdir}"
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
- python3 runtests.py --no-build -- \
- -n "${XBPS_MAKEJOBS}" ${_skip+-k "not(${_skip#or})"}
+ python3 <<-EOF
+ import numpy
+ numpy.test(
+ extra_argv=[
+ '-n', '${XBPS_MAKEJOBS}',
+ ${_skip+'-k', 'not(${_skip#or})'}
+ ],
+ )
+ EOF
}
post_install() {
From 76ddf3602f2f394182694d5b1b4c4c1df21f9966 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 15:09:53 -0400
Subject: [PATCH 02/24] common/build-helper/numpy.sh: update paths for
python3-numpy-2.0.0
---
common/build-helper/numpy.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/common/build-helper/numpy.sh b/common/build-helper/numpy.sh
index e0856dbca7cf3c..0adce85e151fde 100644
--- a/common/build-helper/numpy.sh
+++ b/common/build-helper/numpy.sh
@@ -19,8 +19,8 @@ fi
# python3-setuptools finds numpy libs and headers on the host first;
# adding search paths up front allows the target to take priority
-CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
-LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/lib"
+CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
+LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/lib"
LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/random/lib"
# distutils from python3-numpy looks to environment variables F77 and
@@ -45,7 +45,7 @@ if [[ "${build_helper}" = *meson* ]]; then
mkdir -p "${XBPS_WRAPPERDIR}/meson"
cat > "${_npy_meson_cross}" <<-EOF
[properties]
- numpy-include-dir = '${_cross_py_site}/numpy/core/include'
+ numpy-include-dir = '${_cross_py_site}/numpy/_core/include'
pythran-include-dir = '${_cross_py_site}/pythran'
EOF
fi
From 3f7ff2b89c1947fb1badc9e57c8599252193b339 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:18:04 -0400
Subject: [PATCH 03/24] gnuradio: rebuild against python3-numpy-2.0.0
---
srcpkgs/gnuradio/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/gnuradio/template b/srcpkgs/gnuradio/template
index 58127cedd3ddc6..0ecf804c22c072 100644
--- a/srcpkgs/gnuradio/template
+++ b/srcpkgs/gnuradio/template
@@ -1,7 +1,7 @@
# Template file for 'gnuradio'
pkgname=gnuradio
version=3.10.8.0
-revision=1
+revision=2
build_style=cmake
conf_files="/etc/gnuradio/conf.d/*"
configure_args="-DMATHJAX2_USE_ROOT=/usr/share/mathjax
From f544f016e269f68fe02fcc6b993e1a0db4863aeb Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:13:46 -0400
Subject: [PATCH 04/24] mypaint: rebuild against python3-numpy-2.0.0
---
srcpkgs/mypaint/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/mypaint/template b/srcpkgs/mypaint/template
index 1a1d995bd7e7cd..d5fdb8d67cf5ca 100644
--- a/srcpkgs/mypaint/template
+++ b/srcpkgs/mypaint/template
@@ -1,7 +1,7 @@
# Template file for 'mypaint'
pkgname=mypaint
version=2.0.1
-revision=5
+revision=6
build_style=python3-module
pycompile_dirs="/usr/share/mypaint"
hostmakedepends="swig pkg-config gettext python3-setuptools python3-numpy python3"
From 4240b954fb84830a2a4d32dc26672cc2505478d1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 05/24] opencv: rebuild against python3-numpy-2.0.0
---
srcpkgs/opencv/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/opencv/template b/srcpkgs/opencv/template
index aea4bfc3a265cf..69e81858de4ba9 100644
--- a/srcpkgs/opencv/template
+++ b/srcpkgs/opencv/template
@@ -1,7 +1,7 @@
# Template file for 'opencv'
pkgname=opencv
version=4.6.0
-revision=6
+revision=7
create_wrksrc=yes
build_wrksrc=${pkgname}-${version}
build_style=cmake
From dd99f4283a1ff21f920d0f4adc0b32cee352ba63 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 06/24] plplot: rebuild against python3-numpy-2.0.0
---
srcpkgs/plplot/template | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/plplot/template b/srcpkgs/plplot/template
index a80e12310e9338..b17eee96f21240 100644
--- a/srcpkgs/plplot/template
+++ b/srcpkgs/plplot/template
@@ -1,11 +1,14 @@
# Template file for 'plplot'
pkgname=plplot
version=5.15.0
-revision=5
+revision=6
build_style=cmake
-build_helper="qemu"
-configure_args="-DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
- -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3"
+build_helper="qemu numpy"
+configure_args="
+ -DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
+ -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3
+ -DCMAKE_C_FLAGS=-I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include
+"
hostmakedepends="pkg-config gcc-fortran swig freefont-ttf
lua53 python3-numpy python3-setuptools plplot-devel"
makedepends="pango-devel cairo-devel freetype-devel libqhull-devel
From c27fe422bf71a2c2cce9f463d2c9ed3a8325dc27 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:07:21 -0400
Subject: [PATCH 07/24] python3-Bottleneck: update to 1.4.0.
---
srcpkgs/python3-Bottleneck/template | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/srcpkgs/python3-Bottleneck/template b/srcpkgs/python3-Bottleneck/template
index afafcd572ddb58..1c9400da55a2ec 100644
--- a/srcpkgs/python3-Bottleneck/template
+++ b/srcpkgs/python3-Bottleneck/template
@@ -1,9 +1,10 @@
# Template file for 'python3-Bottleneck'
pkgname=python3-Bottleneck
-version=1.3.7
+version=1.4.0
revision=1
-build_style=python3-module
-hostmakedepends="python3-setuptools python3-numpy"
+build_style=python3-pep517
+make_check_target=".xbps-testdir/*/${py3_sitelib}/bottleneck/tests"
+hostmakedepends="python3-setuptools python3-versioneer python3-wheel python3-numpy"
makedepends="python3-devel"
depends="python3-numpy"
checkdepends="python3-pytest-xdist $depends"
@@ -11,8 +12,8 @@ short_desc="Fast NumPy array functions written in C (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-2-Clause"
homepage="https://github.com/kwgoodman/bottleneck"
-distfiles="${PYPI_SITE}/B/Bottleneck/Bottleneck-${version}.tar.gz"
-checksum=e1467e373ad469da340ed0ff283214d6531cc08bfdca2083361a3aa6470681f8
+distfiles="${PYPI_SITE}/b/bottleneck/bottleneck-${version}.tar.gz"
+checksum=beb36df519b8709e7d357c0c9639b03b885ca6355bbf5e53752c685de51605b8
post_install() {
rm -f ${DESTDIR}/usr/lib/python*/site-packages/bottleneck/LICENSE
From ef8fc7b0f3d8212ecd896912021af589959cdadd Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:06:53 -0400
Subject: [PATCH 08/24] python3-PyOpenGL-accelerate: rebuild without
python3-numpy
---
srcpkgs/python3-PyOpenGL-accelerate/template | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/srcpkgs/python3-PyOpenGL-accelerate/template b/srcpkgs/python3-PyOpenGL-accelerate/template
index cec8b8c0bc6f4d..2161cd9b433d47 100644
--- a/srcpkgs/python3-PyOpenGL-accelerate/template
+++ b/srcpkgs/python3-PyOpenGL-accelerate/template
@@ -1,11 +1,11 @@
# Template file for 'python3-PyOpenGL-accelerate'
pkgname=python3-PyOpenGL-accelerate
version=3.1.7
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython"
-makedepends="python3-devel python3-numpy"
-depends="python3-numpy"
+makedepends="python3-devel"
+depends="python3"
short_desc="Acceleration code for PyOpenGL (Python3)"
maintainer="Alain Kalker <a.c.kalker@gmail.com>"
license="BSD-3-Clause"
From 4c2640880cab78abcacd933ac673f92ba0e50d1c Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:33:54 -0400
Subject: [PATCH 09/24] python3-h5py: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-h5py/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-h5py/template b/srcpkgs/python3-h5py/template
index e71350fbf60ecb..c77df7c1123719 100644
--- a/srcpkgs/python3-h5py/template
+++ b/srcpkgs/python3-h5py/template
@@ -1,7 +1,7 @@
# Template file for 'python3-h5py'
pkgname=python3-h5py
version=3.11.0
-revision=1
+revision=2
build_style=python3-module
build_helper="numpy"
hostmakedepends="python3-setuptools python3-Cython0.29 python3-pkgconfig"
From 7f77256849180b20a3bdde3b5ec599a9a9942ec1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:56:19 -0400
Subject: [PATCH 10/24] python3-matplotlib: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-matplotlib/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-matplotlib/template b/srcpkgs/python3-matplotlib/template
index 13f9b255ad16ad..3bc99f9f4de763 100644
--- a/srcpkgs/python3-matplotlib/template
+++ b/srcpkgs/python3-matplotlib/template
@@ -1,7 +1,7 @@
# Template file for 'python3-matplotlib'
pkgname=python3-matplotlib
version=3.9.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_build_args="-Csetup-args=-Dsystem-freetype=true
From ae9c1cd613d61f8bc2acd98f4707f9adf18674a6 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 11/24] python3-numexpr: update to 2.10.1.
---
srcpkgs/python3-numexpr/template | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/srcpkgs/python3-numexpr/template b/srcpkgs/python3-numexpr/template
index 4e4b9dc3177840..d148218d101708 100644
--- a/srcpkgs/python3-numexpr/template
+++ b/srcpkgs/python3-numexpr/template
@@ -1,19 +1,20 @@
# Template file for 'python3-numexpr'
pkgname=python3-numexpr
-version=2.8.3
-revision=3
-build_style=python3-module
-build_helper=numpy
-hostmakedepends="python3-wheel"
+version=2.10.1
+revision=1
+build_style=python3-pep517
+build_helper="numpy"
+make_check_args="-k not(test_max_threads_unset)"
+hostmakedepends="python3-setuptools python3-wheel"
makedepends="python3-devel python3-numpy"
-depends="python3-numpy python3-packaging"
-checkdepends="${depends} python3-pytest-xdist"
+depends="python3-numpy"
+checkdepends="${depends} python3-pytest"
short_desc="Fast numerical expression evaluator for NumPy (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="MIT"
homepage="https://github.com/pydata/numexpr"
distfiles="https://github.com/pydata/numexpr/archive/v${version}.tar.gz"
-checksum=389ceefca74eff30ec3fd03fc4c3b7ab3df8f22d1f235117a392ce702ed208c0
+checksum=e499bd19a7fd9803d5ec1b2cff2e0a11a2f01a109d5326e5a09eff590448c793
pre_check() {
python3 setup.py build_ext --inplace
From 68f2730b4eb471b70e1914ed505691dcd0a9bcbb Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 12/24] python3-numpy-stl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-numpy-stl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-numpy-stl/template b/srcpkgs/python3-numpy-stl/template
index 9257dca68817b6..72a7448c990aad 100644
--- a/srcpkgs/python3-numpy-stl/template
+++ b/srcpkgs/python3-numpy-stl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-numpy-stl'
pkgname=python3-numpy-stl
version=2.17.1
-revision=3
+revision=4
build_style=python3-module
build_helper="numpy"
# skip flake8 tests
From 99674d3dd95a22e5921723e5db3797ff61c7323f Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:02 -0400
Subject: [PATCH 13/24] python3-pandas: update to 2.2.2.
---
.../patches/version-relaxation.patch | 24 -------------------
srcpkgs/python3-pandas/template | 10 ++++----
2 files changed, 6 insertions(+), 28 deletions(-)
delete mode 100644 srcpkgs/python3-pandas/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-pandas/patches/version-relaxation.patch b/srcpkgs/python3-pandas/patches/version-relaxation.patch
deleted file mode 100644
index c94e5fa170eebe..00000000000000
--- a/srcpkgs/python3-pandas/patches/version-relaxation.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./pyproject.toml.orig 2023-10-02 14:33:56.359267774 -0400
-+++ ./pyproject.toml 2023-10-02 14:35:29.662565059 -0400
-@@ -2,8 +2,8 @@
- # Minimum requirements for the build system to execute.
- # See https://github.com/scipy/scipy/pull/12940 for the AIX issue.
- requires = [
-- "meson-python==0.13.1",
-- "meson==1.2.1",
-+ "meson-python",
-+ "meson",
- "wheel",
- "Cython>=0.29.33,<3", # Note: sync with setup.py, environment.yml and asv.conf.json
- # Note: numpy 1.25 has a backwards compatible C API by default
---- ./meson.build.orig 2023-10-02 14:42:02.161816469 -0400
-+++ ./meson.build 2023-09-20 15:24:13.000000000 -0400
-@@ -4,7 +4,7 @@
- 'c', 'cpp', 'cython',
- version: run_command(['generate_version.py', '--print'], check: true).stdout().strip(),
- license: 'BSD-3',
-- meson_version: '>=1.2.1',
-+ meson_version: '>=1.2.0',
- default_options: [
- 'buildtype=release',
- 'c_std=c99'
diff --git a/srcpkgs/python3-pandas/template b/srcpkgs/python3-pandas/template
index c8e610dee33729..79e6f8462349cd 100644
--- a/srcpkgs/python3-pandas/template
+++ b/srcpkgs/python3-pandas/template
@@ -1,10 +1,12 @@
# Template file for 'python3-pandas'
pkgname=python3-pandas
-version=2.1.4
-revision=1
+version=2.2.2
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
-hostmakedepends="python3-meson-python python3-wheel python3-Cython0.29
+# Pandas imposes strict and unnecessary restrictions on build dependencies
+make_build_args="--skip-dependency-check"
+hostmakedepends="python3-meson-python python3-wheel python3-Cython
python3-numpy python3-versioneer pkg-config"
makedepends="python3-devel python3-numpy python3-dateutil python3-pytz"
depends="python3-numpy python3-dateutil python3-pytz"
@@ -14,7 +16,7 @@ license="BSD-3-Clause"
homepage="https://pandas.pydata.org/"
changelog="https://pandas.pydata.org/pandas-docs/stable/whatsnew/index.html"
distfiles="https://github.com/pandas-dev/pandas/archive/v${version}.tar.gz"
-checksum=00e0b049bac3d60c5701cae1f2fe57314f6ab8ae302b28953d4f9337817f6fc1
+checksum=79bc6fb5505afd27875c93fec27cece74318470c4e274ec7ef48b16f046dc006
# Builds seem to sometimes have missing symbol problems;
# the intermittent nature suggests this might be a race
disable_parallel_build=yes
From 56216b638b6c1cb9797bba9d51ded7bd2e7a9024 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:15:55 -0400
Subject: [PATCH 14/24] python3-pyFFTW: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyFFTW/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyFFTW/template b/srcpkgs/python3-pyFFTW/template
index ba1f6fc9e158ab..414b77b639ada5 100644
--- a/srcpkgs/python3-pyFFTW/template
+++ b/srcpkgs/python3-pyFFTW/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyFFTW'
pkgname=python3-pyFFTW
version=0.13.1
-revision=2
+revision=3
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="fftw-devel python3-devel"
From 4b5f059213ee47f65725d0280c993e363f0c909b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 15/24] python3-pyopencl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyopencl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyopencl/template b/srcpkgs/python3-pyopencl/template
index f57ba9421ed35a..09320616592f80 100644
--- a/srcpkgs/python3-pyopencl/template
+++ b/srcpkgs/python3-pyopencl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyopencl'
pkgname=python3-pyopencl
version=2024.2.7
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel python3-numpy
python3-scikit-build-core cmake ninja python3-nanobind"
From 019f2a9472e160944bc514e55355ded9d6fea37d Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 16/24] python3-pywt: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pywt/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pywt/template b/srcpkgs/python3-pywt/template
index b4890de4450b45..9930684cedcff0 100644
--- a/srcpkgs/python3-pywt/template
+++ b/srcpkgs/python3-pywt/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pywt'
pkgname=python3-pywt
version=1.6.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_check_target=".xbps-testdir/*/${py3_sitelib}/pywt/tests"
From c27aaf3137cd9749943d70d53f3a1037e04e85df Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 17:03:26 -0400
Subject: [PATCH 17/24] pythran: fix required gast version
---
srcpkgs/pythran/patches/gast-0.6.patch | 76 ++++++++++++++++++++++++++
srcpkgs/pythran/template | 2 +-
2 files changed, 77 insertions(+), 1 deletion(-)
create mode 100644 srcpkgs/pythran/patches/gast-0.6.patch
diff --git a/srcpkgs/pythran/patches/gast-0.6.patch b/srcpkgs/pythran/patches/gast-0.6.patch
new file mode 100644
index 00000000000000..87dfcdcf450bce
--- /dev/null
+++ b/srcpkgs/pythran/patches/gast-0.6.patch
@@ -0,0 +1,76 @@
+From 840a0e706ec39963aec6bcd1f118bf33177c20b4 Mon Sep 17 00:00:00 2001
+From: serge-sans-paille <serge.guelton@telecom-bretagne.eu>
+Date: Sat, 29 Jun 2024 19:13:02 +0200
+Subject: [PATCH] Bump gast requirement to 0.6.0
+
+This mostly helps for harmonious behavior wrt. gast.dump
+---
+ docs/TUTORIAL.rst | 8 ++++----
+ pythran/utils.py | 2 +-
+ requirements.txt | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/docs/TUTORIAL.rst b/docs/TUTORIAL.rst
+index 09f6902f9..7692547eb 100644
+--- a/docs/TUTORIAL.rst
++++ b/docs/TUTORIAL.rst
+@@ -20,7 +20,7 @@ Python ships a standard module, ``ast`` to turn Python code into an AST. For ins
+ >>> code = "a=1"
+ >>> tree = ast.parse(code) # turn the code into an AST
+ >>> print(ast.dump(tree)) # view it as a string
+- Module(body=[Assign(targets=[Name(id='a', ctx=Store(), annotation=None, type_comment=None)], value=Constant(value=1, kind=None), type_comment=None)], type_ignores=[])
++ Module(body=[Assign(targets=[Name(id='a', ctx=Store())], value=Constant(value=1, kind=None))])
+
+ Deciphering the above line, one learns that the single assignment is parsed as
+ a module containing a single statement, which is an assignment to a single
+@@ -33,7 +33,7 @@ Eventually, one needs to parse more complex codes, and things get a bit more cry
+ ... return n if n< 2 else fib(n-1) + fib(n-2)"""
+ >>> tree = ast.parse(fib_src)
+ >>> print(ast.dump(tree))
+- Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param(), annotation=None, type_comment=None)], posonlyargs=[], vararg=None, kwonlyargs=[], kw_defaults=[], kwarg=None, defaults=[]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load(), annotation=None, type_comment=None), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=1, kind=None))], keywords=[]), op=Add(), right=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=2, kind=None))], keywords=[]))))], decorator_list=[], returns=None, type_comment=None)], type_ignores=[])
++ Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param())]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load()), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load()), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=1, kind=None))]), op=Add(), right=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=2, kind=None))]))))])])
+
+ The idea remains the same. The whole Python syntax is described in
+ http://docs.python.org/2/library/ast.html and is worth a glance, otherwise
+@@ -199,7 +199,7 @@ constant expressions. In the previous code, there is only two constant
+
+ >>> ce = pm.gather(analyses.ConstantExpressions, tree)
+ >>> sorted(map(ast.dump, ce))
+- ["Attribute(value=Name(id='math', ctx=Load(), annotation=None, type_comment=None), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
++ ["Attribute(value=Name(id='math', ctx=Load()), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
+
+ One of the most critical analyse of Pythran is the points-to analysis. There
+ are two flavors of this analyse, one that computes an over-set of the aliased
+@@ -210,7 +210,7 @@ variable, and one that computes an under set. ``Aliases`` computes an over-set::
+ >>> al = pm.gather(analyses.Aliases, tree)
+ >>> returned = tree.body[-1].body[-1].value
+ >>> print(ast.dump(returned))
+- Name(id='b', ctx=Load(), annotation=None, type_comment=None)
++ Name(id='b', ctx=Load())
+ >>> sorted(a.id for a in al[returned])
+ ['c', 'd']
+
+diff --git a/pythran/utils.py b/pythran/utils.py
+index 2d7a67327..55a7e8ad6 100644
+--- a/pythran/utils.py
++++ b/pythran/utils.py
+@@ -106,7 +106,7 @@ def get_variable(assignable):
+ ... slice=ast.Name('j', ast.Load(), None, None),
+ ... ctx=ast.Load())
+ >>> ast.dump(get_variable(ref))
+- "Name(id='a', ctx=Load(), annotation=None, type_comment=None)"
++ "Name(id='a', ctx=Load())"
+ """
+ msg = "Only name and subscript can be assigned."
+ assert isinstance(assignable, (ast.Name, ast.Subscript)), msg
+diff --git a/requirements.txt b/requirements.txt
+index fd6a738e5..c7a25c52a 100644
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -1,5 +1,5 @@
+ ply>=3.4
+ setuptools
+-gast~=0.5.0
++gast~=0.6.0
+ numpy
+ beniget~=0.4.0
diff --git a/srcpkgs/pythran/template b/srcpkgs/pythran/template
index a717256074d6d3..9a8761a767f67e 100644
--- a/srcpkgs/pythran/template
+++ b/srcpkgs/pythran/template
@@ -1,7 +1,7 @@
# Template file for 'pythran'
pkgname=pythran
version=0.16.1
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel"
depends="python3-ply python3-gast python3-beniget python3-numpy
From 1d025ec0d68d01fede0cb6c473c1e3d44b6dd506 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 18/24] python3-scikit-image: rebuild against
python3-numpy-2.0.0
---
srcpkgs/python3-scikit-image/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scikit-image/template b/srcpkgs/python3-scikit-image/template
index 144193cd39b330..914aa23ce673f2 100644
--- a/srcpkgs/python3-scikit-image/template
+++ b/srcpkgs/python3-scikit-image/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scikit-image'
pkgname=python3-scikit-image
version=0.24.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
hostmakedepends="python3-build python3-installer python3-meson-python
From 78a18c4756bd081c3081cbde0da91e7eaaf7ff4a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 19/24] python3-scikit-learn: update to 1.5.0.
---
.../python3-scikit-learn/patches/numpy-version.patch | 11 -----------
srcpkgs/python3-scikit-learn/template | 12 ++++++------
2 files changed, 6 insertions(+), 17 deletions(-)
delete mode 100644 srcpkgs/python3-scikit-learn/patches/numpy-version.patch
diff --git a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch b/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
deleted file mode 100644
index 0ffb53e3433e9b..00000000000000
--- a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -9,7 +9,7 @@
- # wheels on PyPI
- #
- # see: https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
-- "oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
-+ "numpy>=1.23.2; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
- # For CPython 3.10 under Windows, SciPy requires NumPy 1.22.3 while the
- # oldest supported NumPy is defined as 1.21.6. We therefore need to force
- # it for this specific configuration. For details, see
diff --git a/srcpkgs/python3-scikit-learn/template b/srcpkgs/python3-scikit-learn/template
index a6364f089c4f4d..f1129c841738fe 100644
--- a/srcpkgs/python3-scikit-learn/template
+++ b/srcpkgs/python3-scikit-learn/template
@@ -1,18 +1,18 @@
# Template file for 'python3-scikit-learn'
pkgname=python3-scikit-learn
-version=1.3.0
-revision=2
+version=1.5.0
+revision=1
build_style=python3-pep517
-hostmakedepends="python3-setuptools python3-Cython python3-numpy python3-scipy
- python3-wheel"
-makedepends="python3-devel libgomp-devel"
+build_helper="numpy meson"
+hostmakedepends="python3-Cython python3-numpy python3-scipy python3-meson-python"
+makedepends="python3-devel python3-numpy libgomp-devel"
depends="python3-numpy python3-scipy python3-joblib python3-threadpoolctl"
short_desc="Python3 modules for machine learning and data mining"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-3-Clause"
homepage="https://scikit-learn.org/"
distfiles="https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz"
-checksum=ead129f466a0859555ce4f41280ae06623ef3255efff0b1692c57f15e39767b5
+checksum=cd2aac2b566c7e740d34aabb4737864c74ba33c29aad7101fbf1bab2931c02dc
make_check=no # tests don't work properly unless package is installed
export SKLEARN_BUILD_PARALLEL="${XBPS_MAKEJOBS}"
From aded2e68a12c146e4da16de2ce079a1fbfbe43f2 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 20/24] python3-scipy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-scipy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scipy/template b/srcpkgs/python3-scipy/template
index 41cf9ddb873aab..e35cd25b4595c6 100644
--- a/srcpkgs/python3-scipy/template
+++ b/srcpkgs/python3-scipy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scipy'
pkgname=python3-scipy
version=1.14.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
# SciPy imposes strict and unnecessary restrictions on build dependencies
From 5b94e94fd441584a81b721a3d7086a746d4b668d Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 21/24] python3-tables: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-tables/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-tables/template b/srcpkgs/python3-tables/template
index 81b7351b972649..38c93292ea4bf8 100644
--- a/srcpkgs/python3-tables/template
+++ b/srcpkgs/python3-tables/template
@@ -1,7 +1,7 @@
# Template file for 'python3-tables'
pkgname=python3-tables
version=3.7.0
-revision=3
+revision=4
build_style=python3-module
build_helper=numpy
# XXX: c-blosc (using internal for now)
From ae27cdbb5ce61154e51116e3e4194c5a87fe3b68 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 22/24] python3-vispy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-vispy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-vispy/template b/srcpkgs/python3-vispy/template
index 60dc8ae4b82996..6411756abc3b71 100644
--- a/srcpkgs/python3-vispy/template
+++ b/srcpkgs/python3-vispy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-vispy'
pkgname=python3-vispy
version=0.6.1
-revision=8
+revision=9
build_style=python3-module
build_helper=numpy
hostmakedepends="python3-setuptools python3-Cython python3-numpy"
From abe8f2ef9084961401838c7e630982732cd6ec8a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 23/24] urh: rebuild against python3-numpy-2.0.0
---
srcpkgs/urh/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/urh/template b/srcpkgs/urh/template
index f86a7ea530c762..7c109b044b1462 100644
--- a/srcpkgs/urh/template
+++ b/srcpkgs/urh/template
@@ -1,7 +1,7 @@
# Template file for 'urh'
pkgname=urh
version=2.9.6
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="python3-devel python3-PyQt5 libairspy-devel librtlsdr-devel
From 8642af397df4ff874b1d1eed32bb91e8a26a07e7 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:08:40 -0400
Subject: [PATCH 24/24] wxPython: fix runtime dependencies
---
srcpkgs/wxPython/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/wxPython/template b/srcpkgs/wxPython/template
index 7f4c8a21e18589..0d29630771a48f 100644
--- a/srcpkgs/wxPython/template
+++ b/srcpkgs/wxPython/template
@@ -1,14 +1,14 @@
# Template file for 'wxPython'
pkgname=wxPython
version=4.2.1
-revision=4
+revision=5
build_style=python3-module
make_build_args="--skip-build"
make_install_args="--skip-build"
hostmakedepends="pkg-config python3-setuptools python3-pathlib2 python3-Cython0.29"
makedepends="python3-devel wxWidgets-gtk3-devel SDL2-devel
gst-plugins-base1-devel"
-depends="python3 python3-six python3-numpy python3-Pillow"
+depends="python3-six"
short_desc="Python bindings for wxWidgets"
maintainer="Orphaned <orphan@voidlinux.org>"
license="custom:wxWindows"
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [PR PATCH] [Updated] [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (5 preceding siblings ...)
2024-07-02 15:46 ` [PR PATCH] [Updated] " ahesford
@ 2024-07-02 15:53 ` ahesford
2024-07-02 15:54 ` ahesford
` (4 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: ahesford @ 2024-07-02 15:53 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2360 bytes --]
There is an updated pull request by ahesford against master on the void-packages repository
https://github.com/ahesford/void-packages numpy
https://github.com/void-linux/void-packages/pull/51077
[WIP] NumPy 2.0
This update removes a lot of long-deprecated interfaces and probably breaks several dependants. It will need careful testing.
[ci skip]
The following packages ship shared libraries; most require a rebuild to even be importable, and the rest are included just to be sure (each will be ticked as it is tested for compatibility):
- [ ] gnuradio
- [ ] mypaint
- [ ] opencv
- [ ] plplot
- [x] python3-Bottleneck (a single test failure for memory leaks appears unrelated to NumPy)
- [x] python3-PyOpenGL-accelerate (its only dependant doesn't require NumPy support, so I'll rebuild without support)
- [x] python3-h5py
- [x] python3-matplotlib (basic use seems to work)
- [x] python3-numexpr
- [ ] python3-numpy-stl (several test failures related to closeness tests that aren't quite as close as expected; also, a few interface changes leak into tests)
- [ ] python3-pandas
- [ ] python3-pyFFTW (several test failures, with implications beyond NumPy; needs more investigation)
- [ ] python3-pyopencl
- [x] python3-pywt
- [ ] python3-scikit-image
- [ ] python3-scikit-learn
- [ ] python3-scipy
- [ ] python3-tables
- [ ] python3-vispy
- [ ] urh
- [x] wxPython (doesn't actually depend on NumPy, so it will be rebuilt to correct dependencies)
The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
- DisplayCAL
The following packages do not appear to build Python extensions and should not require a rebuild, but some tests should be performed to ensure basic functionality with NumPy 2.0:
- [ ] bCNC
- [ ] flowblade
- [ ] grass
- [ ] hydrus
- [ ] inkscape
- [ ] openrazer-meta
- [ ] pymol
- [ ] python3-bokeh
- [ ] python3-imageio
- [ ] python3-joblib
- [ ] python3-niapy
- [ ] python3-openai
- [ ] python3-pgzero
- [ ] python3-pycollada
- [ ] python3-pyqtgraph
- [x] python3-pytools
- [ ] python3-seaborn
- [ ] python3-tifffile
- [ ] python3-trimesh
- [x] pythran (compiles python3-scipy and python3-scikit-image just fine)
- [ ] qgis
- [ ] xdot
A patch file from https://github.com/void-linux/void-packages/pull/51077.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-numpy-51077.patch --]
[-- Type: text/x-diff, Size: 34716 bytes --]
From f7c06a20892015704ac367909df647ec1f212e4c Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:07:16 -0400
Subject: [PATCH 01/24] python3-numpy: update to 2.0.0.
---
.../python3-numpy/files/fenv-constants.patch | 10 +++++-----
.../patches/fix-pytest-warning.patch | 8 --------
.../patches/version-relaxation.patch | 14 --------------
srcpkgs/python3-numpy/template | 18 +++++++++++++-----
4 files changed, 18 insertions(+), 32 deletions(-)
delete mode 100644 srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
delete mode 100644 srcpkgs/python3-numpy/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-numpy/files/fenv-constants.patch b/srcpkgs/python3-numpy/files/fenv-constants.patch
index 987ad4e346ffa5..075cac8a0820c6 100644
--- a/srcpkgs/python3-numpy/files/fenv-constants.patch
+++ b/srcpkgs/python3-numpy/files/fenv-constants.patch
@@ -1,11 +1,11 @@
---- numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:53:51.998825328 +1000
-+++ numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:54:03.611889518 +1000
+--- numpy/_core/src/npymath/ieee754.c.src.orig 2024-07-02 11:50:48.519261116 -0400
++++ numpy/_core/src/npymath/ieee754.c.src 2024-07-02 11:51:06.336360850 -0400
@@ -8,6 +8,8 @@
#include "npy_math_private.h"
#include "numpy/utils.h"
+#include "fenv-constants.h"
+
- #ifndef HAVE_COPYSIGN
- double npy_copysign(double x, double y)
- {
+ /*
+ The below code is provided for compilers which do not yet provide C11 compatibility (gcc 4.5 and older)
+ */
diff --git a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch b/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
deleted file mode 100644
index 990ab80197542c..00000000000000
--- a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- a/pytest.ini 2023-06-16 22:48:37.211072200 -0300
-+++ b/pytest.ini 2023-06-19 22:52:00.230063231 -0300
-@@ -27,3 +27,5 @@
- ignore:\n\n `numpy.distutils`:DeprecationWarning
- # Ignore mypy >= 0.971 DeprecationWarnings
- ignore:path is deprecated\. Use files\(\) instead:DeprecationWarning:mypy
-+# Ignore warning raised when importing setuptools.command.
-+ ignore:pkg_resources is deprecated as an API:DeprecationWarning
diff --git a/srcpkgs/python3-numpy/patches/version-relaxation.patch b/srcpkgs/python3-numpy/patches/version-relaxation.patch
deleted file mode 100644
index f36972e5cc96a7..00000000000000
--- a/srcpkgs/python3-numpy/patches/version-relaxation.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-As with SciPy, NumPy abuses specifications of *build requirements* as a means
-to control the environment under which wheels are built for distribution.
-
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -2,7 +2,7 @@
- build-backend = "mesonpy"
- requires = [
- "Cython>=0.29.34,<3.1",
-- "meson-python>=0.15.0,<0.16.0",
-+ "meson-python>=0.15.0",
- ]
-
- [project]
diff --git a/srcpkgs/python3-numpy/template b/srcpkgs/python3-numpy/template
index e6b6accb42ab4a..fdc2fd3b2560e1 100644
--- a/srcpkgs/python3-numpy/template
+++ b/srcpkgs/python3-numpy/template
@@ -1,6 +1,6 @@
# Template file for 'python3-numpy'
pkgname=python3-numpy
-version=1.26.4
+version=2.0.0
revision=1
build_style=python3-pep517
build_helper="meson qemu"
@@ -19,7 +19,7 @@ license="BSD-3-Clause"
homepage="https://www.numpy.org/"
changelog="https://github.com/numpy/numpy/releases"
distfiles="${PYPI_SITE}/n/numpy/numpy-${version}.tar.gz"
-checksum=2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+checksum=cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
alternatives="numpy:f2py:/usr/bin/f2py3"
build_options="openblas"
@@ -42,7 +42,7 @@ fi
post_patch() {
case "${XBPS_TARGET_MACHINE}" in
armv5tel-musl)
- cp "${FILESDIR}/fenv-constants.h" numpy/core/src/npymath/
+ cp "${FILESDIR}/fenv-constants.h" numpy/_core/src/npymath/
patch -Np0 -i "${FILESDIR}/fenv-constants.patch"
;;
esac
@@ -77,9 +77,17 @@ do_check() {
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer --destdir "${testdir}" dist/numpy*.whl
+ cd "${testdir}"
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
- python3 runtests.py --no-build -- \
- -n "${XBPS_MAKEJOBS}" ${_skip+-k "not(${_skip#or})"}
+ python3 <<-EOF
+ import numpy
+ numpy.test(
+ extra_argv=[
+ '-n', '${XBPS_MAKEJOBS}',
+ ${_skip+'-k', 'not(${_skip#or})'}
+ ],
+ )
+ EOF
}
post_install() {
From c0d308b42ad5ea2de637a00671a9dc4a35ba1136 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 15:09:53 -0400
Subject: [PATCH 02/24] common/build-helper/numpy.sh: update paths for
python3-numpy-2.0.0
---
common/build-helper/numpy.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/common/build-helper/numpy.sh b/common/build-helper/numpy.sh
index e0856dbca7cf3c..0adce85e151fde 100644
--- a/common/build-helper/numpy.sh
+++ b/common/build-helper/numpy.sh
@@ -19,8 +19,8 @@ fi
# python3-setuptools finds numpy libs and headers on the host first;
# adding search paths up front allows the target to take priority
-CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
-LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/lib"
+CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
+LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/lib"
LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/random/lib"
# distutils from python3-numpy looks to environment variables F77 and
@@ -45,7 +45,7 @@ if [[ "${build_helper}" = *meson* ]]; then
mkdir -p "${XBPS_WRAPPERDIR}/meson"
cat > "${_npy_meson_cross}" <<-EOF
[properties]
- numpy-include-dir = '${_cross_py_site}/numpy/core/include'
+ numpy-include-dir = '${_cross_py_site}/numpy/_core/include'
pythran-include-dir = '${_cross_py_site}/pythran'
EOF
fi
From b94e82362382746b7db1cf4bebc269246ab0e851 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:18:04 -0400
Subject: [PATCH 03/24] gnuradio: rebuild against python3-numpy-2.0.0
---
srcpkgs/gnuradio/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/gnuradio/template b/srcpkgs/gnuradio/template
index 58127cedd3ddc6..0ecf804c22c072 100644
--- a/srcpkgs/gnuradio/template
+++ b/srcpkgs/gnuradio/template
@@ -1,7 +1,7 @@
# Template file for 'gnuradio'
pkgname=gnuradio
version=3.10.8.0
-revision=1
+revision=2
build_style=cmake
conf_files="/etc/gnuradio/conf.d/*"
configure_args="-DMATHJAX2_USE_ROOT=/usr/share/mathjax
From 7d6b4aebbb92172db135d0981a9b652825106b6d Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:13:46 -0400
Subject: [PATCH 04/24] mypaint: rebuild against python3-numpy-2.0.0
---
srcpkgs/mypaint/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/mypaint/template b/srcpkgs/mypaint/template
index 1a1d995bd7e7cd..d5fdb8d67cf5ca 100644
--- a/srcpkgs/mypaint/template
+++ b/srcpkgs/mypaint/template
@@ -1,7 +1,7 @@
# Template file for 'mypaint'
pkgname=mypaint
version=2.0.1
-revision=5
+revision=6
build_style=python3-module
pycompile_dirs="/usr/share/mypaint"
hostmakedepends="swig pkg-config gettext python3-setuptools python3-numpy python3"
From 1320b38e0542f9ebcd64be222ac9879c784b7dcd Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 05/24] opencv: rebuild against python3-numpy-2.0.0
---
srcpkgs/opencv/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/opencv/template b/srcpkgs/opencv/template
index aea4bfc3a265cf..69e81858de4ba9 100644
--- a/srcpkgs/opencv/template
+++ b/srcpkgs/opencv/template
@@ -1,7 +1,7 @@
# Template file for 'opencv'
pkgname=opencv
version=4.6.0
-revision=6
+revision=7
create_wrksrc=yes
build_wrksrc=${pkgname}-${version}
build_style=cmake
From 7cb57d05935fadaaf25fb40d1c6af3460ebb93c8 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 06/24] plplot: rebuild against python3-numpy-2.0.0
---
srcpkgs/plplot/template | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/plplot/template b/srcpkgs/plplot/template
index a80e12310e9338..b17eee96f21240 100644
--- a/srcpkgs/plplot/template
+++ b/srcpkgs/plplot/template
@@ -1,11 +1,14 @@
# Template file for 'plplot'
pkgname=plplot
version=5.15.0
-revision=5
+revision=6
build_style=cmake
-build_helper="qemu"
-configure_args="-DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
- -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3"
+build_helper="qemu numpy"
+configure_args="
+ -DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
+ -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3
+ -DCMAKE_C_FLAGS=-I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include
+"
hostmakedepends="pkg-config gcc-fortran swig freefont-ttf
lua53 python3-numpy python3-setuptools plplot-devel"
makedepends="pango-devel cairo-devel freetype-devel libqhull-devel
From aeb439685cae7b1de92b5c40e4e9aaf7349829e4 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:07:21 -0400
Subject: [PATCH 07/24] python3-Bottleneck: update to 1.4.0.
---
srcpkgs/python3-Bottleneck/template | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/srcpkgs/python3-Bottleneck/template b/srcpkgs/python3-Bottleneck/template
index afafcd572ddb58..1c9400da55a2ec 100644
--- a/srcpkgs/python3-Bottleneck/template
+++ b/srcpkgs/python3-Bottleneck/template
@@ -1,9 +1,10 @@
# Template file for 'python3-Bottleneck'
pkgname=python3-Bottleneck
-version=1.3.7
+version=1.4.0
revision=1
-build_style=python3-module
-hostmakedepends="python3-setuptools python3-numpy"
+build_style=python3-pep517
+make_check_target=".xbps-testdir/*/${py3_sitelib}/bottleneck/tests"
+hostmakedepends="python3-setuptools python3-versioneer python3-wheel python3-numpy"
makedepends="python3-devel"
depends="python3-numpy"
checkdepends="python3-pytest-xdist $depends"
@@ -11,8 +12,8 @@ short_desc="Fast NumPy array functions written in C (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-2-Clause"
homepage="https://github.com/kwgoodman/bottleneck"
-distfiles="${PYPI_SITE}/B/Bottleneck/Bottleneck-${version}.tar.gz"
-checksum=e1467e373ad469da340ed0ff283214d6531cc08bfdca2083361a3aa6470681f8
+distfiles="${PYPI_SITE}/b/bottleneck/bottleneck-${version}.tar.gz"
+checksum=beb36df519b8709e7d357c0c9639b03b885ca6355bbf5e53752c685de51605b8
post_install() {
rm -f ${DESTDIR}/usr/lib/python*/site-packages/bottleneck/LICENSE
From 5aa58a8786e58d30a490203c7ebaa5329a492e12 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:06:53 -0400
Subject: [PATCH 08/24] python3-PyOpenGL-accelerate: rebuild without
python3-numpy
---
srcpkgs/python3-PyOpenGL-accelerate/template | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/srcpkgs/python3-PyOpenGL-accelerate/template b/srcpkgs/python3-PyOpenGL-accelerate/template
index cec8b8c0bc6f4d..2161cd9b433d47 100644
--- a/srcpkgs/python3-PyOpenGL-accelerate/template
+++ b/srcpkgs/python3-PyOpenGL-accelerate/template
@@ -1,11 +1,11 @@
# Template file for 'python3-PyOpenGL-accelerate'
pkgname=python3-PyOpenGL-accelerate
version=3.1.7
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython"
-makedepends="python3-devel python3-numpy"
-depends="python3-numpy"
+makedepends="python3-devel"
+depends="python3"
short_desc="Acceleration code for PyOpenGL (Python3)"
maintainer="Alain Kalker <a.c.kalker@gmail.com>"
license="BSD-3-Clause"
From e52085887889343b34d40797e69a6982e44d0643 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:33:54 -0400
Subject: [PATCH 09/24] python3-h5py: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-h5py/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-h5py/template b/srcpkgs/python3-h5py/template
index e71350fbf60ecb..c77df7c1123719 100644
--- a/srcpkgs/python3-h5py/template
+++ b/srcpkgs/python3-h5py/template
@@ -1,7 +1,7 @@
# Template file for 'python3-h5py'
pkgname=python3-h5py
version=3.11.0
-revision=1
+revision=2
build_style=python3-module
build_helper="numpy"
hostmakedepends="python3-setuptools python3-Cython0.29 python3-pkgconfig"
From 2e0e83dcf75bc00fa00286ac8c649b453587eb49 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:56:19 -0400
Subject: [PATCH 10/24] python3-matplotlib: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-matplotlib/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-matplotlib/template b/srcpkgs/python3-matplotlib/template
index 13f9b255ad16ad..3bc99f9f4de763 100644
--- a/srcpkgs/python3-matplotlib/template
+++ b/srcpkgs/python3-matplotlib/template
@@ -1,7 +1,7 @@
# Template file for 'python3-matplotlib'
pkgname=python3-matplotlib
version=3.9.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_build_args="-Csetup-args=-Dsystem-freetype=true
From 1360bb72c9bab10e44308780262f642a1a3d9de1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 11/24] python3-numexpr: update to 2.10.1.
---
srcpkgs/python3-numexpr/template | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/srcpkgs/python3-numexpr/template b/srcpkgs/python3-numexpr/template
index 4e4b9dc3177840..d148218d101708 100644
--- a/srcpkgs/python3-numexpr/template
+++ b/srcpkgs/python3-numexpr/template
@@ -1,19 +1,20 @@
# Template file for 'python3-numexpr'
pkgname=python3-numexpr
-version=2.8.3
-revision=3
-build_style=python3-module
-build_helper=numpy
-hostmakedepends="python3-wheel"
+version=2.10.1
+revision=1
+build_style=python3-pep517
+build_helper="numpy"
+make_check_args="-k not(test_max_threads_unset)"
+hostmakedepends="python3-setuptools python3-wheel"
makedepends="python3-devel python3-numpy"
-depends="python3-numpy python3-packaging"
-checkdepends="${depends} python3-pytest-xdist"
+depends="python3-numpy"
+checkdepends="${depends} python3-pytest"
short_desc="Fast numerical expression evaluator for NumPy (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="MIT"
homepage="https://github.com/pydata/numexpr"
distfiles="https://github.com/pydata/numexpr/archive/v${version}.tar.gz"
-checksum=389ceefca74eff30ec3fd03fc4c3b7ab3df8f22d1f235117a392ce702ed208c0
+checksum=e499bd19a7fd9803d5ec1b2cff2e0a11a2f01a109d5326e5a09eff590448c793
pre_check() {
python3 setup.py build_ext --inplace
From 9c13a3775a64546a0789914fee4d2ad685047791 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 12/24] python3-numpy-stl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-numpy-stl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-numpy-stl/template b/srcpkgs/python3-numpy-stl/template
index 9257dca68817b6..72a7448c990aad 100644
--- a/srcpkgs/python3-numpy-stl/template
+++ b/srcpkgs/python3-numpy-stl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-numpy-stl'
pkgname=python3-numpy-stl
version=2.17.1
-revision=3
+revision=4
build_style=python3-module
build_helper="numpy"
# skip flake8 tests
From d80f72407f77fa8de0e293dfe6ef5e1cea441380 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:02 -0400
Subject: [PATCH 13/24] python3-pandas: update to 2.2.2.
---
.../patches/version-relaxation.patch | 24 -------------------
srcpkgs/python3-pandas/template | 10 ++++----
2 files changed, 6 insertions(+), 28 deletions(-)
delete mode 100644 srcpkgs/python3-pandas/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-pandas/patches/version-relaxation.patch b/srcpkgs/python3-pandas/patches/version-relaxation.patch
deleted file mode 100644
index c94e5fa170eebe..00000000000000
--- a/srcpkgs/python3-pandas/patches/version-relaxation.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./pyproject.toml.orig 2023-10-02 14:33:56.359267774 -0400
-+++ ./pyproject.toml 2023-10-02 14:35:29.662565059 -0400
-@@ -2,8 +2,8 @@
- # Minimum requirements for the build system to execute.
- # See https://github.com/scipy/scipy/pull/12940 for the AIX issue.
- requires = [
-- "meson-python==0.13.1",
-- "meson==1.2.1",
-+ "meson-python",
-+ "meson",
- "wheel",
- "Cython>=0.29.33,<3", # Note: sync with setup.py, environment.yml and asv.conf.json
- # Note: numpy 1.25 has a backwards compatible C API by default
---- ./meson.build.orig 2023-10-02 14:42:02.161816469 -0400
-+++ ./meson.build 2023-09-20 15:24:13.000000000 -0400
-@@ -4,7 +4,7 @@
- 'c', 'cpp', 'cython',
- version: run_command(['generate_version.py', '--print'], check: true).stdout().strip(),
- license: 'BSD-3',
-- meson_version: '>=1.2.1',
-+ meson_version: '>=1.2.0',
- default_options: [
- 'buildtype=release',
- 'c_std=c99'
diff --git a/srcpkgs/python3-pandas/template b/srcpkgs/python3-pandas/template
index c8e610dee33729..79e6f8462349cd 100644
--- a/srcpkgs/python3-pandas/template
+++ b/srcpkgs/python3-pandas/template
@@ -1,10 +1,12 @@
# Template file for 'python3-pandas'
pkgname=python3-pandas
-version=2.1.4
-revision=1
+version=2.2.2
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
-hostmakedepends="python3-meson-python python3-wheel python3-Cython0.29
+# Pandas imposes strict and unnecessary restrictions on build dependencies
+make_build_args="--skip-dependency-check"
+hostmakedepends="python3-meson-python python3-wheel python3-Cython
python3-numpy python3-versioneer pkg-config"
makedepends="python3-devel python3-numpy python3-dateutil python3-pytz"
depends="python3-numpy python3-dateutil python3-pytz"
@@ -14,7 +16,7 @@ license="BSD-3-Clause"
homepage="https://pandas.pydata.org/"
changelog="https://pandas.pydata.org/pandas-docs/stable/whatsnew/index.html"
distfiles="https://github.com/pandas-dev/pandas/archive/v${version}.tar.gz"
-checksum=00e0b049bac3d60c5701cae1f2fe57314f6ab8ae302b28953d4f9337817f6fc1
+checksum=79bc6fb5505afd27875c93fec27cece74318470c4e274ec7ef48b16f046dc006
# Builds seem to sometimes have missing symbol problems;
# the intermittent nature suggests this might be a race
disable_parallel_build=yes
From 7cf2d29649d229e5eb2fcc78947dcd7607272e81 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:15:55 -0400
Subject: [PATCH 14/24] python3-pyFFTW: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyFFTW/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyFFTW/template b/srcpkgs/python3-pyFFTW/template
index ba1f6fc9e158ab..414b77b639ada5 100644
--- a/srcpkgs/python3-pyFFTW/template
+++ b/srcpkgs/python3-pyFFTW/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyFFTW'
pkgname=python3-pyFFTW
version=0.13.1
-revision=2
+revision=3
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="fftw-devel python3-devel"
From 7167b924f62f98030bbc8a9e45bc4cb0f2b15150 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 15/24] python3-pyopencl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyopencl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyopencl/template b/srcpkgs/python3-pyopencl/template
index f57ba9421ed35a..09320616592f80 100644
--- a/srcpkgs/python3-pyopencl/template
+++ b/srcpkgs/python3-pyopencl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyopencl'
pkgname=python3-pyopencl
version=2024.2.7
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel python3-numpy
python3-scikit-build-core cmake ninja python3-nanobind"
From bf920ec3504ff605388e330bb926beb12f9a56bf Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 16/24] python3-pywt: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pywt/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pywt/template b/srcpkgs/python3-pywt/template
index b4890de4450b45..9930684cedcff0 100644
--- a/srcpkgs/python3-pywt/template
+++ b/srcpkgs/python3-pywt/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pywt'
pkgname=python3-pywt
version=1.6.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_check_target=".xbps-testdir/*/${py3_sitelib}/pywt/tests"
From dab90c4177870ea1396446e6b13feb2edfe2f233 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 17:03:26 -0400
Subject: [PATCH 17/24] pythran: fix required gast version
---
srcpkgs/pythran/patches/gast-0.6.patch | 76 ++++++++++++++++++++++++++
srcpkgs/pythran/template | 2 +-
2 files changed, 77 insertions(+), 1 deletion(-)
create mode 100644 srcpkgs/pythran/patches/gast-0.6.patch
diff --git a/srcpkgs/pythran/patches/gast-0.6.patch b/srcpkgs/pythran/patches/gast-0.6.patch
new file mode 100644
index 00000000000000..87dfcdcf450bce
--- /dev/null
+++ b/srcpkgs/pythran/patches/gast-0.6.patch
@@ -0,0 +1,76 @@
+From 840a0e706ec39963aec6bcd1f118bf33177c20b4 Mon Sep 17 00:00:00 2001
+From: serge-sans-paille <serge.guelton@telecom-bretagne.eu>
+Date: Sat, 29 Jun 2024 19:13:02 +0200
+Subject: [PATCH] Bump gast requirement to 0.6.0
+
+This mostly helps for harmonious behavior wrt. gast.dump
+---
+ docs/TUTORIAL.rst | 8 ++++----
+ pythran/utils.py | 2 +-
+ requirements.txt | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/docs/TUTORIAL.rst b/docs/TUTORIAL.rst
+index 09f6902f9..7692547eb 100644
+--- a/docs/TUTORIAL.rst
++++ b/docs/TUTORIAL.rst
+@@ -20,7 +20,7 @@ Python ships a standard module, ``ast`` to turn Python code into an AST. For ins
+ >>> code = "a=1"
+ >>> tree = ast.parse(code) # turn the code into an AST
+ >>> print(ast.dump(tree)) # view it as a string
+- Module(body=[Assign(targets=[Name(id='a', ctx=Store(), annotation=None, type_comment=None)], value=Constant(value=1, kind=None), type_comment=None)], type_ignores=[])
++ Module(body=[Assign(targets=[Name(id='a', ctx=Store())], value=Constant(value=1, kind=None))])
+
+ Deciphering the above line, one learns that the single assignment is parsed as
+ a module containing a single statement, which is an assignment to a single
+@@ -33,7 +33,7 @@ Eventually, one needs to parse more complex codes, and things get a bit more cry
+ ... return n if n< 2 else fib(n-1) + fib(n-2)"""
+ >>> tree = ast.parse(fib_src)
+ >>> print(ast.dump(tree))
+- Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param(), annotation=None, type_comment=None)], posonlyargs=[], vararg=None, kwonlyargs=[], kw_defaults=[], kwarg=None, defaults=[]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load(), annotation=None, type_comment=None), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=1, kind=None))], keywords=[]), op=Add(), right=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=2, kind=None))], keywords=[]))))], decorator_list=[], returns=None, type_comment=None)], type_ignores=[])
++ Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param())]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load()), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load()), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=1, kind=None))]), op=Add(), right=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=2, kind=None))]))))])])
+
+ The idea remains the same. The whole Python syntax is described in
+ http://docs.python.org/2/library/ast.html and is worth a glance, otherwise
+@@ -199,7 +199,7 @@ constant expressions. In the previous code, there is only two constant
+
+ >>> ce = pm.gather(analyses.ConstantExpressions, tree)
+ >>> sorted(map(ast.dump, ce))
+- ["Attribute(value=Name(id='math', ctx=Load(), annotation=None, type_comment=None), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
++ ["Attribute(value=Name(id='math', ctx=Load()), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
+
+ One of the most critical analyse of Pythran is the points-to analysis. There
+ are two flavors of this analyse, one that computes an over-set of the aliased
+@@ -210,7 +210,7 @@ variable, and one that computes an under set. ``Aliases`` computes an over-set::
+ >>> al = pm.gather(analyses.Aliases, tree)
+ >>> returned = tree.body[-1].body[-1].value
+ >>> print(ast.dump(returned))
+- Name(id='b', ctx=Load(), annotation=None, type_comment=None)
++ Name(id='b', ctx=Load())
+ >>> sorted(a.id for a in al[returned])
+ ['c', 'd']
+
+diff --git a/pythran/utils.py b/pythran/utils.py
+index 2d7a67327..55a7e8ad6 100644
+--- a/pythran/utils.py
++++ b/pythran/utils.py
+@@ -106,7 +106,7 @@ def get_variable(assignable):
+ ... slice=ast.Name('j', ast.Load(), None, None),
+ ... ctx=ast.Load())
+ >>> ast.dump(get_variable(ref))
+- "Name(id='a', ctx=Load(), annotation=None, type_comment=None)"
++ "Name(id='a', ctx=Load())"
+ """
+ msg = "Only name and subscript can be assigned."
+ assert isinstance(assignable, (ast.Name, ast.Subscript)), msg
+diff --git a/requirements.txt b/requirements.txt
+index fd6a738e5..c7a25c52a 100644
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -1,5 +1,5 @@
+ ply>=3.4
+ setuptools
+-gast~=0.5.0
++gast~=0.6.0
+ numpy
+ beniget~=0.4.0
diff --git a/srcpkgs/pythran/template b/srcpkgs/pythran/template
index a717256074d6d3..9a8761a767f67e 100644
--- a/srcpkgs/pythran/template
+++ b/srcpkgs/pythran/template
@@ -1,7 +1,7 @@
# Template file for 'pythran'
pkgname=pythran
version=0.16.1
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel"
depends="python3-ply python3-gast python3-beniget python3-numpy
From 9972e121edb57cfecd742ff5066e016f71fa7c83 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 18/24] python3-scikit-image: rebuild against
python3-numpy-2.0.0
---
srcpkgs/python3-scikit-image/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scikit-image/template b/srcpkgs/python3-scikit-image/template
index 144193cd39b330..914aa23ce673f2 100644
--- a/srcpkgs/python3-scikit-image/template
+++ b/srcpkgs/python3-scikit-image/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scikit-image'
pkgname=python3-scikit-image
version=0.24.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
hostmakedepends="python3-build python3-installer python3-meson-python
From 09c3c26532e789c2756ffa0322230c77e4c62380 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 19/24] python3-scikit-learn: update to 1.5.0.
---
.../python3-scikit-learn/patches/numpy-version.patch | 11 -----------
srcpkgs/python3-scikit-learn/template | 12 ++++++------
2 files changed, 6 insertions(+), 17 deletions(-)
delete mode 100644 srcpkgs/python3-scikit-learn/patches/numpy-version.patch
diff --git a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch b/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
deleted file mode 100644
index 0ffb53e3433e9b..00000000000000
--- a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -9,7 +9,7 @@
- # wheels on PyPI
- #
- # see: https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
-- "oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
-+ "numpy>=1.23.2; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
- # For CPython 3.10 under Windows, SciPy requires NumPy 1.22.3 while the
- # oldest supported NumPy is defined as 1.21.6. We therefore need to force
- # it for this specific configuration. For details, see
diff --git a/srcpkgs/python3-scikit-learn/template b/srcpkgs/python3-scikit-learn/template
index a6364f089c4f4d..f1129c841738fe 100644
--- a/srcpkgs/python3-scikit-learn/template
+++ b/srcpkgs/python3-scikit-learn/template
@@ -1,18 +1,18 @@
# Template file for 'python3-scikit-learn'
pkgname=python3-scikit-learn
-version=1.3.0
-revision=2
+version=1.5.0
+revision=1
build_style=python3-pep517
-hostmakedepends="python3-setuptools python3-Cython python3-numpy python3-scipy
- python3-wheel"
-makedepends="python3-devel libgomp-devel"
+build_helper="numpy meson"
+hostmakedepends="python3-Cython python3-numpy python3-scipy python3-meson-python"
+makedepends="python3-devel python3-numpy libgomp-devel"
depends="python3-numpy python3-scipy python3-joblib python3-threadpoolctl"
short_desc="Python3 modules for machine learning and data mining"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-3-Clause"
homepage="https://scikit-learn.org/"
distfiles="https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz"
-checksum=ead129f466a0859555ce4f41280ae06623ef3255efff0b1692c57f15e39767b5
+checksum=cd2aac2b566c7e740d34aabb4737864c74ba33c29aad7101fbf1bab2931c02dc
make_check=no # tests don't work properly unless package is installed
export SKLEARN_BUILD_PARALLEL="${XBPS_MAKEJOBS}"
From 514c6dc6b0f46aa2791e9f73be2934d2077643d8 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 20/24] python3-scipy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-scipy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scipy/template b/srcpkgs/python3-scipy/template
index 41cf9ddb873aab..e35cd25b4595c6 100644
--- a/srcpkgs/python3-scipy/template
+++ b/srcpkgs/python3-scipy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scipy'
pkgname=python3-scipy
version=1.14.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
# SciPy imposes strict and unnecessary restrictions on build dependencies
From 7b3ce12638a9cb7956f1c2e8a04c7f064f29061c Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 21/24] python3-tables: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-tables/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-tables/template b/srcpkgs/python3-tables/template
index 81b7351b972649..38c93292ea4bf8 100644
--- a/srcpkgs/python3-tables/template
+++ b/srcpkgs/python3-tables/template
@@ -1,7 +1,7 @@
# Template file for 'python3-tables'
pkgname=python3-tables
version=3.7.0
-revision=3
+revision=4
build_style=python3-module
build_helper=numpy
# XXX: c-blosc (using internal for now)
From cef2ccc2f2c6e3690c9da29a7586c537867bc922 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 22/24] python3-vispy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-vispy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-vispy/template b/srcpkgs/python3-vispy/template
index 60dc8ae4b82996..6411756abc3b71 100644
--- a/srcpkgs/python3-vispy/template
+++ b/srcpkgs/python3-vispy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-vispy'
pkgname=python3-vispy
version=0.6.1
-revision=8
+revision=9
build_style=python3-module
build_helper=numpy
hostmakedepends="python3-setuptools python3-Cython python3-numpy"
From 9013e15e34b992dc6dfa1aec654ef25777d67460 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 23/24] urh: rebuild against python3-numpy-2.0.0
---
srcpkgs/urh/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/urh/template b/srcpkgs/urh/template
index f86a7ea530c762..7c109b044b1462 100644
--- a/srcpkgs/urh/template
+++ b/srcpkgs/urh/template
@@ -1,7 +1,7 @@
# Template file for 'urh'
pkgname=urh
version=2.9.6
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="python3-devel python3-PyQt5 libairspy-devel librtlsdr-devel
From c970454d3b6d5b26ee547619584e5a7d99bbdebe Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:08:40 -0400
Subject: [PATCH 24/24] wxPython: fix runtime dependencies
---
srcpkgs/wxPython/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/wxPython/template b/srcpkgs/wxPython/template
index 7f4c8a21e18589..0d29630771a48f 100644
--- a/srcpkgs/wxPython/template
+++ b/srcpkgs/wxPython/template
@@ -1,14 +1,14 @@
# Template file for 'wxPython'
pkgname=wxPython
version=4.2.1
-revision=4
+revision=5
build_style=python3-module
make_build_args="--skip-build"
make_install_args="--skip-build"
hostmakedepends="pkg-config python3-setuptools python3-pathlib2 python3-Cython0.29"
makedepends="python3-devel wxWidgets-gtk3-devel SDL2-devel
gst-plugins-base1-devel"
-depends="python3 python3-six python3-numpy python3-Pillow"
+depends="python3-six"
short_desc="Python bindings for wxWidgets"
maintainer="Orphaned <orphan@voidlinux.org>"
license="custom:wxWindows"
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [PR PATCH] [Updated] [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (6 preceding siblings ...)
2024-07-02 15:53 ` ahesford
@ 2024-07-02 15:54 ` ahesford
2024-07-02 18:11 ` ahesford
` (3 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: ahesford @ 2024-07-02 15:54 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2360 bytes --]
There is an updated pull request by ahesford against master on the void-packages repository
https://github.com/ahesford/void-packages numpy
https://github.com/void-linux/void-packages/pull/51077
[WIP] NumPy 2.0
This update removes a lot of long-deprecated interfaces and probably breaks several dependants. It will need careful testing.
[ci skip]
The following packages ship shared libraries; most require a rebuild to even be importable, and the rest are included just to be sure (each will be ticked as it is tested for compatibility):
- [ ] gnuradio
- [ ] mypaint
- [ ] opencv
- [ ] plplot
- [x] python3-Bottleneck (a single test failure for memory leaks appears unrelated to NumPy)
- [x] python3-PyOpenGL-accelerate (its only dependant doesn't require NumPy support, so I'll rebuild without support)
- [x] python3-h5py
- [x] python3-matplotlib (basic use seems to work)
- [x] python3-numexpr
- [ ] python3-numpy-stl (several test failures related to closeness tests that aren't quite as close as expected; also, a few interface changes leak into tests)
- [ ] python3-pandas
- [ ] python3-pyFFTW (several test failures, with implications beyond NumPy; needs more investigation)
- [ ] python3-pyopencl
- [x] python3-pywt
- [ ] python3-scikit-image
- [ ] python3-scikit-learn
- [ ] python3-scipy
- [ ] python3-tables
- [ ] python3-vispy
- [ ] urh
- [x] wxPython (doesn't actually depend on NumPy, so it will be rebuilt to correct dependencies)
The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
- DisplayCAL
The following packages do not appear to build Python extensions and should not require a rebuild, but some tests should be performed to ensure basic functionality with NumPy 2.0:
- [ ] bCNC
- [ ] flowblade
- [ ] grass
- [ ] hydrus
- [ ] inkscape
- [ ] openrazer-meta
- [ ] pymol
- [ ] python3-bokeh
- [ ] python3-imageio
- [ ] python3-joblib
- [ ] python3-niapy
- [ ] python3-openai
- [ ] python3-pgzero
- [ ] python3-pycollada
- [ ] python3-pyqtgraph
- [x] python3-pytools
- [ ] python3-seaborn
- [ ] python3-tifffile
- [ ] python3-trimesh
- [x] pythran (compiles python3-scipy and python3-scikit-image just fine)
- [ ] qgis
- [ ] xdot
A patch file from https://github.com/void-linux/void-packages/pull/51077.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-numpy-51077.patch --]
[-- Type: text/x-diff, Size: 34837 bytes --]
From 1b520369f80a8f63d02cabbf0bcff74424e35483 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:07:16 -0400
Subject: [PATCH 01/24] python3-numpy: update to 2.0.0.
---
.../python3-numpy/files/fenv-constants.patch | 10 ++++-----
.../patches/fix-pytest-warning.patch | 8 -------
.../patches/version-relaxation.patch | 14 ------------
srcpkgs/python3-numpy/template | 22 +++++++++++--------
4 files changed, 18 insertions(+), 36 deletions(-)
delete mode 100644 srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
delete mode 100644 srcpkgs/python3-numpy/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-numpy/files/fenv-constants.patch b/srcpkgs/python3-numpy/files/fenv-constants.patch
index 987ad4e346ffa5..075cac8a0820c6 100644
--- a/srcpkgs/python3-numpy/files/fenv-constants.patch
+++ b/srcpkgs/python3-numpy/files/fenv-constants.patch
@@ -1,11 +1,11 @@
---- numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:53:51.998825328 +1000
-+++ numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:54:03.611889518 +1000
+--- numpy/_core/src/npymath/ieee754.c.src.orig 2024-07-02 11:50:48.519261116 -0400
++++ numpy/_core/src/npymath/ieee754.c.src 2024-07-02 11:51:06.336360850 -0400
@@ -8,6 +8,8 @@
#include "npy_math_private.h"
#include "numpy/utils.h"
+#include "fenv-constants.h"
+
- #ifndef HAVE_COPYSIGN
- double npy_copysign(double x, double y)
- {
+ /*
+ The below code is provided for compilers which do not yet provide C11 compatibility (gcc 4.5 and older)
+ */
diff --git a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch b/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
deleted file mode 100644
index 990ab80197542c..00000000000000
--- a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- a/pytest.ini 2023-06-16 22:48:37.211072200 -0300
-+++ b/pytest.ini 2023-06-19 22:52:00.230063231 -0300
-@@ -27,3 +27,5 @@
- ignore:\n\n `numpy.distutils`:DeprecationWarning
- # Ignore mypy >= 0.971 DeprecationWarnings
- ignore:path is deprecated\. Use files\(\) instead:DeprecationWarning:mypy
-+# Ignore warning raised when importing setuptools.command.
-+ ignore:pkg_resources is deprecated as an API:DeprecationWarning
diff --git a/srcpkgs/python3-numpy/patches/version-relaxation.patch b/srcpkgs/python3-numpy/patches/version-relaxation.patch
deleted file mode 100644
index f36972e5cc96a7..00000000000000
--- a/srcpkgs/python3-numpy/patches/version-relaxation.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-As with SciPy, NumPy abuses specifications of *build requirements* as a means
-to control the environment under which wheels are built for distribution.
-
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -2,7 +2,7 @@
- build-backend = "mesonpy"
- requires = [
- "Cython>=0.29.34,<3.1",
-- "meson-python>=0.15.0,<0.16.0",
-+ "meson-python>=0.15.0",
- ]
-
- [project]
diff --git a/srcpkgs/python3-numpy/template b/srcpkgs/python3-numpy/template
index e6b6accb42ab4a..2adde47160b768 100644
--- a/srcpkgs/python3-numpy/template
+++ b/srcpkgs/python3-numpy/template
@@ -1,6 +1,6 @@
# Template file for 'python3-numpy'
pkgname=python3-numpy
-version=1.26.4
+version=2.0.0
revision=1
build_style=python3-pep517
build_helper="meson qemu"
@@ -19,7 +19,7 @@ license="BSD-3-Clause"
homepage="https://www.numpy.org/"
changelog="https://github.com/numpy/numpy/releases"
distfiles="${PYPI_SITE}/n/numpy/numpy-${version}.tar.gz"
-checksum=2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+checksum=cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
alternatives="numpy:f2py:/usr/bin/f2py3"
build_options="openblas"
@@ -42,14 +42,10 @@ fi
post_patch() {
case "${XBPS_TARGET_MACHINE}" in
armv5tel-musl)
- cp "${FILESDIR}/fenv-constants.h" numpy/core/src/npymath/
+ cp "${FILESDIR}/fenv-constants.h" numpy/_core/src/npymath/
patch -Np0 -i "${FILESDIR}/fenv-constants.patch"
;;
esac
-
- if [ "$XBPS_TARGET_LIBC" = musl ] ; then
- vsed -i 's|"backtrace",||' numpy/core/setup_common.py
- fi
}
do_check() {
@@ -77,9 +73,17 @@ do_check() {
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer --destdir "${testdir}" dist/numpy*.whl
+ cd "${testdir}"
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
- python3 runtests.py --no-build -- \
- -n "${XBPS_MAKEJOBS}" ${_skip+-k "not(${_skip#or})"}
+ python3 <<-EOF
+ import numpy
+ numpy.test(
+ extra_argv=[
+ '-n', '${XBPS_MAKEJOBS}',
+ ${_skip+'-k', 'not(${_skip#or})'}
+ ],
+ )
+ EOF
}
post_install() {
From b22234fa3c25d083017f8c3f746fa7c69b7dc12a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 15:09:53 -0400
Subject: [PATCH 02/24] common/build-helper/numpy.sh: update paths for
python3-numpy-2.0.0
---
common/build-helper/numpy.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/common/build-helper/numpy.sh b/common/build-helper/numpy.sh
index e0856dbca7cf3c..0adce85e151fde 100644
--- a/common/build-helper/numpy.sh
+++ b/common/build-helper/numpy.sh
@@ -19,8 +19,8 @@ fi
# python3-setuptools finds numpy libs and headers on the host first;
# adding search paths up front allows the target to take priority
-CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
-LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/lib"
+CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
+LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/lib"
LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/random/lib"
# distutils from python3-numpy looks to environment variables F77 and
@@ -45,7 +45,7 @@ if [[ "${build_helper}" = *meson* ]]; then
mkdir -p "${XBPS_WRAPPERDIR}/meson"
cat > "${_npy_meson_cross}" <<-EOF
[properties]
- numpy-include-dir = '${_cross_py_site}/numpy/core/include'
+ numpy-include-dir = '${_cross_py_site}/numpy/_core/include'
pythran-include-dir = '${_cross_py_site}/pythran'
EOF
fi
From 43e79dcd9332f45974da1585d3e9d3945c943110 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:18:04 -0400
Subject: [PATCH 03/24] gnuradio: rebuild against python3-numpy-2.0.0
---
srcpkgs/gnuradio/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/gnuradio/template b/srcpkgs/gnuradio/template
index 58127cedd3ddc6..0ecf804c22c072 100644
--- a/srcpkgs/gnuradio/template
+++ b/srcpkgs/gnuradio/template
@@ -1,7 +1,7 @@
# Template file for 'gnuradio'
pkgname=gnuradio
version=3.10.8.0
-revision=1
+revision=2
build_style=cmake
conf_files="/etc/gnuradio/conf.d/*"
configure_args="-DMATHJAX2_USE_ROOT=/usr/share/mathjax
From 3f4a118b600e29ac0e5026b01163e4fc9d66c4c6 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:13:46 -0400
Subject: [PATCH 04/24] mypaint: rebuild against python3-numpy-2.0.0
---
srcpkgs/mypaint/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/mypaint/template b/srcpkgs/mypaint/template
index 1a1d995bd7e7cd..d5fdb8d67cf5ca 100644
--- a/srcpkgs/mypaint/template
+++ b/srcpkgs/mypaint/template
@@ -1,7 +1,7 @@
# Template file for 'mypaint'
pkgname=mypaint
version=2.0.1
-revision=5
+revision=6
build_style=python3-module
pycompile_dirs="/usr/share/mypaint"
hostmakedepends="swig pkg-config gettext python3-setuptools python3-numpy python3"
From 10589c77ca38757072e35d8a5c747cc304db997b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 05/24] opencv: rebuild against python3-numpy-2.0.0
---
srcpkgs/opencv/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/opencv/template b/srcpkgs/opencv/template
index aea4bfc3a265cf..69e81858de4ba9 100644
--- a/srcpkgs/opencv/template
+++ b/srcpkgs/opencv/template
@@ -1,7 +1,7 @@
# Template file for 'opencv'
pkgname=opencv
version=4.6.0
-revision=6
+revision=7
create_wrksrc=yes
build_wrksrc=${pkgname}-${version}
build_style=cmake
From 3316e325317316f01262109bf103c649d03034f0 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 06/24] plplot: rebuild against python3-numpy-2.0.0
---
srcpkgs/plplot/template | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/plplot/template b/srcpkgs/plplot/template
index a80e12310e9338..b17eee96f21240 100644
--- a/srcpkgs/plplot/template
+++ b/srcpkgs/plplot/template
@@ -1,11 +1,14 @@
# Template file for 'plplot'
pkgname=plplot
version=5.15.0
-revision=5
+revision=6
build_style=cmake
-build_helper="qemu"
-configure_args="-DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
- -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3"
+build_helper="qemu numpy"
+configure_args="
+ -DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
+ -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3
+ -DCMAKE_C_FLAGS=-I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include
+"
hostmakedepends="pkg-config gcc-fortran swig freefont-ttf
lua53 python3-numpy python3-setuptools plplot-devel"
makedepends="pango-devel cairo-devel freetype-devel libqhull-devel
From 375cce095fa3dc9161d7e86883c6fa9619fc3191 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:07:21 -0400
Subject: [PATCH 07/24] python3-Bottleneck: update to 1.4.0.
---
srcpkgs/python3-Bottleneck/template | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/srcpkgs/python3-Bottleneck/template b/srcpkgs/python3-Bottleneck/template
index afafcd572ddb58..1c9400da55a2ec 100644
--- a/srcpkgs/python3-Bottleneck/template
+++ b/srcpkgs/python3-Bottleneck/template
@@ -1,9 +1,10 @@
# Template file for 'python3-Bottleneck'
pkgname=python3-Bottleneck
-version=1.3.7
+version=1.4.0
revision=1
-build_style=python3-module
-hostmakedepends="python3-setuptools python3-numpy"
+build_style=python3-pep517
+make_check_target=".xbps-testdir/*/${py3_sitelib}/bottleneck/tests"
+hostmakedepends="python3-setuptools python3-versioneer python3-wheel python3-numpy"
makedepends="python3-devel"
depends="python3-numpy"
checkdepends="python3-pytest-xdist $depends"
@@ -11,8 +12,8 @@ short_desc="Fast NumPy array functions written in C (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-2-Clause"
homepage="https://github.com/kwgoodman/bottleneck"
-distfiles="${PYPI_SITE}/B/Bottleneck/Bottleneck-${version}.tar.gz"
-checksum=e1467e373ad469da340ed0ff283214d6531cc08bfdca2083361a3aa6470681f8
+distfiles="${PYPI_SITE}/b/bottleneck/bottleneck-${version}.tar.gz"
+checksum=beb36df519b8709e7d357c0c9639b03b885ca6355bbf5e53752c685de51605b8
post_install() {
rm -f ${DESTDIR}/usr/lib/python*/site-packages/bottleneck/LICENSE
From 57d1d39d67f910bd533f159b2e48012e7c224764 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:06:53 -0400
Subject: [PATCH 08/24] python3-PyOpenGL-accelerate: rebuild without
python3-numpy
---
srcpkgs/python3-PyOpenGL-accelerate/template | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/srcpkgs/python3-PyOpenGL-accelerate/template b/srcpkgs/python3-PyOpenGL-accelerate/template
index cec8b8c0bc6f4d..2161cd9b433d47 100644
--- a/srcpkgs/python3-PyOpenGL-accelerate/template
+++ b/srcpkgs/python3-PyOpenGL-accelerate/template
@@ -1,11 +1,11 @@
# Template file for 'python3-PyOpenGL-accelerate'
pkgname=python3-PyOpenGL-accelerate
version=3.1.7
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython"
-makedepends="python3-devel python3-numpy"
-depends="python3-numpy"
+makedepends="python3-devel"
+depends="python3"
short_desc="Acceleration code for PyOpenGL (Python3)"
maintainer="Alain Kalker <a.c.kalker@gmail.com>"
license="BSD-3-Clause"
From 488557026a9c2b04760d08c06a79ff0ddaf7bd14 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:33:54 -0400
Subject: [PATCH 09/24] python3-h5py: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-h5py/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-h5py/template b/srcpkgs/python3-h5py/template
index e71350fbf60ecb..c77df7c1123719 100644
--- a/srcpkgs/python3-h5py/template
+++ b/srcpkgs/python3-h5py/template
@@ -1,7 +1,7 @@
# Template file for 'python3-h5py'
pkgname=python3-h5py
version=3.11.0
-revision=1
+revision=2
build_style=python3-module
build_helper="numpy"
hostmakedepends="python3-setuptools python3-Cython0.29 python3-pkgconfig"
From b34dba3cee475b068c9740253e9d40d0f57fcbe1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:56:19 -0400
Subject: [PATCH 10/24] python3-matplotlib: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-matplotlib/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-matplotlib/template b/srcpkgs/python3-matplotlib/template
index 13f9b255ad16ad..3bc99f9f4de763 100644
--- a/srcpkgs/python3-matplotlib/template
+++ b/srcpkgs/python3-matplotlib/template
@@ -1,7 +1,7 @@
# Template file for 'python3-matplotlib'
pkgname=python3-matplotlib
version=3.9.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_build_args="-Csetup-args=-Dsystem-freetype=true
From 24090a4cd8c7154dee9ea43c3653efe7dd5c1b4b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 11/24] python3-numexpr: update to 2.10.1.
---
srcpkgs/python3-numexpr/template | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/srcpkgs/python3-numexpr/template b/srcpkgs/python3-numexpr/template
index 4e4b9dc3177840..d148218d101708 100644
--- a/srcpkgs/python3-numexpr/template
+++ b/srcpkgs/python3-numexpr/template
@@ -1,19 +1,20 @@
# Template file for 'python3-numexpr'
pkgname=python3-numexpr
-version=2.8.3
-revision=3
-build_style=python3-module
-build_helper=numpy
-hostmakedepends="python3-wheel"
+version=2.10.1
+revision=1
+build_style=python3-pep517
+build_helper="numpy"
+make_check_args="-k not(test_max_threads_unset)"
+hostmakedepends="python3-setuptools python3-wheel"
makedepends="python3-devel python3-numpy"
-depends="python3-numpy python3-packaging"
-checkdepends="${depends} python3-pytest-xdist"
+depends="python3-numpy"
+checkdepends="${depends} python3-pytest"
short_desc="Fast numerical expression evaluator for NumPy (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="MIT"
homepage="https://github.com/pydata/numexpr"
distfiles="https://github.com/pydata/numexpr/archive/v${version}.tar.gz"
-checksum=389ceefca74eff30ec3fd03fc4c3b7ab3df8f22d1f235117a392ce702ed208c0
+checksum=e499bd19a7fd9803d5ec1b2cff2e0a11a2f01a109d5326e5a09eff590448c793
pre_check() {
python3 setup.py build_ext --inplace
From ba1e84bcd6ac7daeeb8cba55359b4da9f52ad397 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 12/24] python3-numpy-stl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-numpy-stl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-numpy-stl/template b/srcpkgs/python3-numpy-stl/template
index 9257dca68817b6..72a7448c990aad 100644
--- a/srcpkgs/python3-numpy-stl/template
+++ b/srcpkgs/python3-numpy-stl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-numpy-stl'
pkgname=python3-numpy-stl
version=2.17.1
-revision=3
+revision=4
build_style=python3-module
build_helper="numpy"
# skip flake8 tests
From 14347ca63952e7da4c5879b0fb00d971d25a696a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:02 -0400
Subject: [PATCH 13/24] python3-pandas: update to 2.2.2.
---
.../patches/version-relaxation.patch | 24 -------------------
srcpkgs/python3-pandas/template | 10 ++++----
2 files changed, 6 insertions(+), 28 deletions(-)
delete mode 100644 srcpkgs/python3-pandas/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-pandas/patches/version-relaxation.patch b/srcpkgs/python3-pandas/patches/version-relaxation.patch
deleted file mode 100644
index c94e5fa170eebe..00000000000000
--- a/srcpkgs/python3-pandas/patches/version-relaxation.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./pyproject.toml.orig 2023-10-02 14:33:56.359267774 -0400
-+++ ./pyproject.toml 2023-10-02 14:35:29.662565059 -0400
-@@ -2,8 +2,8 @@
- # Minimum requirements for the build system to execute.
- # See https://github.com/scipy/scipy/pull/12940 for the AIX issue.
- requires = [
-- "meson-python==0.13.1",
-- "meson==1.2.1",
-+ "meson-python",
-+ "meson",
- "wheel",
- "Cython>=0.29.33,<3", # Note: sync with setup.py, environment.yml and asv.conf.json
- # Note: numpy 1.25 has a backwards compatible C API by default
---- ./meson.build.orig 2023-10-02 14:42:02.161816469 -0400
-+++ ./meson.build 2023-09-20 15:24:13.000000000 -0400
-@@ -4,7 +4,7 @@
- 'c', 'cpp', 'cython',
- version: run_command(['generate_version.py', '--print'], check: true).stdout().strip(),
- license: 'BSD-3',
-- meson_version: '>=1.2.1',
-+ meson_version: '>=1.2.0',
- default_options: [
- 'buildtype=release',
- 'c_std=c99'
diff --git a/srcpkgs/python3-pandas/template b/srcpkgs/python3-pandas/template
index c8e610dee33729..79e6f8462349cd 100644
--- a/srcpkgs/python3-pandas/template
+++ b/srcpkgs/python3-pandas/template
@@ -1,10 +1,12 @@
# Template file for 'python3-pandas'
pkgname=python3-pandas
-version=2.1.4
-revision=1
+version=2.2.2
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
-hostmakedepends="python3-meson-python python3-wheel python3-Cython0.29
+# Pandas imposes strict and unnecessary restrictions on build dependencies
+make_build_args="--skip-dependency-check"
+hostmakedepends="python3-meson-python python3-wheel python3-Cython
python3-numpy python3-versioneer pkg-config"
makedepends="python3-devel python3-numpy python3-dateutil python3-pytz"
depends="python3-numpy python3-dateutil python3-pytz"
@@ -14,7 +16,7 @@ license="BSD-3-Clause"
homepage="https://pandas.pydata.org/"
changelog="https://pandas.pydata.org/pandas-docs/stable/whatsnew/index.html"
distfiles="https://github.com/pandas-dev/pandas/archive/v${version}.tar.gz"
-checksum=00e0b049bac3d60c5701cae1f2fe57314f6ab8ae302b28953d4f9337817f6fc1
+checksum=79bc6fb5505afd27875c93fec27cece74318470c4e274ec7ef48b16f046dc006
# Builds seem to sometimes have missing symbol problems;
# the intermittent nature suggests this might be a race
disable_parallel_build=yes
From 120413cae67162f20a35d0b7ab04904e44ff4cd1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:15:55 -0400
Subject: [PATCH 14/24] python3-pyFFTW: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyFFTW/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyFFTW/template b/srcpkgs/python3-pyFFTW/template
index ba1f6fc9e158ab..414b77b639ada5 100644
--- a/srcpkgs/python3-pyFFTW/template
+++ b/srcpkgs/python3-pyFFTW/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyFFTW'
pkgname=python3-pyFFTW
version=0.13.1
-revision=2
+revision=3
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="fftw-devel python3-devel"
From a5c728354e734ea09610912138a8c7f5e58582f1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 15/24] python3-pyopencl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyopencl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyopencl/template b/srcpkgs/python3-pyopencl/template
index f57ba9421ed35a..09320616592f80 100644
--- a/srcpkgs/python3-pyopencl/template
+++ b/srcpkgs/python3-pyopencl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyopencl'
pkgname=python3-pyopencl
version=2024.2.7
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel python3-numpy
python3-scikit-build-core cmake ninja python3-nanobind"
From f5174ae54cb62fa8a5d443d1776eab8ddf209871 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 16/24] python3-pywt: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pywt/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pywt/template b/srcpkgs/python3-pywt/template
index b4890de4450b45..9930684cedcff0 100644
--- a/srcpkgs/python3-pywt/template
+++ b/srcpkgs/python3-pywt/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pywt'
pkgname=python3-pywt
version=1.6.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_check_target=".xbps-testdir/*/${py3_sitelib}/pywt/tests"
From 1b4cb7103a876f411a8ce2aac0c6493f001c92cf Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 17:03:26 -0400
Subject: [PATCH 17/24] pythran: fix required gast version
---
srcpkgs/pythran/patches/gast-0.6.patch | 76 ++++++++++++++++++++++++++
srcpkgs/pythran/template | 2 +-
2 files changed, 77 insertions(+), 1 deletion(-)
create mode 100644 srcpkgs/pythran/patches/gast-0.6.patch
diff --git a/srcpkgs/pythran/patches/gast-0.6.patch b/srcpkgs/pythran/patches/gast-0.6.patch
new file mode 100644
index 00000000000000..87dfcdcf450bce
--- /dev/null
+++ b/srcpkgs/pythran/patches/gast-0.6.patch
@@ -0,0 +1,76 @@
+From 840a0e706ec39963aec6bcd1f118bf33177c20b4 Mon Sep 17 00:00:00 2001
+From: serge-sans-paille <serge.guelton@telecom-bretagne.eu>
+Date: Sat, 29 Jun 2024 19:13:02 +0200
+Subject: [PATCH] Bump gast requirement to 0.6.0
+
+This mostly helps for harmonious behavior wrt. gast.dump
+---
+ docs/TUTORIAL.rst | 8 ++++----
+ pythran/utils.py | 2 +-
+ requirements.txt | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/docs/TUTORIAL.rst b/docs/TUTORIAL.rst
+index 09f6902f9..7692547eb 100644
+--- a/docs/TUTORIAL.rst
++++ b/docs/TUTORIAL.rst
+@@ -20,7 +20,7 @@ Python ships a standard module, ``ast`` to turn Python code into an AST. For ins
+ >>> code = "a=1"
+ >>> tree = ast.parse(code) # turn the code into an AST
+ >>> print(ast.dump(tree)) # view it as a string
+- Module(body=[Assign(targets=[Name(id='a', ctx=Store(), annotation=None, type_comment=None)], value=Constant(value=1, kind=None), type_comment=None)], type_ignores=[])
++ Module(body=[Assign(targets=[Name(id='a', ctx=Store())], value=Constant(value=1, kind=None))])
+
+ Deciphering the above line, one learns that the single assignment is parsed as
+ a module containing a single statement, which is an assignment to a single
+@@ -33,7 +33,7 @@ Eventually, one needs to parse more complex codes, and things get a bit more cry
+ ... return n if n< 2 else fib(n-1) + fib(n-2)"""
+ >>> tree = ast.parse(fib_src)
+ >>> print(ast.dump(tree))
+- Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param(), annotation=None, type_comment=None)], posonlyargs=[], vararg=None, kwonlyargs=[], kw_defaults=[], kwarg=None, defaults=[]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load(), annotation=None, type_comment=None), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=1, kind=None))], keywords=[]), op=Add(), right=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=2, kind=None))], keywords=[]))))], decorator_list=[], returns=None, type_comment=None)], type_ignores=[])
++ Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param())]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load()), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load()), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=1, kind=None))]), op=Add(), right=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=2, kind=None))]))))])])
+
+ The idea remains the same. The whole Python syntax is described in
+ http://docs.python.org/2/library/ast.html and is worth a glance, otherwise
+@@ -199,7 +199,7 @@ constant expressions. In the previous code, there is only two constant
+
+ >>> ce = pm.gather(analyses.ConstantExpressions, tree)
+ >>> sorted(map(ast.dump, ce))
+- ["Attribute(value=Name(id='math', ctx=Load(), annotation=None, type_comment=None), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
++ ["Attribute(value=Name(id='math', ctx=Load()), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
+
+ One of the most critical analyse of Pythran is the points-to analysis. There
+ are two flavors of this analyse, one that computes an over-set of the aliased
+@@ -210,7 +210,7 @@ variable, and one that computes an under set. ``Aliases`` computes an over-set::
+ >>> al = pm.gather(analyses.Aliases, tree)
+ >>> returned = tree.body[-1].body[-1].value
+ >>> print(ast.dump(returned))
+- Name(id='b', ctx=Load(), annotation=None, type_comment=None)
++ Name(id='b', ctx=Load())
+ >>> sorted(a.id for a in al[returned])
+ ['c', 'd']
+
+diff --git a/pythran/utils.py b/pythran/utils.py
+index 2d7a67327..55a7e8ad6 100644
+--- a/pythran/utils.py
++++ b/pythran/utils.py
+@@ -106,7 +106,7 @@ def get_variable(assignable):
+ ... slice=ast.Name('j', ast.Load(), None, None),
+ ... ctx=ast.Load())
+ >>> ast.dump(get_variable(ref))
+- "Name(id='a', ctx=Load(), annotation=None, type_comment=None)"
++ "Name(id='a', ctx=Load())"
+ """
+ msg = "Only name and subscript can be assigned."
+ assert isinstance(assignable, (ast.Name, ast.Subscript)), msg
+diff --git a/requirements.txt b/requirements.txt
+index fd6a738e5..c7a25c52a 100644
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -1,5 +1,5 @@
+ ply>=3.4
+ setuptools
+-gast~=0.5.0
++gast~=0.6.0
+ numpy
+ beniget~=0.4.0
diff --git a/srcpkgs/pythran/template b/srcpkgs/pythran/template
index a717256074d6d3..9a8761a767f67e 100644
--- a/srcpkgs/pythran/template
+++ b/srcpkgs/pythran/template
@@ -1,7 +1,7 @@
# Template file for 'pythran'
pkgname=pythran
version=0.16.1
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel"
depends="python3-ply python3-gast python3-beniget python3-numpy
From 02cf2b7d0c75c06c27de4a72e34d12f243124f98 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 18/24] python3-scikit-image: rebuild against
python3-numpy-2.0.0
---
srcpkgs/python3-scikit-image/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scikit-image/template b/srcpkgs/python3-scikit-image/template
index 144193cd39b330..914aa23ce673f2 100644
--- a/srcpkgs/python3-scikit-image/template
+++ b/srcpkgs/python3-scikit-image/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scikit-image'
pkgname=python3-scikit-image
version=0.24.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
hostmakedepends="python3-build python3-installer python3-meson-python
From 255c805cf035aa3ebee031615062ca757ea68cba Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 19/24] python3-scikit-learn: update to 1.5.0.
---
.../python3-scikit-learn/patches/numpy-version.patch | 11 -----------
srcpkgs/python3-scikit-learn/template | 12 ++++++------
2 files changed, 6 insertions(+), 17 deletions(-)
delete mode 100644 srcpkgs/python3-scikit-learn/patches/numpy-version.patch
diff --git a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch b/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
deleted file mode 100644
index 0ffb53e3433e9b..00000000000000
--- a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -9,7 +9,7 @@
- # wheels on PyPI
- #
- # see: https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
-- "oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
-+ "numpy>=1.23.2; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
- # For CPython 3.10 under Windows, SciPy requires NumPy 1.22.3 while the
- # oldest supported NumPy is defined as 1.21.6. We therefore need to force
- # it for this specific configuration. For details, see
diff --git a/srcpkgs/python3-scikit-learn/template b/srcpkgs/python3-scikit-learn/template
index a6364f089c4f4d..f1129c841738fe 100644
--- a/srcpkgs/python3-scikit-learn/template
+++ b/srcpkgs/python3-scikit-learn/template
@@ -1,18 +1,18 @@
# Template file for 'python3-scikit-learn'
pkgname=python3-scikit-learn
-version=1.3.0
-revision=2
+version=1.5.0
+revision=1
build_style=python3-pep517
-hostmakedepends="python3-setuptools python3-Cython python3-numpy python3-scipy
- python3-wheel"
-makedepends="python3-devel libgomp-devel"
+build_helper="numpy meson"
+hostmakedepends="python3-Cython python3-numpy python3-scipy python3-meson-python"
+makedepends="python3-devel python3-numpy libgomp-devel"
depends="python3-numpy python3-scipy python3-joblib python3-threadpoolctl"
short_desc="Python3 modules for machine learning and data mining"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-3-Clause"
homepage="https://scikit-learn.org/"
distfiles="https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz"
-checksum=ead129f466a0859555ce4f41280ae06623ef3255efff0b1692c57f15e39767b5
+checksum=cd2aac2b566c7e740d34aabb4737864c74ba33c29aad7101fbf1bab2931c02dc
make_check=no # tests don't work properly unless package is installed
export SKLEARN_BUILD_PARALLEL="${XBPS_MAKEJOBS}"
From 315893e8d78630aa616a64c75cfcf368e2229cc4 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 20/24] python3-scipy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-scipy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scipy/template b/srcpkgs/python3-scipy/template
index 41cf9ddb873aab..e35cd25b4595c6 100644
--- a/srcpkgs/python3-scipy/template
+++ b/srcpkgs/python3-scipy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scipy'
pkgname=python3-scipy
version=1.14.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
# SciPy imposes strict and unnecessary restrictions on build dependencies
From 3bf1a6fae50891902dae375e03be8309ec23dfd9 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 21/24] python3-tables: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-tables/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-tables/template b/srcpkgs/python3-tables/template
index 81b7351b972649..38c93292ea4bf8 100644
--- a/srcpkgs/python3-tables/template
+++ b/srcpkgs/python3-tables/template
@@ -1,7 +1,7 @@
# Template file for 'python3-tables'
pkgname=python3-tables
version=3.7.0
-revision=3
+revision=4
build_style=python3-module
build_helper=numpy
# XXX: c-blosc (using internal for now)
From 03ef4a6cbb1054000a93459f97e97242a2728232 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 22/24] python3-vispy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-vispy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-vispy/template b/srcpkgs/python3-vispy/template
index 60dc8ae4b82996..6411756abc3b71 100644
--- a/srcpkgs/python3-vispy/template
+++ b/srcpkgs/python3-vispy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-vispy'
pkgname=python3-vispy
version=0.6.1
-revision=8
+revision=9
build_style=python3-module
build_helper=numpy
hostmakedepends="python3-setuptools python3-Cython python3-numpy"
From 7b39508ac44a09ff41dd8bb12358ae74bee26c86 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 23/24] urh: rebuild against python3-numpy-2.0.0
---
srcpkgs/urh/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/urh/template b/srcpkgs/urh/template
index f86a7ea530c762..7c109b044b1462 100644
--- a/srcpkgs/urh/template
+++ b/srcpkgs/urh/template
@@ -1,7 +1,7 @@
# Template file for 'urh'
pkgname=urh
version=2.9.6
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="python3-devel python3-PyQt5 libairspy-devel librtlsdr-devel
From ca1b100d3e0608c69913ff376bdb5bb4fc4c2e3a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:08:40 -0400
Subject: [PATCH 24/24] wxPython: fix runtime dependencies
---
srcpkgs/wxPython/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/wxPython/template b/srcpkgs/wxPython/template
index 7f4c8a21e18589..0d29630771a48f 100644
--- a/srcpkgs/wxPython/template
+++ b/srcpkgs/wxPython/template
@@ -1,14 +1,14 @@
# Template file for 'wxPython'
pkgname=wxPython
version=4.2.1
-revision=4
+revision=5
build_style=python3-module
make_build_args="--skip-build"
make_install_args="--skip-build"
hostmakedepends="pkg-config python3-setuptools python3-pathlib2 python3-Cython0.29"
makedepends="python3-devel wxWidgets-gtk3-devel SDL2-devel
gst-plugins-base1-devel"
-depends="python3 python3-six python3-numpy python3-Pillow"
+depends="python3-six"
short_desc="Python bindings for wxWidgets"
maintainer="Orphaned <orphan@voidlinux.org>"
license="custom:wxWindows"
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [PR PATCH] [Updated] [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (7 preceding siblings ...)
2024-07-02 15:54 ` ahesford
@ 2024-07-02 18:11 ` ahesford
2024-07-03 13:56 ` ahesford
` (2 subsequent siblings)
11 siblings, 0 replies; 13+ messages in thread
From: ahesford @ 2024-07-02 18:11 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2360 bytes --]
There is an updated pull request by ahesford against master on the void-packages repository
https://github.com/ahesford/void-packages numpy
https://github.com/void-linux/void-packages/pull/51077
[WIP] NumPy 2.0
This update removes a lot of long-deprecated interfaces and probably breaks several dependants. It will need careful testing.
[ci skip]
The following packages ship shared libraries; most require a rebuild to even be importable, and the rest are included just to be sure (each will be ticked as it is tested for compatibility):
- [ ] gnuradio
- [ ] mypaint
- [ ] opencv
- [ ] plplot
- [x] python3-Bottleneck (a single test failure for memory leaks appears unrelated to NumPy)
- [x] python3-PyOpenGL-accelerate (its only dependant doesn't require NumPy support, so I'll rebuild without support)
- [x] python3-h5py
- [x] python3-matplotlib (basic use seems to work)
- [x] python3-numexpr
- [ ] python3-numpy-stl (several test failures related to closeness tests that aren't quite as close as expected; also, a few interface changes leak into tests)
- [ ] python3-pandas
- [ ] python3-pyFFTW (several test failures, with implications beyond NumPy; needs more investigation)
- [ ] python3-pyopencl
- [x] python3-pywt
- [ ] python3-scikit-image
- [ ] python3-scikit-learn
- [ ] python3-scipy
- [ ] python3-tables
- [ ] python3-vispy
- [ ] urh
- [x] wxPython (doesn't actually depend on NumPy, so it will be rebuilt to correct dependencies)
The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
- DisplayCAL
The following packages do not appear to build Python extensions and should not require a rebuild, but some tests should be performed to ensure basic functionality with NumPy 2.0:
- [ ] bCNC
- [ ] flowblade
- [ ] grass
- [ ] hydrus
- [ ] inkscape
- [ ] openrazer-meta
- [ ] pymol
- [ ] python3-bokeh
- [ ] python3-imageio
- [ ] python3-joblib
- [ ] python3-niapy
- [ ] python3-openai
- [ ] python3-pgzero
- [ ] python3-pycollada
- [ ] python3-pyqtgraph
- [x] python3-pytools
- [ ] python3-seaborn
- [ ] python3-tifffile
- [ ] python3-trimesh
- [x] pythran (compiles python3-scipy and python3-scikit-image just fine)
- [ ] qgis
- [ ] xdot
A patch file from https://github.com/void-linux/void-packages/pull/51077.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-numpy-51077.patch --]
[-- Type: text/x-diff, Size: 35006 bytes --]
From 1b520369f80a8f63d02cabbf0bcff74424e35483 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:07:16 -0400
Subject: [PATCH 01/24] python3-numpy: update to 2.0.0.
---
.../python3-numpy/files/fenv-constants.patch | 10 ++++-----
.../patches/fix-pytest-warning.patch | 8 -------
.../patches/version-relaxation.patch | 14 ------------
srcpkgs/python3-numpy/template | 22 +++++++++++--------
4 files changed, 18 insertions(+), 36 deletions(-)
delete mode 100644 srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
delete mode 100644 srcpkgs/python3-numpy/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-numpy/files/fenv-constants.patch b/srcpkgs/python3-numpy/files/fenv-constants.patch
index 987ad4e346ffa5..075cac8a0820c6 100644
--- a/srcpkgs/python3-numpy/files/fenv-constants.patch
+++ b/srcpkgs/python3-numpy/files/fenv-constants.patch
@@ -1,11 +1,11 @@
---- numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:53:51.998825328 +1000
-+++ numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:54:03.611889518 +1000
+--- numpy/_core/src/npymath/ieee754.c.src.orig 2024-07-02 11:50:48.519261116 -0400
++++ numpy/_core/src/npymath/ieee754.c.src 2024-07-02 11:51:06.336360850 -0400
@@ -8,6 +8,8 @@
#include "npy_math_private.h"
#include "numpy/utils.h"
+#include "fenv-constants.h"
+
- #ifndef HAVE_COPYSIGN
- double npy_copysign(double x, double y)
- {
+ /*
+ The below code is provided for compilers which do not yet provide C11 compatibility (gcc 4.5 and older)
+ */
diff --git a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch b/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
deleted file mode 100644
index 990ab80197542c..00000000000000
--- a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- a/pytest.ini 2023-06-16 22:48:37.211072200 -0300
-+++ b/pytest.ini 2023-06-19 22:52:00.230063231 -0300
-@@ -27,3 +27,5 @@
- ignore:\n\n `numpy.distutils`:DeprecationWarning
- # Ignore mypy >= 0.971 DeprecationWarnings
- ignore:path is deprecated\. Use files\(\) instead:DeprecationWarning:mypy
-+# Ignore warning raised when importing setuptools.command.
-+ ignore:pkg_resources is deprecated as an API:DeprecationWarning
diff --git a/srcpkgs/python3-numpy/patches/version-relaxation.patch b/srcpkgs/python3-numpy/patches/version-relaxation.patch
deleted file mode 100644
index f36972e5cc96a7..00000000000000
--- a/srcpkgs/python3-numpy/patches/version-relaxation.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-As with SciPy, NumPy abuses specifications of *build requirements* as a means
-to control the environment under which wheels are built for distribution.
-
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -2,7 +2,7 @@
- build-backend = "mesonpy"
- requires = [
- "Cython>=0.29.34,<3.1",
-- "meson-python>=0.15.0,<0.16.0",
-+ "meson-python>=0.15.0",
- ]
-
- [project]
diff --git a/srcpkgs/python3-numpy/template b/srcpkgs/python3-numpy/template
index e6b6accb42ab4a..2adde47160b768 100644
--- a/srcpkgs/python3-numpy/template
+++ b/srcpkgs/python3-numpy/template
@@ -1,6 +1,6 @@
# Template file for 'python3-numpy'
pkgname=python3-numpy
-version=1.26.4
+version=2.0.0
revision=1
build_style=python3-pep517
build_helper="meson qemu"
@@ -19,7 +19,7 @@ license="BSD-3-Clause"
homepage="https://www.numpy.org/"
changelog="https://github.com/numpy/numpy/releases"
distfiles="${PYPI_SITE}/n/numpy/numpy-${version}.tar.gz"
-checksum=2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+checksum=cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
alternatives="numpy:f2py:/usr/bin/f2py3"
build_options="openblas"
@@ -42,14 +42,10 @@ fi
post_patch() {
case "${XBPS_TARGET_MACHINE}" in
armv5tel-musl)
- cp "${FILESDIR}/fenv-constants.h" numpy/core/src/npymath/
+ cp "${FILESDIR}/fenv-constants.h" numpy/_core/src/npymath/
patch -Np0 -i "${FILESDIR}/fenv-constants.patch"
;;
esac
-
- if [ "$XBPS_TARGET_LIBC" = musl ] ; then
- vsed -i 's|"backtrace",||' numpy/core/setup_common.py
- fi
}
do_check() {
@@ -77,9 +73,17 @@ do_check() {
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer --destdir "${testdir}" dist/numpy*.whl
+ cd "${testdir}"
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
- python3 runtests.py --no-build -- \
- -n "${XBPS_MAKEJOBS}" ${_skip+-k "not(${_skip#or})"}
+ python3 <<-EOF
+ import numpy
+ numpy.test(
+ extra_argv=[
+ '-n', '${XBPS_MAKEJOBS}',
+ ${_skip+'-k', 'not(${_skip#or})'}
+ ],
+ )
+ EOF
}
post_install() {
From b22234fa3c25d083017f8c3f746fa7c69b7dc12a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 15:09:53 -0400
Subject: [PATCH 02/24] common/build-helper/numpy.sh: update paths for
python3-numpy-2.0.0
---
common/build-helper/numpy.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/common/build-helper/numpy.sh b/common/build-helper/numpy.sh
index e0856dbca7cf3c..0adce85e151fde 100644
--- a/common/build-helper/numpy.sh
+++ b/common/build-helper/numpy.sh
@@ -19,8 +19,8 @@ fi
# python3-setuptools finds numpy libs and headers on the host first;
# adding search paths up front allows the target to take priority
-CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
-LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/lib"
+CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
+LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/lib"
LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/random/lib"
# distutils from python3-numpy looks to environment variables F77 and
@@ -45,7 +45,7 @@ if [[ "${build_helper}" = *meson* ]]; then
mkdir -p "${XBPS_WRAPPERDIR}/meson"
cat > "${_npy_meson_cross}" <<-EOF
[properties]
- numpy-include-dir = '${_cross_py_site}/numpy/core/include'
+ numpy-include-dir = '${_cross_py_site}/numpy/_core/include'
pythran-include-dir = '${_cross_py_site}/pythran'
EOF
fi
From 43e79dcd9332f45974da1585d3e9d3945c943110 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:18:04 -0400
Subject: [PATCH 03/24] gnuradio: rebuild against python3-numpy-2.0.0
---
srcpkgs/gnuradio/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/gnuradio/template b/srcpkgs/gnuradio/template
index 58127cedd3ddc6..0ecf804c22c072 100644
--- a/srcpkgs/gnuradio/template
+++ b/srcpkgs/gnuradio/template
@@ -1,7 +1,7 @@
# Template file for 'gnuradio'
pkgname=gnuradio
version=3.10.8.0
-revision=1
+revision=2
build_style=cmake
conf_files="/etc/gnuradio/conf.d/*"
configure_args="-DMATHJAX2_USE_ROOT=/usr/share/mathjax
From 3f4a118b600e29ac0e5026b01163e4fc9d66c4c6 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:13:46 -0400
Subject: [PATCH 04/24] mypaint: rebuild against python3-numpy-2.0.0
---
srcpkgs/mypaint/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/mypaint/template b/srcpkgs/mypaint/template
index 1a1d995bd7e7cd..d5fdb8d67cf5ca 100644
--- a/srcpkgs/mypaint/template
+++ b/srcpkgs/mypaint/template
@@ -1,7 +1,7 @@
# Template file for 'mypaint'
pkgname=mypaint
version=2.0.1
-revision=5
+revision=6
build_style=python3-module
pycompile_dirs="/usr/share/mypaint"
hostmakedepends="swig pkg-config gettext python3-setuptools python3-numpy python3"
From 10589c77ca38757072e35d8a5c747cc304db997b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 05/24] opencv: rebuild against python3-numpy-2.0.0
---
srcpkgs/opencv/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/opencv/template b/srcpkgs/opencv/template
index aea4bfc3a265cf..69e81858de4ba9 100644
--- a/srcpkgs/opencv/template
+++ b/srcpkgs/opencv/template
@@ -1,7 +1,7 @@
# Template file for 'opencv'
pkgname=opencv
version=4.6.0
-revision=6
+revision=7
create_wrksrc=yes
build_wrksrc=${pkgname}-${version}
build_style=cmake
From 3316e325317316f01262109bf103c649d03034f0 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 06/24] plplot: rebuild against python3-numpy-2.0.0
---
srcpkgs/plplot/template | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/plplot/template b/srcpkgs/plplot/template
index a80e12310e9338..b17eee96f21240 100644
--- a/srcpkgs/plplot/template
+++ b/srcpkgs/plplot/template
@@ -1,11 +1,14 @@
# Template file for 'plplot'
pkgname=plplot
version=5.15.0
-revision=5
+revision=6
build_style=cmake
-build_helper="qemu"
-configure_args="-DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
- -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3"
+build_helper="qemu numpy"
+configure_args="
+ -DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
+ -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3
+ -DCMAKE_C_FLAGS=-I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include
+"
hostmakedepends="pkg-config gcc-fortran swig freefont-ttf
lua53 python3-numpy python3-setuptools plplot-devel"
makedepends="pango-devel cairo-devel freetype-devel libqhull-devel
From 375cce095fa3dc9161d7e86883c6fa9619fc3191 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:07:21 -0400
Subject: [PATCH 07/24] python3-Bottleneck: update to 1.4.0.
---
srcpkgs/python3-Bottleneck/template | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/srcpkgs/python3-Bottleneck/template b/srcpkgs/python3-Bottleneck/template
index afafcd572ddb58..1c9400da55a2ec 100644
--- a/srcpkgs/python3-Bottleneck/template
+++ b/srcpkgs/python3-Bottleneck/template
@@ -1,9 +1,10 @@
# Template file for 'python3-Bottleneck'
pkgname=python3-Bottleneck
-version=1.3.7
+version=1.4.0
revision=1
-build_style=python3-module
-hostmakedepends="python3-setuptools python3-numpy"
+build_style=python3-pep517
+make_check_target=".xbps-testdir/*/${py3_sitelib}/bottleneck/tests"
+hostmakedepends="python3-setuptools python3-versioneer python3-wheel python3-numpy"
makedepends="python3-devel"
depends="python3-numpy"
checkdepends="python3-pytest-xdist $depends"
@@ -11,8 +12,8 @@ short_desc="Fast NumPy array functions written in C (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-2-Clause"
homepage="https://github.com/kwgoodman/bottleneck"
-distfiles="${PYPI_SITE}/B/Bottleneck/Bottleneck-${version}.tar.gz"
-checksum=e1467e373ad469da340ed0ff283214d6531cc08bfdca2083361a3aa6470681f8
+distfiles="${PYPI_SITE}/b/bottleneck/bottleneck-${version}.tar.gz"
+checksum=beb36df519b8709e7d357c0c9639b03b885ca6355bbf5e53752c685de51605b8
post_install() {
rm -f ${DESTDIR}/usr/lib/python*/site-packages/bottleneck/LICENSE
From 57d1d39d67f910bd533f159b2e48012e7c224764 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:06:53 -0400
Subject: [PATCH 08/24] python3-PyOpenGL-accelerate: rebuild without
python3-numpy
---
srcpkgs/python3-PyOpenGL-accelerate/template | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/srcpkgs/python3-PyOpenGL-accelerate/template b/srcpkgs/python3-PyOpenGL-accelerate/template
index cec8b8c0bc6f4d..2161cd9b433d47 100644
--- a/srcpkgs/python3-PyOpenGL-accelerate/template
+++ b/srcpkgs/python3-PyOpenGL-accelerate/template
@@ -1,11 +1,11 @@
# Template file for 'python3-PyOpenGL-accelerate'
pkgname=python3-PyOpenGL-accelerate
version=3.1.7
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython"
-makedepends="python3-devel python3-numpy"
-depends="python3-numpy"
+makedepends="python3-devel"
+depends="python3"
short_desc="Acceleration code for PyOpenGL (Python3)"
maintainer="Alain Kalker <a.c.kalker@gmail.com>"
license="BSD-3-Clause"
From 488557026a9c2b04760d08c06a79ff0ddaf7bd14 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:33:54 -0400
Subject: [PATCH 09/24] python3-h5py: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-h5py/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-h5py/template b/srcpkgs/python3-h5py/template
index e71350fbf60ecb..c77df7c1123719 100644
--- a/srcpkgs/python3-h5py/template
+++ b/srcpkgs/python3-h5py/template
@@ -1,7 +1,7 @@
# Template file for 'python3-h5py'
pkgname=python3-h5py
version=3.11.0
-revision=1
+revision=2
build_style=python3-module
build_helper="numpy"
hostmakedepends="python3-setuptools python3-Cython0.29 python3-pkgconfig"
From b34dba3cee475b068c9740253e9d40d0f57fcbe1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:56:19 -0400
Subject: [PATCH 10/24] python3-matplotlib: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-matplotlib/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-matplotlib/template b/srcpkgs/python3-matplotlib/template
index 13f9b255ad16ad..3bc99f9f4de763 100644
--- a/srcpkgs/python3-matplotlib/template
+++ b/srcpkgs/python3-matplotlib/template
@@ -1,7 +1,7 @@
# Template file for 'python3-matplotlib'
pkgname=python3-matplotlib
version=3.9.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_build_args="-Csetup-args=-Dsystem-freetype=true
From 24090a4cd8c7154dee9ea43c3653efe7dd5c1b4b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 11/24] python3-numexpr: update to 2.10.1.
---
srcpkgs/python3-numexpr/template | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/srcpkgs/python3-numexpr/template b/srcpkgs/python3-numexpr/template
index 4e4b9dc3177840..d148218d101708 100644
--- a/srcpkgs/python3-numexpr/template
+++ b/srcpkgs/python3-numexpr/template
@@ -1,19 +1,20 @@
# Template file for 'python3-numexpr'
pkgname=python3-numexpr
-version=2.8.3
-revision=3
-build_style=python3-module
-build_helper=numpy
-hostmakedepends="python3-wheel"
+version=2.10.1
+revision=1
+build_style=python3-pep517
+build_helper="numpy"
+make_check_args="-k not(test_max_threads_unset)"
+hostmakedepends="python3-setuptools python3-wheel"
makedepends="python3-devel python3-numpy"
-depends="python3-numpy python3-packaging"
-checkdepends="${depends} python3-pytest-xdist"
+depends="python3-numpy"
+checkdepends="${depends} python3-pytest"
short_desc="Fast numerical expression evaluator for NumPy (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="MIT"
homepage="https://github.com/pydata/numexpr"
distfiles="https://github.com/pydata/numexpr/archive/v${version}.tar.gz"
-checksum=389ceefca74eff30ec3fd03fc4c3b7ab3df8f22d1f235117a392ce702ed208c0
+checksum=e499bd19a7fd9803d5ec1b2cff2e0a11a2f01a109d5326e5a09eff590448c793
pre_check() {
python3 setup.py build_ext --inplace
From ba1e84bcd6ac7daeeb8cba55359b4da9f52ad397 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 12/24] python3-numpy-stl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-numpy-stl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-numpy-stl/template b/srcpkgs/python3-numpy-stl/template
index 9257dca68817b6..72a7448c990aad 100644
--- a/srcpkgs/python3-numpy-stl/template
+++ b/srcpkgs/python3-numpy-stl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-numpy-stl'
pkgname=python3-numpy-stl
version=2.17.1
-revision=3
+revision=4
build_style=python3-module
build_helper="numpy"
# skip flake8 tests
From 14347ca63952e7da4c5879b0fb00d971d25a696a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:02 -0400
Subject: [PATCH 13/24] python3-pandas: update to 2.2.2.
---
.../patches/version-relaxation.patch | 24 -------------------
srcpkgs/python3-pandas/template | 10 ++++----
2 files changed, 6 insertions(+), 28 deletions(-)
delete mode 100644 srcpkgs/python3-pandas/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-pandas/patches/version-relaxation.patch b/srcpkgs/python3-pandas/patches/version-relaxation.patch
deleted file mode 100644
index c94e5fa170eebe..00000000000000
--- a/srcpkgs/python3-pandas/patches/version-relaxation.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./pyproject.toml.orig 2023-10-02 14:33:56.359267774 -0400
-+++ ./pyproject.toml 2023-10-02 14:35:29.662565059 -0400
-@@ -2,8 +2,8 @@
- # Minimum requirements for the build system to execute.
- # See https://github.com/scipy/scipy/pull/12940 for the AIX issue.
- requires = [
-- "meson-python==0.13.1",
-- "meson==1.2.1",
-+ "meson-python",
-+ "meson",
- "wheel",
- "Cython>=0.29.33,<3", # Note: sync with setup.py, environment.yml and asv.conf.json
- # Note: numpy 1.25 has a backwards compatible C API by default
---- ./meson.build.orig 2023-10-02 14:42:02.161816469 -0400
-+++ ./meson.build 2023-09-20 15:24:13.000000000 -0400
-@@ -4,7 +4,7 @@
- 'c', 'cpp', 'cython',
- version: run_command(['generate_version.py', '--print'], check: true).stdout().strip(),
- license: 'BSD-3',
-- meson_version: '>=1.2.1',
-+ meson_version: '>=1.2.0',
- default_options: [
- 'buildtype=release',
- 'c_std=c99'
diff --git a/srcpkgs/python3-pandas/template b/srcpkgs/python3-pandas/template
index c8e610dee33729..79e6f8462349cd 100644
--- a/srcpkgs/python3-pandas/template
+++ b/srcpkgs/python3-pandas/template
@@ -1,10 +1,12 @@
# Template file for 'python3-pandas'
pkgname=python3-pandas
-version=2.1.4
-revision=1
+version=2.2.2
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
-hostmakedepends="python3-meson-python python3-wheel python3-Cython0.29
+# Pandas imposes strict and unnecessary restrictions on build dependencies
+make_build_args="--skip-dependency-check"
+hostmakedepends="python3-meson-python python3-wheel python3-Cython
python3-numpy python3-versioneer pkg-config"
makedepends="python3-devel python3-numpy python3-dateutil python3-pytz"
depends="python3-numpy python3-dateutil python3-pytz"
@@ -14,7 +16,7 @@ license="BSD-3-Clause"
homepage="https://pandas.pydata.org/"
changelog="https://pandas.pydata.org/pandas-docs/stable/whatsnew/index.html"
distfiles="https://github.com/pandas-dev/pandas/archive/v${version}.tar.gz"
-checksum=00e0b049bac3d60c5701cae1f2fe57314f6ab8ae302b28953d4f9337817f6fc1
+checksum=79bc6fb5505afd27875c93fec27cece74318470c4e274ec7ef48b16f046dc006
# Builds seem to sometimes have missing symbol problems;
# the intermittent nature suggests this might be a race
disable_parallel_build=yes
From 120413cae67162f20a35d0b7ab04904e44ff4cd1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:15:55 -0400
Subject: [PATCH 14/24] python3-pyFFTW: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyFFTW/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyFFTW/template b/srcpkgs/python3-pyFFTW/template
index ba1f6fc9e158ab..414b77b639ada5 100644
--- a/srcpkgs/python3-pyFFTW/template
+++ b/srcpkgs/python3-pyFFTW/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyFFTW'
pkgname=python3-pyFFTW
version=0.13.1
-revision=2
+revision=3
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="fftw-devel python3-devel"
From a5c728354e734ea09610912138a8c7f5e58582f1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 15/24] python3-pyopencl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyopencl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyopencl/template b/srcpkgs/python3-pyopencl/template
index f57ba9421ed35a..09320616592f80 100644
--- a/srcpkgs/python3-pyopencl/template
+++ b/srcpkgs/python3-pyopencl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyopencl'
pkgname=python3-pyopencl
version=2024.2.7
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel python3-numpy
python3-scikit-build-core cmake ninja python3-nanobind"
From f5174ae54cb62fa8a5d443d1776eab8ddf209871 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 16/24] python3-pywt: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pywt/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pywt/template b/srcpkgs/python3-pywt/template
index b4890de4450b45..9930684cedcff0 100644
--- a/srcpkgs/python3-pywt/template
+++ b/srcpkgs/python3-pywt/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pywt'
pkgname=python3-pywt
version=1.6.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_check_target=".xbps-testdir/*/${py3_sitelib}/pywt/tests"
From 1b4cb7103a876f411a8ce2aac0c6493f001c92cf Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 17:03:26 -0400
Subject: [PATCH 17/24] pythran: fix required gast version
---
srcpkgs/pythran/patches/gast-0.6.patch | 76 ++++++++++++++++++++++++++
srcpkgs/pythran/template | 2 +-
2 files changed, 77 insertions(+), 1 deletion(-)
create mode 100644 srcpkgs/pythran/patches/gast-0.6.patch
diff --git a/srcpkgs/pythran/patches/gast-0.6.patch b/srcpkgs/pythran/patches/gast-0.6.patch
new file mode 100644
index 00000000000000..87dfcdcf450bce
--- /dev/null
+++ b/srcpkgs/pythran/patches/gast-0.6.patch
@@ -0,0 +1,76 @@
+From 840a0e706ec39963aec6bcd1f118bf33177c20b4 Mon Sep 17 00:00:00 2001
+From: serge-sans-paille <serge.guelton@telecom-bretagne.eu>
+Date: Sat, 29 Jun 2024 19:13:02 +0200
+Subject: [PATCH] Bump gast requirement to 0.6.0
+
+This mostly helps for harmonious behavior wrt. gast.dump
+---
+ docs/TUTORIAL.rst | 8 ++++----
+ pythran/utils.py | 2 +-
+ requirements.txt | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/docs/TUTORIAL.rst b/docs/TUTORIAL.rst
+index 09f6902f9..7692547eb 100644
+--- a/docs/TUTORIAL.rst
++++ b/docs/TUTORIAL.rst
+@@ -20,7 +20,7 @@ Python ships a standard module, ``ast`` to turn Python code into an AST. For ins
+ >>> code = "a=1"
+ >>> tree = ast.parse(code) # turn the code into an AST
+ >>> print(ast.dump(tree)) # view it as a string
+- Module(body=[Assign(targets=[Name(id='a', ctx=Store(), annotation=None, type_comment=None)], value=Constant(value=1, kind=None), type_comment=None)], type_ignores=[])
++ Module(body=[Assign(targets=[Name(id='a', ctx=Store())], value=Constant(value=1, kind=None))])
+
+ Deciphering the above line, one learns that the single assignment is parsed as
+ a module containing a single statement, which is an assignment to a single
+@@ -33,7 +33,7 @@ Eventually, one needs to parse more complex codes, and things get a bit more cry
+ ... return n if n< 2 else fib(n-1) + fib(n-2)"""
+ >>> tree = ast.parse(fib_src)
+ >>> print(ast.dump(tree))
+- Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param(), annotation=None, type_comment=None)], posonlyargs=[], vararg=None, kwonlyargs=[], kw_defaults=[], kwarg=None, defaults=[]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load(), annotation=None, type_comment=None), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=1, kind=None))], keywords=[]), op=Add(), right=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=2, kind=None))], keywords=[]))))], decorator_list=[], returns=None, type_comment=None)], type_ignores=[])
++ Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param())]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load()), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load()), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=1, kind=None))]), op=Add(), right=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=2, kind=None))]))))])])
+
+ The idea remains the same. The whole Python syntax is described in
+ http://docs.python.org/2/library/ast.html and is worth a glance, otherwise
+@@ -199,7 +199,7 @@ constant expressions. In the previous code, there is only two constant
+
+ >>> ce = pm.gather(analyses.ConstantExpressions, tree)
+ >>> sorted(map(ast.dump, ce))
+- ["Attribute(value=Name(id='math', ctx=Load(), annotation=None, type_comment=None), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
++ ["Attribute(value=Name(id='math', ctx=Load()), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
+
+ One of the most critical analyse of Pythran is the points-to analysis. There
+ are two flavors of this analyse, one that computes an over-set of the aliased
+@@ -210,7 +210,7 @@ variable, and one that computes an under set. ``Aliases`` computes an over-set::
+ >>> al = pm.gather(analyses.Aliases, tree)
+ >>> returned = tree.body[-1].body[-1].value
+ >>> print(ast.dump(returned))
+- Name(id='b', ctx=Load(), annotation=None, type_comment=None)
++ Name(id='b', ctx=Load())
+ >>> sorted(a.id for a in al[returned])
+ ['c', 'd']
+
+diff --git a/pythran/utils.py b/pythran/utils.py
+index 2d7a67327..55a7e8ad6 100644
+--- a/pythran/utils.py
++++ b/pythran/utils.py
+@@ -106,7 +106,7 @@ def get_variable(assignable):
+ ... slice=ast.Name('j', ast.Load(), None, None),
+ ... ctx=ast.Load())
+ >>> ast.dump(get_variable(ref))
+- "Name(id='a', ctx=Load(), annotation=None, type_comment=None)"
++ "Name(id='a', ctx=Load())"
+ """
+ msg = "Only name and subscript can be assigned."
+ assert isinstance(assignable, (ast.Name, ast.Subscript)), msg
+diff --git a/requirements.txt b/requirements.txt
+index fd6a738e5..c7a25c52a 100644
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -1,5 +1,5 @@
+ ply>=3.4
+ setuptools
+-gast~=0.5.0
++gast~=0.6.0
+ numpy
+ beniget~=0.4.0
diff --git a/srcpkgs/pythran/template b/srcpkgs/pythran/template
index a717256074d6d3..9a8761a767f67e 100644
--- a/srcpkgs/pythran/template
+++ b/srcpkgs/pythran/template
@@ -1,7 +1,7 @@
# Template file for 'pythran'
pkgname=pythran
version=0.16.1
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel"
depends="python3-ply python3-gast python3-beniget python3-numpy
From 02cf2b7d0c75c06c27de4a72e34d12f243124f98 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 18/24] python3-scikit-image: rebuild against
python3-numpy-2.0.0
---
srcpkgs/python3-scikit-image/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scikit-image/template b/srcpkgs/python3-scikit-image/template
index 144193cd39b330..914aa23ce673f2 100644
--- a/srcpkgs/python3-scikit-image/template
+++ b/srcpkgs/python3-scikit-image/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scikit-image'
pkgname=python3-scikit-image
version=0.24.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
hostmakedepends="python3-build python3-installer python3-meson-python
From 32c5fab80df49014daeb8adaabc22034b810baa7 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 19/24] python3-scikit-learn: update to 1.5.0.
---
.../patches/numpy-version.patch | 11 ----------
srcpkgs/python3-scikit-learn/template | 20 +++++++------------
2 files changed, 7 insertions(+), 24 deletions(-)
delete mode 100644 srcpkgs/python3-scikit-learn/patches/numpy-version.patch
diff --git a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch b/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
deleted file mode 100644
index 0ffb53e3433e9b..00000000000000
--- a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -9,7 +9,7 @@
- # wheels on PyPI
- #
- # see: https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
-- "oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
-+ "numpy>=1.23.2; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
- # For CPython 3.10 under Windows, SciPy requires NumPy 1.22.3 while the
- # oldest supported NumPy is defined as 1.21.6. We therefore need to force
- # it for this specific configuration. For details, see
diff --git a/srcpkgs/python3-scikit-learn/template b/srcpkgs/python3-scikit-learn/template
index a6364f089c4f4d..c0983fe4624dd3 100644
--- a/srcpkgs/python3-scikit-learn/template
+++ b/srcpkgs/python3-scikit-learn/template
@@ -1,27 +1,21 @@
# Template file for 'python3-scikit-learn'
pkgname=python3-scikit-learn
-version=1.3.0
-revision=2
+version=1.5.0
+revision=1
build_style=python3-pep517
-hostmakedepends="python3-setuptools python3-Cython python3-numpy python3-scipy
- python3-wheel"
-makedepends="python3-devel libgomp-devel"
+build_helper="numpy meson"
+hostmakedepends="python3-Cython python3-numpy python3-scipy
+ python3-meson-python pkg-config"
+makedepends="python3-devel python3-numpy libgomp-devel"
depends="python3-numpy python3-scipy python3-joblib python3-threadpoolctl"
short_desc="Python3 modules for machine learning and data mining"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-3-Clause"
homepage="https://scikit-learn.org/"
distfiles="https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz"
-checksum=ead129f466a0859555ce4f41280ae06623ef3255efff0b1692c57f15e39767b5
+checksum=cd2aac2b566c7e740d34aabb4737864c74ba33c29aad7101fbf1bab2931c02dc
make_check=no # tests don't work properly unless package is installed
-export SKLEARN_BUILD_PARALLEL="${XBPS_MAKEJOBS}"
-
-if [ "$CROSS_BUILD" ]; then
- # Without this, setup.py tries to run a target executable
- export PYTHON_CROSSENV=1
-fi
-
post_install() {
vlicense COPYING
}
From 447254e80dea03def12b85153495ed269ae0d7c5 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 20/24] python3-scipy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-scipy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scipy/template b/srcpkgs/python3-scipy/template
index 41cf9ddb873aab..e35cd25b4595c6 100644
--- a/srcpkgs/python3-scipy/template
+++ b/srcpkgs/python3-scipy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scipy'
pkgname=python3-scipy
version=1.14.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
# SciPy imposes strict and unnecessary restrictions on build dependencies
From fe525ab24558f89f6836ae7e5d5b17db9a8d0039 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 21/24] python3-tables: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-tables/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-tables/template b/srcpkgs/python3-tables/template
index 81b7351b972649..38c93292ea4bf8 100644
--- a/srcpkgs/python3-tables/template
+++ b/srcpkgs/python3-tables/template
@@ -1,7 +1,7 @@
# Template file for 'python3-tables'
pkgname=python3-tables
version=3.7.0
-revision=3
+revision=4
build_style=python3-module
build_helper=numpy
# XXX: c-blosc (using internal for now)
From 8c05a4f57ced6c93531302eabf1a8b3c6eed0ca8 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 22/24] python3-vispy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-vispy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-vispy/template b/srcpkgs/python3-vispy/template
index 60dc8ae4b82996..6411756abc3b71 100644
--- a/srcpkgs/python3-vispy/template
+++ b/srcpkgs/python3-vispy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-vispy'
pkgname=python3-vispy
version=0.6.1
-revision=8
+revision=9
build_style=python3-module
build_helper=numpy
hostmakedepends="python3-setuptools python3-Cython python3-numpy"
From 52ecd79293f382eb37ad31fd4b0b80e34d86fd78 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 23/24] urh: rebuild against python3-numpy-2.0.0
---
srcpkgs/urh/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/urh/template b/srcpkgs/urh/template
index f86a7ea530c762..7c109b044b1462 100644
--- a/srcpkgs/urh/template
+++ b/srcpkgs/urh/template
@@ -1,7 +1,7 @@
# Template file for 'urh'
pkgname=urh
version=2.9.6
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="python3-devel python3-PyQt5 libairspy-devel librtlsdr-devel
From 1669d8839b974a01bb5f27ff31263524b846acf9 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:08:40 -0400
Subject: [PATCH 24/24] wxPython: fix runtime dependencies
---
srcpkgs/wxPython/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/wxPython/template b/srcpkgs/wxPython/template
index 7f4c8a21e18589..0d29630771a48f 100644
--- a/srcpkgs/wxPython/template
+++ b/srcpkgs/wxPython/template
@@ -1,14 +1,14 @@
# Template file for 'wxPython'
pkgname=wxPython
version=4.2.1
-revision=4
+revision=5
build_style=python3-module
make_build_args="--skip-build"
make_install_args="--skip-build"
hostmakedepends="pkg-config python3-setuptools python3-pathlib2 python3-Cython0.29"
makedepends="python3-devel wxWidgets-gtk3-devel SDL2-devel
gst-plugins-base1-devel"
-depends="python3 python3-six python3-numpy python3-Pillow"
+depends="python3-six"
short_desc="Python bindings for wxWidgets"
maintainer="Orphaned <orphan@voidlinux.org>"
license="custom:wxWindows"
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [PR PATCH] [Updated] [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (8 preceding siblings ...)
2024-07-02 18:11 ` ahesford
@ 2024-07-03 13:56 ` ahesford
2024-07-03 14:09 ` ahesford
2024-07-08 17:29 ` ahesford
11 siblings, 0 replies; 13+ messages in thread
From: ahesford @ 2024-07-03 13:56 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2360 bytes --]
There is an updated pull request by ahesford against master on the void-packages repository
https://github.com/ahesford/void-packages numpy
https://github.com/void-linux/void-packages/pull/51077
[WIP] NumPy 2.0
This update removes a lot of long-deprecated interfaces and probably breaks several dependants. It will need careful testing.
[ci skip]
The following packages ship shared libraries; most require a rebuild to even be importable, and the rest are included just to be sure (each will be ticked as it is tested for compatibility):
- [ ] gnuradio
- [ ] mypaint
- [ ] opencv
- [ ] plplot
- [x] python3-Bottleneck (a single test failure for memory leaks appears unrelated to NumPy)
- [x] python3-PyOpenGL-accelerate (its only dependant doesn't require NumPy support, so I'll rebuild without support)
- [x] python3-h5py
- [x] python3-matplotlib (basic use seems to work)
- [x] python3-numexpr
- [ ] python3-numpy-stl (several test failures related to closeness tests that aren't quite as close as expected; also, a few interface changes leak into tests)
- [ ] python3-pandas
- [ ] python3-pyFFTW (several test failures, with implications beyond NumPy; needs more investigation)
- [ ] python3-pyopencl
- [x] python3-pywt
- [ ] python3-scikit-image
- [ ] python3-scikit-learn
- [ ] python3-scipy
- [ ] python3-tables
- [ ] python3-vispy
- [ ] urh
- [x] wxPython (doesn't actually depend on NumPy, so it will be rebuilt to correct dependencies)
The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
- DisplayCAL
The following packages do not appear to build Python extensions and should not require a rebuild, but some tests should be performed to ensure basic functionality with NumPy 2.0:
- [ ] bCNC
- [ ] flowblade
- [ ] grass
- [ ] hydrus
- [ ] inkscape
- [ ] openrazer-meta
- [ ] pymol
- [ ] python3-bokeh
- [ ] python3-imageio
- [ ] python3-joblib
- [ ] python3-niapy
- [ ] python3-openai
- [ ] python3-pgzero
- [ ] python3-pycollada
- [ ] python3-pyqtgraph
- [x] python3-pytools
- [ ] python3-seaborn
- [ ] python3-tifffile
- [ ] python3-trimesh
- [x] pythran (compiles python3-scipy and python3-scikit-image just fine)
- [ ] qgis
- [ ] xdot
A patch file from https://github.com/void-linux/void-packages/pull/51077.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-numpy-51077.patch --]
[-- Type: text/x-diff, Size: 35760 bytes --]
From 1b520369f80a8f63d02cabbf0bcff74424e35483 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:07:16 -0400
Subject: [PATCH 01/24] python3-numpy: update to 2.0.0.
---
.../python3-numpy/files/fenv-constants.patch | 10 ++++-----
.../patches/fix-pytest-warning.patch | 8 -------
.../patches/version-relaxation.patch | 14 ------------
srcpkgs/python3-numpy/template | 22 +++++++++++--------
4 files changed, 18 insertions(+), 36 deletions(-)
delete mode 100644 srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
delete mode 100644 srcpkgs/python3-numpy/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-numpy/files/fenv-constants.patch b/srcpkgs/python3-numpy/files/fenv-constants.patch
index 987ad4e346ffa5..075cac8a0820c6 100644
--- a/srcpkgs/python3-numpy/files/fenv-constants.patch
+++ b/srcpkgs/python3-numpy/files/fenv-constants.patch
@@ -1,11 +1,11 @@
---- numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:53:51.998825328 +1000
-+++ numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:54:03.611889518 +1000
+--- numpy/_core/src/npymath/ieee754.c.src.orig 2024-07-02 11:50:48.519261116 -0400
++++ numpy/_core/src/npymath/ieee754.c.src 2024-07-02 11:51:06.336360850 -0400
@@ -8,6 +8,8 @@
#include "npy_math_private.h"
#include "numpy/utils.h"
+#include "fenv-constants.h"
+
- #ifndef HAVE_COPYSIGN
- double npy_copysign(double x, double y)
- {
+ /*
+ The below code is provided for compilers which do not yet provide C11 compatibility (gcc 4.5 and older)
+ */
diff --git a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch b/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
deleted file mode 100644
index 990ab80197542c..00000000000000
--- a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- a/pytest.ini 2023-06-16 22:48:37.211072200 -0300
-+++ b/pytest.ini 2023-06-19 22:52:00.230063231 -0300
-@@ -27,3 +27,5 @@
- ignore:\n\n `numpy.distutils`:DeprecationWarning
- # Ignore mypy >= 0.971 DeprecationWarnings
- ignore:path is deprecated\. Use files\(\) instead:DeprecationWarning:mypy
-+# Ignore warning raised when importing setuptools.command.
-+ ignore:pkg_resources is deprecated as an API:DeprecationWarning
diff --git a/srcpkgs/python3-numpy/patches/version-relaxation.patch b/srcpkgs/python3-numpy/patches/version-relaxation.patch
deleted file mode 100644
index f36972e5cc96a7..00000000000000
--- a/srcpkgs/python3-numpy/patches/version-relaxation.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-As with SciPy, NumPy abuses specifications of *build requirements* as a means
-to control the environment under which wheels are built for distribution.
-
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -2,7 +2,7 @@
- build-backend = "mesonpy"
- requires = [
- "Cython>=0.29.34,<3.1",
-- "meson-python>=0.15.0,<0.16.0",
-+ "meson-python>=0.15.0",
- ]
-
- [project]
diff --git a/srcpkgs/python3-numpy/template b/srcpkgs/python3-numpy/template
index e6b6accb42ab4a..2adde47160b768 100644
--- a/srcpkgs/python3-numpy/template
+++ b/srcpkgs/python3-numpy/template
@@ -1,6 +1,6 @@
# Template file for 'python3-numpy'
pkgname=python3-numpy
-version=1.26.4
+version=2.0.0
revision=1
build_style=python3-pep517
build_helper="meson qemu"
@@ -19,7 +19,7 @@ license="BSD-3-Clause"
homepage="https://www.numpy.org/"
changelog="https://github.com/numpy/numpy/releases"
distfiles="${PYPI_SITE}/n/numpy/numpy-${version}.tar.gz"
-checksum=2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+checksum=cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
alternatives="numpy:f2py:/usr/bin/f2py3"
build_options="openblas"
@@ -42,14 +42,10 @@ fi
post_patch() {
case "${XBPS_TARGET_MACHINE}" in
armv5tel-musl)
- cp "${FILESDIR}/fenv-constants.h" numpy/core/src/npymath/
+ cp "${FILESDIR}/fenv-constants.h" numpy/_core/src/npymath/
patch -Np0 -i "${FILESDIR}/fenv-constants.patch"
;;
esac
-
- if [ "$XBPS_TARGET_LIBC" = musl ] ; then
- vsed -i 's|"backtrace",||' numpy/core/setup_common.py
- fi
}
do_check() {
@@ -77,9 +73,17 @@ do_check() {
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer --destdir "${testdir}" dist/numpy*.whl
+ cd "${testdir}"
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
- python3 runtests.py --no-build -- \
- -n "${XBPS_MAKEJOBS}" ${_skip+-k "not(${_skip#or})"}
+ python3 <<-EOF
+ import numpy
+ numpy.test(
+ extra_argv=[
+ '-n', '${XBPS_MAKEJOBS}',
+ ${_skip+'-k', 'not(${_skip#or})'}
+ ],
+ )
+ EOF
}
post_install() {
From b22234fa3c25d083017f8c3f746fa7c69b7dc12a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 15:09:53 -0400
Subject: [PATCH 02/24] common/build-helper/numpy.sh: update paths for
python3-numpy-2.0.0
---
common/build-helper/numpy.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/common/build-helper/numpy.sh b/common/build-helper/numpy.sh
index e0856dbca7cf3c..0adce85e151fde 100644
--- a/common/build-helper/numpy.sh
+++ b/common/build-helper/numpy.sh
@@ -19,8 +19,8 @@ fi
# python3-setuptools finds numpy libs and headers on the host first;
# adding search paths up front allows the target to take priority
-CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
-LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/lib"
+CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
+LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/lib"
LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/random/lib"
# distutils from python3-numpy looks to environment variables F77 and
@@ -45,7 +45,7 @@ if [[ "${build_helper}" = *meson* ]]; then
mkdir -p "${XBPS_WRAPPERDIR}/meson"
cat > "${_npy_meson_cross}" <<-EOF
[properties]
- numpy-include-dir = '${_cross_py_site}/numpy/core/include'
+ numpy-include-dir = '${_cross_py_site}/numpy/_core/include'
pythran-include-dir = '${_cross_py_site}/pythran'
EOF
fi
From 4a7fe482e418fa779c11ab970a12fc515adc81b9 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:18:04 -0400
Subject: [PATCH 03/24] gnuradio: rebuild against python3-numpy-2.0.0
---
srcpkgs/gnuradio/template | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/gnuradio/template b/srcpkgs/gnuradio/template
index 58127cedd3ddc6..f34450d7baab1a 100644
--- a/srcpkgs/gnuradio/template
+++ b/srcpkgs/gnuradio/template
@@ -1,8 +1,9 @@
# Template file for 'gnuradio'
pkgname=gnuradio
version=3.10.8.0
-revision=1
+revision=2
build_style=cmake
+build_helper="python3"
conf_files="/etc/gnuradio/conf.d/*"
configure_args="-DMATHJAX2_USE_ROOT=/usr/share/mathjax
-DZEROMQ_INCLUDE_DIRS=${XBPS_CROSS_BASE}/usr/include
@@ -27,7 +28,7 @@ python_version=3
if [ "$CROSS_BUILD" ]; then
# CMake fails when cross-compiling.
- configure_args+=" -DENABLE_TESTING=OFF"
+ configure_args+=" -DENABLE_TESTING=OFF -DCMAKE_CROSSCOMPILING=ON"
fi
if [ "${XBPS_TARGET_MACHINE%-musl}" = "i686" ]; then
From dc7a1a1e3c94eca9583e3b3a4e4aed63fa299d9e Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:13:46 -0400
Subject: [PATCH 04/24] mypaint: rebuild against python3-numpy-2.0.0
---
srcpkgs/mypaint/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/mypaint/template b/srcpkgs/mypaint/template
index 1a1d995bd7e7cd..d5fdb8d67cf5ca 100644
--- a/srcpkgs/mypaint/template
+++ b/srcpkgs/mypaint/template
@@ -1,7 +1,7 @@
# Template file for 'mypaint'
pkgname=mypaint
version=2.0.1
-revision=5
+revision=6
build_style=python3-module
pycompile_dirs="/usr/share/mypaint"
hostmakedepends="swig pkg-config gettext python3-setuptools python3-numpy python3"
From 46dccb8b24657c97a3a04c6d8cf2e287b130fe6a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 05/24] opencv: rebuild against python3-numpy-2.0.0
---
srcpkgs/opencv/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/opencv/template b/srcpkgs/opencv/template
index aea4bfc3a265cf..0022fd863cc192 100644
--- a/srcpkgs/opencv/template
+++ b/srcpkgs/opencv/template
@@ -1,7 +1,7 @@
# Template file for 'opencv'
pkgname=opencv
version=4.6.0
-revision=6
+revision=7
create_wrksrc=yes
build_wrksrc=${pkgname}-${version}
build_style=cmake
@@ -33,7 +33,7 @@ make_check=no
if [ "$CROSS_BUILD" ]; then
# Tell opencv where to find python and numpy
configure_args+=" -DPYTHON3_INCLUDE_PATH=${XBPS_CROSS_BASE}/${py3_inc}
- -DPYTHON3_NUMPY_INCLUDE_DIRS=${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
+ -DPYTHON3_NUMPY_INCLUDE_DIRS=${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
fi
case "$XBPS_TARGET_MACHINE" in
From dccbad8354279dafbf114140356f399bba6f6781 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 06/24] plplot: rebuild against python3-numpy-2.0.0
---
srcpkgs/plplot/template | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/plplot/template b/srcpkgs/plplot/template
index a80e12310e9338..b17eee96f21240 100644
--- a/srcpkgs/plplot/template
+++ b/srcpkgs/plplot/template
@@ -1,11 +1,14 @@
# Template file for 'plplot'
pkgname=plplot
version=5.15.0
-revision=5
+revision=6
build_style=cmake
-build_helper="qemu"
-configure_args="-DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
- -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3"
+build_helper="qemu numpy"
+configure_args="
+ -DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
+ -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3
+ -DCMAKE_C_FLAGS=-I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include
+"
hostmakedepends="pkg-config gcc-fortran swig freefont-ttf
lua53 python3-numpy python3-setuptools plplot-devel"
makedepends="pango-devel cairo-devel freetype-devel libqhull-devel
From be1852334d9268d992b5ab510b385e14478a0594 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:07:21 -0400
Subject: [PATCH 07/24] python3-Bottleneck: update to 1.4.0.
---
srcpkgs/python3-Bottleneck/template | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/srcpkgs/python3-Bottleneck/template b/srcpkgs/python3-Bottleneck/template
index afafcd572ddb58..1c9400da55a2ec 100644
--- a/srcpkgs/python3-Bottleneck/template
+++ b/srcpkgs/python3-Bottleneck/template
@@ -1,9 +1,10 @@
# Template file for 'python3-Bottleneck'
pkgname=python3-Bottleneck
-version=1.3.7
+version=1.4.0
revision=1
-build_style=python3-module
-hostmakedepends="python3-setuptools python3-numpy"
+build_style=python3-pep517
+make_check_target=".xbps-testdir/*/${py3_sitelib}/bottleneck/tests"
+hostmakedepends="python3-setuptools python3-versioneer python3-wheel python3-numpy"
makedepends="python3-devel"
depends="python3-numpy"
checkdepends="python3-pytest-xdist $depends"
@@ -11,8 +12,8 @@ short_desc="Fast NumPy array functions written in C (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-2-Clause"
homepage="https://github.com/kwgoodman/bottleneck"
-distfiles="${PYPI_SITE}/B/Bottleneck/Bottleneck-${version}.tar.gz"
-checksum=e1467e373ad469da340ed0ff283214d6531cc08bfdca2083361a3aa6470681f8
+distfiles="${PYPI_SITE}/b/bottleneck/bottleneck-${version}.tar.gz"
+checksum=beb36df519b8709e7d357c0c9639b03b885ca6355bbf5e53752c685de51605b8
post_install() {
rm -f ${DESTDIR}/usr/lib/python*/site-packages/bottleneck/LICENSE
From 4460680c68a1b8d9928fbf7619f4dbbb79912319 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:06:53 -0400
Subject: [PATCH 08/24] python3-PyOpenGL-accelerate: rebuild without
python3-numpy
---
srcpkgs/python3-PyOpenGL-accelerate/template | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/srcpkgs/python3-PyOpenGL-accelerate/template b/srcpkgs/python3-PyOpenGL-accelerate/template
index cec8b8c0bc6f4d..2161cd9b433d47 100644
--- a/srcpkgs/python3-PyOpenGL-accelerate/template
+++ b/srcpkgs/python3-PyOpenGL-accelerate/template
@@ -1,11 +1,11 @@
# Template file for 'python3-PyOpenGL-accelerate'
pkgname=python3-PyOpenGL-accelerate
version=3.1.7
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython"
-makedepends="python3-devel python3-numpy"
-depends="python3-numpy"
+makedepends="python3-devel"
+depends="python3"
short_desc="Acceleration code for PyOpenGL (Python3)"
maintainer="Alain Kalker <a.c.kalker@gmail.com>"
license="BSD-3-Clause"
From 247963a5719865c8bc4b894a9dff5e880647e2c7 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:33:54 -0400
Subject: [PATCH 09/24] python3-h5py: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-h5py/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-h5py/template b/srcpkgs/python3-h5py/template
index e71350fbf60ecb..c77df7c1123719 100644
--- a/srcpkgs/python3-h5py/template
+++ b/srcpkgs/python3-h5py/template
@@ -1,7 +1,7 @@
# Template file for 'python3-h5py'
pkgname=python3-h5py
version=3.11.0
-revision=1
+revision=2
build_style=python3-module
build_helper="numpy"
hostmakedepends="python3-setuptools python3-Cython0.29 python3-pkgconfig"
From 52813ebb1ae452c73c24288b3c7c59bd9866272e Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:56:19 -0400
Subject: [PATCH 10/24] python3-matplotlib: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-matplotlib/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-matplotlib/template b/srcpkgs/python3-matplotlib/template
index 13f9b255ad16ad..3bc99f9f4de763 100644
--- a/srcpkgs/python3-matplotlib/template
+++ b/srcpkgs/python3-matplotlib/template
@@ -1,7 +1,7 @@
# Template file for 'python3-matplotlib'
pkgname=python3-matplotlib
version=3.9.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_build_args="-Csetup-args=-Dsystem-freetype=true
From 09050738a673ada92294a22217889981ed817666 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 11/24] python3-numexpr: update to 2.10.1.
---
srcpkgs/python3-numexpr/template | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/srcpkgs/python3-numexpr/template b/srcpkgs/python3-numexpr/template
index 4e4b9dc3177840..d148218d101708 100644
--- a/srcpkgs/python3-numexpr/template
+++ b/srcpkgs/python3-numexpr/template
@@ -1,19 +1,20 @@
# Template file for 'python3-numexpr'
pkgname=python3-numexpr
-version=2.8.3
-revision=3
-build_style=python3-module
-build_helper=numpy
-hostmakedepends="python3-wheel"
+version=2.10.1
+revision=1
+build_style=python3-pep517
+build_helper="numpy"
+make_check_args="-k not(test_max_threads_unset)"
+hostmakedepends="python3-setuptools python3-wheel"
makedepends="python3-devel python3-numpy"
-depends="python3-numpy python3-packaging"
-checkdepends="${depends} python3-pytest-xdist"
+depends="python3-numpy"
+checkdepends="${depends} python3-pytest"
short_desc="Fast numerical expression evaluator for NumPy (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="MIT"
homepage="https://github.com/pydata/numexpr"
distfiles="https://github.com/pydata/numexpr/archive/v${version}.tar.gz"
-checksum=389ceefca74eff30ec3fd03fc4c3b7ab3df8f22d1f235117a392ce702ed208c0
+checksum=e499bd19a7fd9803d5ec1b2cff2e0a11a2f01a109d5326e5a09eff590448c793
pre_check() {
python3 setup.py build_ext --inplace
From bd5e3c6bde23542fa5f4bd8cae8a792cb81c2c08 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 12/24] python3-numpy-stl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-numpy-stl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-numpy-stl/template b/srcpkgs/python3-numpy-stl/template
index 9257dca68817b6..72a7448c990aad 100644
--- a/srcpkgs/python3-numpy-stl/template
+++ b/srcpkgs/python3-numpy-stl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-numpy-stl'
pkgname=python3-numpy-stl
version=2.17.1
-revision=3
+revision=4
build_style=python3-module
build_helper="numpy"
# skip flake8 tests
From 18fe32027ee7f27dbaa6065f7fc4585a98e31f06 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:02 -0400
Subject: [PATCH 13/24] python3-pandas: update to 2.2.2.
---
.../patches/version-relaxation.patch | 24 -------------------
srcpkgs/python3-pandas/template | 10 ++++----
2 files changed, 6 insertions(+), 28 deletions(-)
delete mode 100644 srcpkgs/python3-pandas/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-pandas/patches/version-relaxation.patch b/srcpkgs/python3-pandas/patches/version-relaxation.patch
deleted file mode 100644
index c94e5fa170eebe..00000000000000
--- a/srcpkgs/python3-pandas/patches/version-relaxation.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./pyproject.toml.orig 2023-10-02 14:33:56.359267774 -0400
-+++ ./pyproject.toml 2023-10-02 14:35:29.662565059 -0400
-@@ -2,8 +2,8 @@
- # Minimum requirements for the build system to execute.
- # See https://github.com/scipy/scipy/pull/12940 for the AIX issue.
- requires = [
-- "meson-python==0.13.1",
-- "meson==1.2.1",
-+ "meson-python",
-+ "meson",
- "wheel",
- "Cython>=0.29.33,<3", # Note: sync with setup.py, environment.yml and asv.conf.json
- # Note: numpy 1.25 has a backwards compatible C API by default
---- ./meson.build.orig 2023-10-02 14:42:02.161816469 -0400
-+++ ./meson.build 2023-09-20 15:24:13.000000000 -0400
-@@ -4,7 +4,7 @@
- 'c', 'cpp', 'cython',
- version: run_command(['generate_version.py', '--print'], check: true).stdout().strip(),
- license: 'BSD-3',
-- meson_version: '>=1.2.1',
-+ meson_version: '>=1.2.0',
- default_options: [
- 'buildtype=release',
- 'c_std=c99'
diff --git a/srcpkgs/python3-pandas/template b/srcpkgs/python3-pandas/template
index c8e610dee33729..79e6f8462349cd 100644
--- a/srcpkgs/python3-pandas/template
+++ b/srcpkgs/python3-pandas/template
@@ -1,10 +1,12 @@
# Template file for 'python3-pandas'
pkgname=python3-pandas
-version=2.1.4
-revision=1
+version=2.2.2
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
-hostmakedepends="python3-meson-python python3-wheel python3-Cython0.29
+# Pandas imposes strict and unnecessary restrictions on build dependencies
+make_build_args="--skip-dependency-check"
+hostmakedepends="python3-meson-python python3-wheel python3-Cython
python3-numpy python3-versioneer pkg-config"
makedepends="python3-devel python3-numpy python3-dateutil python3-pytz"
depends="python3-numpy python3-dateutil python3-pytz"
@@ -14,7 +16,7 @@ license="BSD-3-Clause"
homepage="https://pandas.pydata.org/"
changelog="https://pandas.pydata.org/pandas-docs/stable/whatsnew/index.html"
distfiles="https://github.com/pandas-dev/pandas/archive/v${version}.tar.gz"
-checksum=00e0b049bac3d60c5701cae1f2fe57314f6ab8ae302b28953d4f9337817f6fc1
+checksum=79bc6fb5505afd27875c93fec27cece74318470c4e274ec7ef48b16f046dc006
# Builds seem to sometimes have missing symbol problems;
# the intermittent nature suggests this might be a race
disable_parallel_build=yes
From 4962ac5b107b5427aab24532cb5dde5766c17807 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:15:55 -0400
Subject: [PATCH 14/24] python3-pyFFTW: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyFFTW/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyFFTW/template b/srcpkgs/python3-pyFFTW/template
index ba1f6fc9e158ab..414b77b639ada5 100644
--- a/srcpkgs/python3-pyFFTW/template
+++ b/srcpkgs/python3-pyFFTW/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyFFTW'
pkgname=python3-pyFFTW
version=0.13.1
-revision=2
+revision=3
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="fftw-devel python3-devel"
From 18a1d570feaed0d0083f7ae801910548780428a1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 15/24] python3-pyopencl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyopencl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyopencl/template b/srcpkgs/python3-pyopencl/template
index f57ba9421ed35a..09320616592f80 100644
--- a/srcpkgs/python3-pyopencl/template
+++ b/srcpkgs/python3-pyopencl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyopencl'
pkgname=python3-pyopencl
version=2024.2.7
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel python3-numpy
python3-scikit-build-core cmake ninja python3-nanobind"
From 677a67e528ad5121264687bbe9b8eee1fec15e52 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 16/24] python3-pywt: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pywt/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pywt/template b/srcpkgs/python3-pywt/template
index b4890de4450b45..9930684cedcff0 100644
--- a/srcpkgs/python3-pywt/template
+++ b/srcpkgs/python3-pywt/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pywt'
pkgname=python3-pywt
version=1.6.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_check_target=".xbps-testdir/*/${py3_sitelib}/pywt/tests"
From a687f6070179674b8e3efa7f7decfd45b4a6856d Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 17:03:26 -0400
Subject: [PATCH 17/24] pythran: fix required gast version
---
srcpkgs/pythran/patches/gast-0.6.patch | 76 ++++++++++++++++++++++++++
srcpkgs/pythran/template | 2 +-
2 files changed, 77 insertions(+), 1 deletion(-)
create mode 100644 srcpkgs/pythran/patches/gast-0.6.patch
diff --git a/srcpkgs/pythran/patches/gast-0.6.patch b/srcpkgs/pythran/patches/gast-0.6.patch
new file mode 100644
index 00000000000000..87dfcdcf450bce
--- /dev/null
+++ b/srcpkgs/pythran/patches/gast-0.6.patch
@@ -0,0 +1,76 @@
+From 840a0e706ec39963aec6bcd1f118bf33177c20b4 Mon Sep 17 00:00:00 2001
+From: serge-sans-paille <serge.guelton@telecom-bretagne.eu>
+Date: Sat, 29 Jun 2024 19:13:02 +0200
+Subject: [PATCH] Bump gast requirement to 0.6.0
+
+This mostly helps for harmonious behavior wrt. gast.dump
+---
+ docs/TUTORIAL.rst | 8 ++++----
+ pythran/utils.py | 2 +-
+ requirements.txt | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/docs/TUTORIAL.rst b/docs/TUTORIAL.rst
+index 09f6902f9..7692547eb 100644
+--- a/docs/TUTORIAL.rst
++++ b/docs/TUTORIAL.rst
+@@ -20,7 +20,7 @@ Python ships a standard module, ``ast`` to turn Python code into an AST. For ins
+ >>> code = "a=1"
+ >>> tree = ast.parse(code) # turn the code into an AST
+ >>> print(ast.dump(tree)) # view it as a string
+- Module(body=[Assign(targets=[Name(id='a', ctx=Store(), annotation=None, type_comment=None)], value=Constant(value=1, kind=None), type_comment=None)], type_ignores=[])
++ Module(body=[Assign(targets=[Name(id='a', ctx=Store())], value=Constant(value=1, kind=None))])
+
+ Deciphering the above line, one learns that the single assignment is parsed as
+ a module containing a single statement, which is an assignment to a single
+@@ -33,7 +33,7 @@ Eventually, one needs to parse more complex codes, and things get a bit more cry
+ ... return n if n< 2 else fib(n-1) + fib(n-2)"""
+ >>> tree = ast.parse(fib_src)
+ >>> print(ast.dump(tree))
+- Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param(), annotation=None, type_comment=None)], posonlyargs=[], vararg=None, kwonlyargs=[], kw_defaults=[], kwarg=None, defaults=[]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load(), annotation=None, type_comment=None), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=1, kind=None))], keywords=[]), op=Add(), right=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=2, kind=None))], keywords=[]))))], decorator_list=[], returns=None, type_comment=None)], type_ignores=[])
++ Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param())]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load()), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load()), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=1, kind=None))]), op=Add(), right=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=2, kind=None))]))))])])
+
+ The idea remains the same. The whole Python syntax is described in
+ http://docs.python.org/2/library/ast.html and is worth a glance, otherwise
+@@ -199,7 +199,7 @@ constant expressions. In the previous code, there is only two constant
+
+ >>> ce = pm.gather(analyses.ConstantExpressions, tree)
+ >>> sorted(map(ast.dump, ce))
+- ["Attribute(value=Name(id='math', ctx=Load(), annotation=None, type_comment=None), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
++ ["Attribute(value=Name(id='math', ctx=Load()), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
+
+ One of the most critical analyse of Pythran is the points-to analysis. There
+ are two flavors of this analyse, one that computes an over-set of the aliased
+@@ -210,7 +210,7 @@ variable, and one that computes an under set. ``Aliases`` computes an over-set::
+ >>> al = pm.gather(analyses.Aliases, tree)
+ >>> returned = tree.body[-1].body[-1].value
+ >>> print(ast.dump(returned))
+- Name(id='b', ctx=Load(), annotation=None, type_comment=None)
++ Name(id='b', ctx=Load())
+ >>> sorted(a.id for a in al[returned])
+ ['c', 'd']
+
+diff --git a/pythran/utils.py b/pythran/utils.py
+index 2d7a67327..55a7e8ad6 100644
+--- a/pythran/utils.py
++++ b/pythran/utils.py
+@@ -106,7 +106,7 @@ def get_variable(assignable):
+ ... slice=ast.Name('j', ast.Load(), None, None),
+ ... ctx=ast.Load())
+ >>> ast.dump(get_variable(ref))
+- "Name(id='a', ctx=Load(), annotation=None, type_comment=None)"
++ "Name(id='a', ctx=Load())"
+ """
+ msg = "Only name and subscript can be assigned."
+ assert isinstance(assignable, (ast.Name, ast.Subscript)), msg
+diff --git a/requirements.txt b/requirements.txt
+index fd6a738e5..c7a25c52a 100644
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -1,5 +1,5 @@
+ ply>=3.4
+ setuptools
+-gast~=0.5.0
++gast~=0.6.0
+ numpy
+ beniget~=0.4.0
diff --git a/srcpkgs/pythran/template b/srcpkgs/pythran/template
index a717256074d6d3..9a8761a767f67e 100644
--- a/srcpkgs/pythran/template
+++ b/srcpkgs/pythran/template
@@ -1,7 +1,7 @@
# Template file for 'pythran'
pkgname=pythran
version=0.16.1
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel"
depends="python3-ply python3-gast python3-beniget python3-numpy
From 51f3e36e144d0106d0ca15162741ab9bb53e4acb Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 18/24] python3-scikit-image: rebuild against
python3-numpy-2.0.0
---
srcpkgs/python3-scikit-image/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scikit-image/template b/srcpkgs/python3-scikit-image/template
index 144193cd39b330..914aa23ce673f2 100644
--- a/srcpkgs/python3-scikit-image/template
+++ b/srcpkgs/python3-scikit-image/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scikit-image'
pkgname=python3-scikit-image
version=0.24.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
hostmakedepends="python3-build python3-installer python3-meson-python
From 3bbefa8a206cadef4e81aee3e60b9313b5d91c11 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 19/24] python3-scikit-learn: update to 1.5.0.
---
.../patches/numpy-version.patch | 11 ----------
srcpkgs/python3-scikit-learn/template | 20 +++++++------------
2 files changed, 7 insertions(+), 24 deletions(-)
delete mode 100644 srcpkgs/python3-scikit-learn/patches/numpy-version.patch
diff --git a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch b/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
deleted file mode 100644
index 0ffb53e3433e9b..00000000000000
--- a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -9,7 +9,7 @@
- # wheels on PyPI
- #
- # see: https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
-- "oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
-+ "numpy>=1.23.2; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
- # For CPython 3.10 under Windows, SciPy requires NumPy 1.22.3 while the
- # oldest supported NumPy is defined as 1.21.6. We therefore need to force
- # it for this specific configuration. For details, see
diff --git a/srcpkgs/python3-scikit-learn/template b/srcpkgs/python3-scikit-learn/template
index a6364f089c4f4d..c0983fe4624dd3 100644
--- a/srcpkgs/python3-scikit-learn/template
+++ b/srcpkgs/python3-scikit-learn/template
@@ -1,27 +1,21 @@
# Template file for 'python3-scikit-learn'
pkgname=python3-scikit-learn
-version=1.3.0
-revision=2
+version=1.5.0
+revision=1
build_style=python3-pep517
-hostmakedepends="python3-setuptools python3-Cython python3-numpy python3-scipy
- python3-wheel"
-makedepends="python3-devel libgomp-devel"
+build_helper="numpy meson"
+hostmakedepends="python3-Cython python3-numpy python3-scipy
+ python3-meson-python pkg-config"
+makedepends="python3-devel python3-numpy libgomp-devel"
depends="python3-numpy python3-scipy python3-joblib python3-threadpoolctl"
short_desc="Python3 modules for machine learning and data mining"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-3-Clause"
homepage="https://scikit-learn.org/"
distfiles="https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz"
-checksum=ead129f466a0859555ce4f41280ae06623ef3255efff0b1692c57f15e39767b5
+checksum=cd2aac2b566c7e740d34aabb4737864c74ba33c29aad7101fbf1bab2931c02dc
make_check=no # tests don't work properly unless package is installed
-export SKLEARN_BUILD_PARALLEL="${XBPS_MAKEJOBS}"
-
-if [ "$CROSS_BUILD" ]; then
- # Without this, setup.py tries to run a target executable
- export PYTHON_CROSSENV=1
-fi
-
post_install() {
vlicense COPYING
}
From d51713591868d88cd1674ff34b7427cfe1fd7a83 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 20/24] python3-scipy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-scipy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scipy/template b/srcpkgs/python3-scipy/template
index 41cf9ddb873aab..e35cd25b4595c6 100644
--- a/srcpkgs/python3-scipy/template
+++ b/srcpkgs/python3-scipy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scipy'
pkgname=python3-scipy
version=1.14.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
# SciPy imposes strict and unnecessary restrictions on build dependencies
From 03f9a7f5cec619240aa95c04afe23cd1378c86b4 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 21/24] python3-tables: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-tables/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-tables/template b/srcpkgs/python3-tables/template
index 81b7351b972649..38c93292ea4bf8 100644
--- a/srcpkgs/python3-tables/template
+++ b/srcpkgs/python3-tables/template
@@ -1,7 +1,7 @@
# Template file for 'python3-tables'
pkgname=python3-tables
version=3.7.0
-revision=3
+revision=4
build_style=python3-module
build_helper=numpy
# XXX: c-blosc (using internal for now)
From d90e19c342430440f50e6e37c2497193d083bb0a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 22/24] python3-vispy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-vispy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-vispy/template b/srcpkgs/python3-vispy/template
index 60dc8ae4b82996..6411756abc3b71 100644
--- a/srcpkgs/python3-vispy/template
+++ b/srcpkgs/python3-vispy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-vispy'
pkgname=python3-vispy
version=0.6.1
-revision=8
+revision=9
build_style=python3-module
build_helper=numpy
hostmakedepends="python3-setuptools python3-Cython python3-numpy"
From 4084ab42c56f40095f5060b9ce262dcb6f129be6 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 23/24] urh: rebuild against python3-numpy-2.0.0
---
srcpkgs/urh/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/urh/template b/srcpkgs/urh/template
index f86a7ea530c762..7c109b044b1462 100644
--- a/srcpkgs/urh/template
+++ b/srcpkgs/urh/template
@@ -1,7 +1,7 @@
# Template file for 'urh'
pkgname=urh
version=2.9.6
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="python3-devel python3-PyQt5 libairspy-devel librtlsdr-devel
From 626afbb71365e05af562e7fafc83b9841ba6477d Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:08:40 -0400
Subject: [PATCH 24/24] wxPython: fix runtime dependencies
---
srcpkgs/wxPython/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/wxPython/template b/srcpkgs/wxPython/template
index 7f4c8a21e18589..0d29630771a48f 100644
--- a/srcpkgs/wxPython/template
+++ b/srcpkgs/wxPython/template
@@ -1,14 +1,14 @@
# Template file for 'wxPython'
pkgname=wxPython
version=4.2.1
-revision=4
+revision=5
build_style=python3-module
make_build_args="--skip-build"
make_install_args="--skip-build"
hostmakedepends="pkg-config python3-setuptools python3-pathlib2 python3-Cython0.29"
makedepends="python3-devel wxWidgets-gtk3-devel SDL2-devel
gst-plugins-base1-devel"
-depends="python3 python3-six python3-numpy python3-Pillow"
+depends="python3-six"
short_desc="Python bindings for wxWidgets"
maintainer="Orphaned <orphan@voidlinux.org>"
license="custom:wxWindows"
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [PR PATCH] [Updated] [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (9 preceding siblings ...)
2024-07-03 13:56 ` ahesford
@ 2024-07-03 14:09 ` ahesford
2024-07-08 17:29 ` ahesford
11 siblings, 0 replies; 13+ messages in thread
From: ahesford @ 2024-07-03 14:09 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2360 bytes --]
There is an updated pull request by ahesford against master on the void-packages repository
https://github.com/ahesford/void-packages numpy
https://github.com/void-linux/void-packages/pull/51077
[WIP] NumPy 2.0
This update removes a lot of long-deprecated interfaces and probably breaks several dependants. It will need careful testing.
[ci skip]
The following packages ship shared libraries; most require a rebuild to even be importable, and the rest are included just to be sure (each will be ticked as it is tested for compatibility):
- [ ] gnuradio
- [ ] mypaint
- [ ] opencv
- [ ] plplot
- [x] python3-Bottleneck (a single test failure for memory leaks appears unrelated to NumPy)
- [x] python3-PyOpenGL-accelerate (its only dependant doesn't require NumPy support, so I'll rebuild without support)
- [x] python3-h5py
- [x] python3-matplotlib (basic use seems to work)
- [x] python3-numexpr
- [ ] python3-numpy-stl (several test failures related to closeness tests that aren't quite as close as expected; also, a few interface changes leak into tests)
- [ ] python3-pandas
- [ ] python3-pyFFTW (several test failures, with implications beyond NumPy; needs more investigation)
- [ ] python3-pyopencl
- [x] python3-pywt
- [ ] python3-scikit-image
- [ ] python3-scikit-learn
- [ ] python3-scipy
- [ ] python3-tables
- [ ] python3-vispy
- [ ] urh
- [x] wxPython (doesn't actually depend on NumPy, so it will be rebuilt to correct dependencies)
The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
- DisplayCAL
The following packages do not appear to build Python extensions and should not require a rebuild, but some tests should be performed to ensure basic functionality with NumPy 2.0:
- [ ] bCNC
- [ ] flowblade
- [ ] grass
- [ ] hydrus
- [ ] inkscape
- [ ] openrazer-meta
- [ ] pymol
- [ ] python3-bokeh
- [ ] python3-imageio
- [ ] python3-joblib
- [ ] python3-niapy
- [ ] python3-openai
- [ ] python3-pgzero
- [ ] python3-pycollada
- [ ] python3-pyqtgraph
- [x] python3-pytools
- [ ] python3-seaborn
- [ ] python3-tifffile
- [ ] python3-trimesh
- [x] pythran (compiles python3-scipy and python3-scikit-image just fine)
- [ ] qgis
- [ ] xdot
A patch file from https://github.com/void-linux/void-packages/pull/51077.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-numpy-51077.patch --]
[-- Type: text/x-diff, Size: 35767 bytes --]
From 1b520369f80a8f63d02cabbf0bcff74424e35483 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:07:16 -0400
Subject: [PATCH 01/24] python3-numpy: update to 2.0.0.
---
.../python3-numpy/files/fenv-constants.patch | 10 ++++-----
.../patches/fix-pytest-warning.patch | 8 -------
.../patches/version-relaxation.patch | 14 ------------
srcpkgs/python3-numpy/template | 22 +++++++++++--------
4 files changed, 18 insertions(+), 36 deletions(-)
delete mode 100644 srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
delete mode 100644 srcpkgs/python3-numpy/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-numpy/files/fenv-constants.patch b/srcpkgs/python3-numpy/files/fenv-constants.patch
index 987ad4e346ffa5..075cac8a0820c6 100644
--- a/srcpkgs/python3-numpy/files/fenv-constants.patch
+++ b/srcpkgs/python3-numpy/files/fenv-constants.patch
@@ -1,11 +1,11 @@
---- numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:53:51.998825328 +1000
-+++ numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:54:03.611889518 +1000
+--- numpy/_core/src/npymath/ieee754.c.src.orig 2024-07-02 11:50:48.519261116 -0400
++++ numpy/_core/src/npymath/ieee754.c.src 2024-07-02 11:51:06.336360850 -0400
@@ -8,6 +8,8 @@
#include "npy_math_private.h"
#include "numpy/utils.h"
+#include "fenv-constants.h"
+
- #ifndef HAVE_COPYSIGN
- double npy_copysign(double x, double y)
- {
+ /*
+ The below code is provided for compilers which do not yet provide C11 compatibility (gcc 4.5 and older)
+ */
diff --git a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch b/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
deleted file mode 100644
index 990ab80197542c..00000000000000
--- a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- a/pytest.ini 2023-06-16 22:48:37.211072200 -0300
-+++ b/pytest.ini 2023-06-19 22:52:00.230063231 -0300
-@@ -27,3 +27,5 @@
- ignore:\n\n `numpy.distutils`:DeprecationWarning
- # Ignore mypy >= 0.971 DeprecationWarnings
- ignore:path is deprecated\. Use files\(\) instead:DeprecationWarning:mypy
-+# Ignore warning raised when importing setuptools.command.
-+ ignore:pkg_resources is deprecated as an API:DeprecationWarning
diff --git a/srcpkgs/python3-numpy/patches/version-relaxation.patch b/srcpkgs/python3-numpy/patches/version-relaxation.patch
deleted file mode 100644
index f36972e5cc96a7..00000000000000
--- a/srcpkgs/python3-numpy/patches/version-relaxation.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-As with SciPy, NumPy abuses specifications of *build requirements* as a means
-to control the environment under which wheels are built for distribution.
-
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -2,7 +2,7 @@
- build-backend = "mesonpy"
- requires = [
- "Cython>=0.29.34,<3.1",
-- "meson-python>=0.15.0,<0.16.0",
-+ "meson-python>=0.15.0",
- ]
-
- [project]
diff --git a/srcpkgs/python3-numpy/template b/srcpkgs/python3-numpy/template
index e6b6accb42ab4a..2adde47160b768 100644
--- a/srcpkgs/python3-numpy/template
+++ b/srcpkgs/python3-numpy/template
@@ -1,6 +1,6 @@
# Template file for 'python3-numpy'
pkgname=python3-numpy
-version=1.26.4
+version=2.0.0
revision=1
build_style=python3-pep517
build_helper="meson qemu"
@@ -19,7 +19,7 @@ license="BSD-3-Clause"
homepage="https://www.numpy.org/"
changelog="https://github.com/numpy/numpy/releases"
distfiles="${PYPI_SITE}/n/numpy/numpy-${version}.tar.gz"
-checksum=2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+checksum=cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
alternatives="numpy:f2py:/usr/bin/f2py3"
build_options="openblas"
@@ -42,14 +42,10 @@ fi
post_patch() {
case "${XBPS_TARGET_MACHINE}" in
armv5tel-musl)
- cp "${FILESDIR}/fenv-constants.h" numpy/core/src/npymath/
+ cp "${FILESDIR}/fenv-constants.h" numpy/_core/src/npymath/
patch -Np0 -i "${FILESDIR}/fenv-constants.patch"
;;
esac
-
- if [ "$XBPS_TARGET_LIBC" = musl ] ; then
- vsed -i 's|"backtrace",||' numpy/core/setup_common.py
- fi
}
do_check() {
@@ -77,9 +73,17 @@ do_check() {
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer --destdir "${testdir}" dist/numpy*.whl
+ cd "${testdir}"
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
- python3 runtests.py --no-build -- \
- -n "${XBPS_MAKEJOBS}" ${_skip+-k "not(${_skip#or})"}
+ python3 <<-EOF
+ import numpy
+ numpy.test(
+ extra_argv=[
+ '-n', '${XBPS_MAKEJOBS}',
+ ${_skip+'-k', 'not(${_skip#or})'}
+ ],
+ )
+ EOF
}
post_install() {
From b22234fa3c25d083017f8c3f746fa7c69b7dc12a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 15:09:53 -0400
Subject: [PATCH 02/24] common/build-helper/numpy.sh: update paths for
python3-numpy-2.0.0
---
common/build-helper/numpy.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/common/build-helper/numpy.sh b/common/build-helper/numpy.sh
index e0856dbca7cf3c..0adce85e151fde 100644
--- a/common/build-helper/numpy.sh
+++ b/common/build-helper/numpy.sh
@@ -19,8 +19,8 @@ fi
# python3-setuptools finds numpy libs and headers on the host first;
# adding search paths up front allows the target to take priority
-CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
-LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/lib"
+CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
+LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/lib"
LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/random/lib"
# distutils from python3-numpy looks to environment variables F77 and
@@ -45,7 +45,7 @@ if [[ "${build_helper}" = *meson* ]]; then
mkdir -p "${XBPS_WRAPPERDIR}/meson"
cat > "${_npy_meson_cross}" <<-EOF
[properties]
- numpy-include-dir = '${_cross_py_site}/numpy/core/include'
+ numpy-include-dir = '${_cross_py_site}/numpy/_core/include'
pythran-include-dir = '${_cross_py_site}/pythran'
EOF
fi
From da6cf5d116214f1344da79854a766637fc4907b0 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:18:04 -0400
Subject: [PATCH 03/24] gnuradio: rebuild against python3-numpy-2.0.0
---
srcpkgs/gnuradio/template | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/gnuradio/template b/srcpkgs/gnuradio/template
index 58127cedd3ddc6..f512f953f07137 100644
--- a/srcpkgs/gnuradio/template
+++ b/srcpkgs/gnuradio/template
@@ -1,8 +1,9 @@
# Template file for 'gnuradio'
pkgname=gnuradio
version=3.10.8.0
-revision=1
+revision=2
build_style=cmake
+build_helper="python3"
conf_files="/etc/gnuradio/conf.d/*"
configure_args="-DMATHJAX2_USE_ROOT=/usr/share/mathjax
-DZEROMQ_INCLUDE_DIRS=${XBPS_CROSS_BASE}/usr/include
@@ -27,7 +28,7 @@ python_version=3
if [ "$CROSS_BUILD" ]; then
# CMake fails when cross-compiling.
- configure_args+=" -DENABLE_TESTING=OFF"
+ configure_args+=" -DENABLE_TESTING=OFF -DPYBIND11_USE_CROSSCOMPILING=ON"
fi
if [ "${XBPS_TARGET_MACHINE%-musl}" = "i686" ]; then
From 02ecb5f7945be18534d672a57ad23b019d5912e4 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:13:46 -0400
Subject: [PATCH 04/24] mypaint: rebuild against python3-numpy-2.0.0
---
srcpkgs/mypaint/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/mypaint/template b/srcpkgs/mypaint/template
index 1a1d995bd7e7cd..d5fdb8d67cf5ca 100644
--- a/srcpkgs/mypaint/template
+++ b/srcpkgs/mypaint/template
@@ -1,7 +1,7 @@
# Template file for 'mypaint'
pkgname=mypaint
version=2.0.1
-revision=5
+revision=6
build_style=python3-module
pycompile_dirs="/usr/share/mypaint"
hostmakedepends="swig pkg-config gettext python3-setuptools python3-numpy python3"
From a54d6ab7a0badce9bd2af360c90242cf687ef7ea Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 05/24] opencv: rebuild against python3-numpy-2.0.0
---
srcpkgs/opencv/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/opencv/template b/srcpkgs/opencv/template
index aea4bfc3a265cf..0022fd863cc192 100644
--- a/srcpkgs/opencv/template
+++ b/srcpkgs/opencv/template
@@ -1,7 +1,7 @@
# Template file for 'opencv'
pkgname=opencv
version=4.6.0
-revision=6
+revision=7
create_wrksrc=yes
build_wrksrc=${pkgname}-${version}
build_style=cmake
@@ -33,7 +33,7 @@ make_check=no
if [ "$CROSS_BUILD" ]; then
# Tell opencv where to find python and numpy
configure_args+=" -DPYTHON3_INCLUDE_PATH=${XBPS_CROSS_BASE}/${py3_inc}
- -DPYTHON3_NUMPY_INCLUDE_DIRS=${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
+ -DPYTHON3_NUMPY_INCLUDE_DIRS=${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
fi
case "$XBPS_TARGET_MACHINE" in
From 36365981f7fbba88418b36f8829e484b085ad342 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 06/24] plplot: rebuild against python3-numpy-2.0.0
---
srcpkgs/plplot/template | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/plplot/template b/srcpkgs/plplot/template
index a80e12310e9338..b17eee96f21240 100644
--- a/srcpkgs/plplot/template
+++ b/srcpkgs/plplot/template
@@ -1,11 +1,14 @@
# Template file for 'plplot'
pkgname=plplot
version=5.15.0
-revision=5
+revision=6
build_style=cmake
-build_helper="qemu"
-configure_args="-DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
- -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3"
+build_helper="qemu numpy"
+configure_args="
+ -DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
+ -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3
+ -DCMAKE_C_FLAGS=-I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include
+"
hostmakedepends="pkg-config gcc-fortran swig freefont-ttf
lua53 python3-numpy python3-setuptools plplot-devel"
makedepends="pango-devel cairo-devel freetype-devel libqhull-devel
From 3fb224ff2cc1fdcb77166b5ead03d231dab666b5 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:07:21 -0400
Subject: [PATCH 07/24] python3-Bottleneck: update to 1.4.0.
---
srcpkgs/python3-Bottleneck/template | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/srcpkgs/python3-Bottleneck/template b/srcpkgs/python3-Bottleneck/template
index afafcd572ddb58..1c9400da55a2ec 100644
--- a/srcpkgs/python3-Bottleneck/template
+++ b/srcpkgs/python3-Bottleneck/template
@@ -1,9 +1,10 @@
# Template file for 'python3-Bottleneck'
pkgname=python3-Bottleneck
-version=1.3.7
+version=1.4.0
revision=1
-build_style=python3-module
-hostmakedepends="python3-setuptools python3-numpy"
+build_style=python3-pep517
+make_check_target=".xbps-testdir/*/${py3_sitelib}/bottleneck/tests"
+hostmakedepends="python3-setuptools python3-versioneer python3-wheel python3-numpy"
makedepends="python3-devel"
depends="python3-numpy"
checkdepends="python3-pytest-xdist $depends"
@@ -11,8 +12,8 @@ short_desc="Fast NumPy array functions written in C (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-2-Clause"
homepage="https://github.com/kwgoodman/bottleneck"
-distfiles="${PYPI_SITE}/B/Bottleneck/Bottleneck-${version}.tar.gz"
-checksum=e1467e373ad469da340ed0ff283214d6531cc08bfdca2083361a3aa6470681f8
+distfiles="${PYPI_SITE}/b/bottleneck/bottleneck-${version}.tar.gz"
+checksum=beb36df519b8709e7d357c0c9639b03b885ca6355bbf5e53752c685de51605b8
post_install() {
rm -f ${DESTDIR}/usr/lib/python*/site-packages/bottleneck/LICENSE
From 1586dc9d235dae96877ff762361b952ce997b14f Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:06:53 -0400
Subject: [PATCH 08/24] python3-PyOpenGL-accelerate: rebuild without
python3-numpy
---
srcpkgs/python3-PyOpenGL-accelerate/template | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/srcpkgs/python3-PyOpenGL-accelerate/template b/srcpkgs/python3-PyOpenGL-accelerate/template
index cec8b8c0bc6f4d..2161cd9b433d47 100644
--- a/srcpkgs/python3-PyOpenGL-accelerate/template
+++ b/srcpkgs/python3-PyOpenGL-accelerate/template
@@ -1,11 +1,11 @@
# Template file for 'python3-PyOpenGL-accelerate'
pkgname=python3-PyOpenGL-accelerate
version=3.1.7
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython"
-makedepends="python3-devel python3-numpy"
-depends="python3-numpy"
+makedepends="python3-devel"
+depends="python3"
short_desc="Acceleration code for PyOpenGL (Python3)"
maintainer="Alain Kalker <a.c.kalker@gmail.com>"
license="BSD-3-Clause"
From a082b2b569a2c8ff8cc0c3b99ae8c3f2cc5f6f23 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:33:54 -0400
Subject: [PATCH 09/24] python3-h5py: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-h5py/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-h5py/template b/srcpkgs/python3-h5py/template
index e71350fbf60ecb..c77df7c1123719 100644
--- a/srcpkgs/python3-h5py/template
+++ b/srcpkgs/python3-h5py/template
@@ -1,7 +1,7 @@
# Template file for 'python3-h5py'
pkgname=python3-h5py
version=3.11.0
-revision=1
+revision=2
build_style=python3-module
build_helper="numpy"
hostmakedepends="python3-setuptools python3-Cython0.29 python3-pkgconfig"
From 12303bf20de7888932166707c6f36f8cda69cf6f Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:56:19 -0400
Subject: [PATCH 10/24] python3-matplotlib: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-matplotlib/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-matplotlib/template b/srcpkgs/python3-matplotlib/template
index 13f9b255ad16ad..3bc99f9f4de763 100644
--- a/srcpkgs/python3-matplotlib/template
+++ b/srcpkgs/python3-matplotlib/template
@@ -1,7 +1,7 @@
# Template file for 'python3-matplotlib'
pkgname=python3-matplotlib
version=3.9.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_build_args="-Csetup-args=-Dsystem-freetype=true
From f5109f48f8970d8f554bae0ca89fe25d7b9e986a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 11/24] python3-numexpr: update to 2.10.1.
---
srcpkgs/python3-numexpr/template | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/srcpkgs/python3-numexpr/template b/srcpkgs/python3-numexpr/template
index 4e4b9dc3177840..d148218d101708 100644
--- a/srcpkgs/python3-numexpr/template
+++ b/srcpkgs/python3-numexpr/template
@@ -1,19 +1,20 @@
# Template file for 'python3-numexpr'
pkgname=python3-numexpr
-version=2.8.3
-revision=3
-build_style=python3-module
-build_helper=numpy
-hostmakedepends="python3-wheel"
+version=2.10.1
+revision=1
+build_style=python3-pep517
+build_helper="numpy"
+make_check_args="-k not(test_max_threads_unset)"
+hostmakedepends="python3-setuptools python3-wheel"
makedepends="python3-devel python3-numpy"
-depends="python3-numpy python3-packaging"
-checkdepends="${depends} python3-pytest-xdist"
+depends="python3-numpy"
+checkdepends="${depends} python3-pytest"
short_desc="Fast numerical expression evaluator for NumPy (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="MIT"
homepage="https://github.com/pydata/numexpr"
distfiles="https://github.com/pydata/numexpr/archive/v${version}.tar.gz"
-checksum=389ceefca74eff30ec3fd03fc4c3b7ab3df8f22d1f235117a392ce702ed208c0
+checksum=e499bd19a7fd9803d5ec1b2cff2e0a11a2f01a109d5326e5a09eff590448c793
pre_check() {
python3 setup.py build_ext --inplace
From 933719a386fcf340363c6c76df3c4e6807b2a9ec Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 12/24] python3-numpy-stl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-numpy-stl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-numpy-stl/template b/srcpkgs/python3-numpy-stl/template
index 9257dca68817b6..72a7448c990aad 100644
--- a/srcpkgs/python3-numpy-stl/template
+++ b/srcpkgs/python3-numpy-stl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-numpy-stl'
pkgname=python3-numpy-stl
version=2.17.1
-revision=3
+revision=4
build_style=python3-module
build_helper="numpy"
# skip flake8 tests
From 5096de7370d990a3ab00e9cb496440f17c3290e7 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:02 -0400
Subject: [PATCH 13/24] python3-pandas: update to 2.2.2.
---
.../patches/version-relaxation.patch | 24 -------------------
srcpkgs/python3-pandas/template | 10 ++++----
2 files changed, 6 insertions(+), 28 deletions(-)
delete mode 100644 srcpkgs/python3-pandas/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-pandas/patches/version-relaxation.patch b/srcpkgs/python3-pandas/patches/version-relaxation.patch
deleted file mode 100644
index c94e5fa170eebe..00000000000000
--- a/srcpkgs/python3-pandas/patches/version-relaxation.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./pyproject.toml.orig 2023-10-02 14:33:56.359267774 -0400
-+++ ./pyproject.toml 2023-10-02 14:35:29.662565059 -0400
-@@ -2,8 +2,8 @@
- # Minimum requirements for the build system to execute.
- # See https://github.com/scipy/scipy/pull/12940 for the AIX issue.
- requires = [
-- "meson-python==0.13.1",
-- "meson==1.2.1",
-+ "meson-python",
-+ "meson",
- "wheel",
- "Cython>=0.29.33,<3", # Note: sync with setup.py, environment.yml and asv.conf.json
- # Note: numpy 1.25 has a backwards compatible C API by default
---- ./meson.build.orig 2023-10-02 14:42:02.161816469 -0400
-+++ ./meson.build 2023-09-20 15:24:13.000000000 -0400
-@@ -4,7 +4,7 @@
- 'c', 'cpp', 'cython',
- version: run_command(['generate_version.py', '--print'], check: true).stdout().strip(),
- license: 'BSD-3',
-- meson_version: '>=1.2.1',
-+ meson_version: '>=1.2.0',
- default_options: [
- 'buildtype=release',
- 'c_std=c99'
diff --git a/srcpkgs/python3-pandas/template b/srcpkgs/python3-pandas/template
index c8e610dee33729..79e6f8462349cd 100644
--- a/srcpkgs/python3-pandas/template
+++ b/srcpkgs/python3-pandas/template
@@ -1,10 +1,12 @@
# Template file for 'python3-pandas'
pkgname=python3-pandas
-version=2.1.4
-revision=1
+version=2.2.2
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
-hostmakedepends="python3-meson-python python3-wheel python3-Cython0.29
+# Pandas imposes strict and unnecessary restrictions on build dependencies
+make_build_args="--skip-dependency-check"
+hostmakedepends="python3-meson-python python3-wheel python3-Cython
python3-numpy python3-versioneer pkg-config"
makedepends="python3-devel python3-numpy python3-dateutil python3-pytz"
depends="python3-numpy python3-dateutil python3-pytz"
@@ -14,7 +16,7 @@ license="BSD-3-Clause"
homepage="https://pandas.pydata.org/"
changelog="https://pandas.pydata.org/pandas-docs/stable/whatsnew/index.html"
distfiles="https://github.com/pandas-dev/pandas/archive/v${version}.tar.gz"
-checksum=00e0b049bac3d60c5701cae1f2fe57314f6ab8ae302b28953d4f9337817f6fc1
+checksum=79bc6fb5505afd27875c93fec27cece74318470c4e274ec7ef48b16f046dc006
# Builds seem to sometimes have missing symbol problems;
# the intermittent nature suggests this might be a race
disable_parallel_build=yes
From dd8879b7b5785b1efbe0c36eea709a2adcf69485 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:15:55 -0400
Subject: [PATCH 14/24] python3-pyFFTW: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyFFTW/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyFFTW/template b/srcpkgs/python3-pyFFTW/template
index ba1f6fc9e158ab..414b77b639ada5 100644
--- a/srcpkgs/python3-pyFFTW/template
+++ b/srcpkgs/python3-pyFFTW/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyFFTW'
pkgname=python3-pyFFTW
version=0.13.1
-revision=2
+revision=3
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="fftw-devel python3-devel"
From 72377e59053bf2c8036a543e02eac7e9cd72a164 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 15/24] python3-pyopencl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyopencl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyopencl/template b/srcpkgs/python3-pyopencl/template
index f57ba9421ed35a..09320616592f80 100644
--- a/srcpkgs/python3-pyopencl/template
+++ b/srcpkgs/python3-pyopencl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyopencl'
pkgname=python3-pyopencl
version=2024.2.7
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel python3-numpy
python3-scikit-build-core cmake ninja python3-nanobind"
From 406d2d347f40f1a8d53e71f0571a6f26d0eaa9dd Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 16/24] python3-pywt: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pywt/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pywt/template b/srcpkgs/python3-pywt/template
index b4890de4450b45..9930684cedcff0 100644
--- a/srcpkgs/python3-pywt/template
+++ b/srcpkgs/python3-pywt/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pywt'
pkgname=python3-pywt
version=1.6.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_check_target=".xbps-testdir/*/${py3_sitelib}/pywt/tests"
From 02b0a55ab5c8fbdf74a2a0495dd8d71f1095398a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 17:03:26 -0400
Subject: [PATCH 17/24] pythran: fix required gast version
---
srcpkgs/pythran/patches/gast-0.6.patch | 76 ++++++++++++++++++++++++++
srcpkgs/pythran/template | 2 +-
2 files changed, 77 insertions(+), 1 deletion(-)
create mode 100644 srcpkgs/pythran/patches/gast-0.6.patch
diff --git a/srcpkgs/pythran/patches/gast-0.6.patch b/srcpkgs/pythran/patches/gast-0.6.patch
new file mode 100644
index 00000000000000..87dfcdcf450bce
--- /dev/null
+++ b/srcpkgs/pythran/patches/gast-0.6.patch
@@ -0,0 +1,76 @@
+From 840a0e706ec39963aec6bcd1f118bf33177c20b4 Mon Sep 17 00:00:00 2001
+From: serge-sans-paille <serge.guelton@telecom-bretagne.eu>
+Date: Sat, 29 Jun 2024 19:13:02 +0200
+Subject: [PATCH] Bump gast requirement to 0.6.0
+
+This mostly helps for harmonious behavior wrt. gast.dump
+---
+ docs/TUTORIAL.rst | 8 ++++----
+ pythran/utils.py | 2 +-
+ requirements.txt | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/docs/TUTORIAL.rst b/docs/TUTORIAL.rst
+index 09f6902f9..7692547eb 100644
+--- a/docs/TUTORIAL.rst
++++ b/docs/TUTORIAL.rst
+@@ -20,7 +20,7 @@ Python ships a standard module, ``ast`` to turn Python code into an AST. For ins
+ >>> code = "a=1"
+ >>> tree = ast.parse(code) # turn the code into an AST
+ >>> print(ast.dump(tree)) # view it as a string
+- Module(body=[Assign(targets=[Name(id='a', ctx=Store(), annotation=None, type_comment=None)], value=Constant(value=1, kind=None), type_comment=None)], type_ignores=[])
++ Module(body=[Assign(targets=[Name(id='a', ctx=Store())], value=Constant(value=1, kind=None))])
+
+ Deciphering the above line, one learns that the single assignment is parsed as
+ a module containing a single statement, which is an assignment to a single
+@@ -33,7 +33,7 @@ Eventually, one needs to parse more complex codes, and things get a bit more cry
+ ... return n if n< 2 else fib(n-1) + fib(n-2)"""
+ >>> tree = ast.parse(fib_src)
+ >>> print(ast.dump(tree))
+- Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param(), annotation=None, type_comment=None)], posonlyargs=[], vararg=None, kwonlyargs=[], kw_defaults=[], kwarg=None, defaults=[]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load(), annotation=None, type_comment=None), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=1, kind=None))], keywords=[]), op=Add(), right=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=2, kind=None))], keywords=[]))))], decorator_list=[], returns=None, type_comment=None)], type_ignores=[])
++ Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param())]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load()), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load()), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=1, kind=None))]), op=Add(), right=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=2, kind=None))]))))])])
+
+ The idea remains the same. The whole Python syntax is described in
+ http://docs.python.org/2/library/ast.html and is worth a glance, otherwise
+@@ -199,7 +199,7 @@ constant expressions. In the previous code, there is only two constant
+
+ >>> ce = pm.gather(analyses.ConstantExpressions, tree)
+ >>> sorted(map(ast.dump, ce))
+- ["Attribute(value=Name(id='math', ctx=Load(), annotation=None, type_comment=None), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
++ ["Attribute(value=Name(id='math', ctx=Load()), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
+
+ One of the most critical analyse of Pythran is the points-to analysis. There
+ are two flavors of this analyse, one that computes an over-set of the aliased
+@@ -210,7 +210,7 @@ variable, and one that computes an under set. ``Aliases`` computes an over-set::
+ >>> al = pm.gather(analyses.Aliases, tree)
+ >>> returned = tree.body[-1].body[-1].value
+ >>> print(ast.dump(returned))
+- Name(id='b', ctx=Load(), annotation=None, type_comment=None)
++ Name(id='b', ctx=Load())
+ >>> sorted(a.id for a in al[returned])
+ ['c', 'd']
+
+diff --git a/pythran/utils.py b/pythran/utils.py
+index 2d7a67327..55a7e8ad6 100644
+--- a/pythran/utils.py
++++ b/pythran/utils.py
+@@ -106,7 +106,7 @@ def get_variable(assignable):
+ ... slice=ast.Name('j', ast.Load(), None, None),
+ ... ctx=ast.Load())
+ >>> ast.dump(get_variable(ref))
+- "Name(id='a', ctx=Load(), annotation=None, type_comment=None)"
++ "Name(id='a', ctx=Load())"
+ """
+ msg = "Only name and subscript can be assigned."
+ assert isinstance(assignable, (ast.Name, ast.Subscript)), msg
+diff --git a/requirements.txt b/requirements.txt
+index fd6a738e5..c7a25c52a 100644
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -1,5 +1,5 @@
+ ply>=3.4
+ setuptools
+-gast~=0.5.0
++gast~=0.6.0
+ numpy
+ beniget~=0.4.0
diff --git a/srcpkgs/pythran/template b/srcpkgs/pythran/template
index a717256074d6d3..9a8761a767f67e 100644
--- a/srcpkgs/pythran/template
+++ b/srcpkgs/pythran/template
@@ -1,7 +1,7 @@
# Template file for 'pythran'
pkgname=pythran
version=0.16.1
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel"
depends="python3-ply python3-gast python3-beniget python3-numpy
From e3eba576e11e122547d09fb6929c1aceec5c08e0 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 18/24] python3-scikit-image: rebuild against
python3-numpy-2.0.0
---
srcpkgs/python3-scikit-image/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scikit-image/template b/srcpkgs/python3-scikit-image/template
index 144193cd39b330..914aa23ce673f2 100644
--- a/srcpkgs/python3-scikit-image/template
+++ b/srcpkgs/python3-scikit-image/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scikit-image'
pkgname=python3-scikit-image
version=0.24.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
hostmakedepends="python3-build python3-installer python3-meson-python
From 0ff0dd379c311f5704b65abeef4da37d2a1fe2a3 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 19/24] python3-scikit-learn: update to 1.5.0.
---
.../patches/numpy-version.patch | 11 ----------
srcpkgs/python3-scikit-learn/template | 20 +++++++------------
2 files changed, 7 insertions(+), 24 deletions(-)
delete mode 100644 srcpkgs/python3-scikit-learn/patches/numpy-version.patch
diff --git a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch b/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
deleted file mode 100644
index 0ffb53e3433e9b..00000000000000
--- a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -9,7 +9,7 @@
- # wheels on PyPI
- #
- # see: https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
-- "oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
-+ "numpy>=1.23.2; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
- # For CPython 3.10 under Windows, SciPy requires NumPy 1.22.3 while the
- # oldest supported NumPy is defined as 1.21.6. We therefore need to force
- # it for this specific configuration. For details, see
diff --git a/srcpkgs/python3-scikit-learn/template b/srcpkgs/python3-scikit-learn/template
index a6364f089c4f4d..c0983fe4624dd3 100644
--- a/srcpkgs/python3-scikit-learn/template
+++ b/srcpkgs/python3-scikit-learn/template
@@ -1,27 +1,21 @@
# Template file for 'python3-scikit-learn'
pkgname=python3-scikit-learn
-version=1.3.0
-revision=2
+version=1.5.0
+revision=1
build_style=python3-pep517
-hostmakedepends="python3-setuptools python3-Cython python3-numpy python3-scipy
- python3-wheel"
-makedepends="python3-devel libgomp-devel"
+build_helper="numpy meson"
+hostmakedepends="python3-Cython python3-numpy python3-scipy
+ python3-meson-python pkg-config"
+makedepends="python3-devel python3-numpy libgomp-devel"
depends="python3-numpy python3-scipy python3-joblib python3-threadpoolctl"
short_desc="Python3 modules for machine learning and data mining"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-3-Clause"
homepage="https://scikit-learn.org/"
distfiles="https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz"
-checksum=ead129f466a0859555ce4f41280ae06623ef3255efff0b1692c57f15e39767b5
+checksum=cd2aac2b566c7e740d34aabb4737864c74ba33c29aad7101fbf1bab2931c02dc
make_check=no # tests don't work properly unless package is installed
-export SKLEARN_BUILD_PARALLEL="${XBPS_MAKEJOBS}"
-
-if [ "$CROSS_BUILD" ]; then
- # Without this, setup.py tries to run a target executable
- export PYTHON_CROSSENV=1
-fi
-
post_install() {
vlicense COPYING
}
From 235a6db04e2e2d5320166b0fd089142b63fef1bd Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 20/24] python3-scipy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-scipy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scipy/template b/srcpkgs/python3-scipy/template
index 41cf9ddb873aab..e35cd25b4595c6 100644
--- a/srcpkgs/python3-scipy/template
+++ b/srcpkgs/python3-scipy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scipy'
pkgname=python3-scipy
version=1.14.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
# SciPy imposes strict and unnecessary restrictions on build dependencies
From b04aa65910e77a0226540f7e431acbe29ac4cb65 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 21/24] python3-tables: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-tables/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-tables/template b/srcpkgs/python3-tables/template
index 81b7351b972649..38c93292ea4bf8 100644
--- a/srcpkgs/python3-tables/template
+++ b/srcpkgs/python3-tables/template
@@ -1,7 +1,7 @@
# Template file for 'python3-tables'
pkgname=python3-tables
version=3.7.0
-revision=3
+revision=4
build_style=python3-module
build_helper=numpy
# XXX: c-blosc (using internal for now)
From 6df01fc4e4bcbd700deafeeb771e75d425b84d5d Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 22/24] python3-vispy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-vispy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-vispy/template b/srcpkgs/python3-vispy/template
index 60dc8ae4b82996..6411756abc3b71 100644
--- a/srcpkgs/python3-vispy/template
+++ b/srcpkgs/python3-vispy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-vispy'
pkgname=python3-vispy
version=0.6.1
-revision=8
+revision=9
build_style=python3-module
build_helper=numpy
hostmakedepends="python3-setuptools python3-Cython python3-numpy"
From ddae40a07368eec32be75e27a33e68dde7baa4e3 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 23/24] urh: rebuild against python3-numpy-2.0.0
---
srcpkgs/urh/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/urh/template b/srcpkgs/urh/template
index f86a7ea530c762..7c109b044b1462 100644
--- a/srcpkgs/urh/template
+++ b/srcpkgs/urh/template
@@ -1,7 +1,7 @@
# Template file for 'urh'
pkgname=urh
version=2.9.6
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="python3-devel python3-PyQt5 libairspy-devel librtlsdr-devel
From 5253943e274c5ed05e17cf70412d3830fecac004 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:08:40 -0400
Subject: [PATCH 24/24] wxPython: fix runtime dependencies
---
srcpkgs/wxPython/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/wxPython/template b/srcpkgs/wxPython/template
index 7f4c8a21e18589..0d29630771a48f 100644
--- a/srcpkgs/wxPython/template
+++ b/srcpkgs/wxPython/template
@@ -1,14 +1,14 @@
# Template file for 'wxPython'
pkgname=wxPython
version=4.2.1
-revision=4
+revision=5
build_style=python3-module
make_build_args="--skip-build"
make_install_args="--skip-build"
hostmakedepends="pkg-config python3-setuptools python3-pathlib2 python3-Cython0.29"
makedepends="python3-devel wxWidgets-gtk3-devel SDL2-devel
gst-plugins-base1-devel"
-depends="python3 python3-six python3-numpy python3-Pillow"
+depends="python3-six"
short_desc="Python bindings for wxWidgets"
maintainer="Orphaned <orphan@voidlinux.org>"
license="custom:wxWindows"
^ permalink raw reply [flat|nested] 13+ messages in thread* Re: [PR PATCH] [Updated] [WIP] NumPy 2.0
2024-07-02 14:33 [PR PATCH] [WIP] NumPy 2.0 ahesford
` (10 preceding siblings ...)
2024-07-03 14:09 ` ahesford
@ 2024-07-08 17:29 ` ahesford
11 siblings, 0 replies; 13+ messages in thread
From: ahesford @ 2024-07-08 17:29 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2360 bytes --]
There is an updated pull request by ahesford against master on the void-packages repository
https://github.com/ahesford/void-packages numpy
https://github.com/void-linux/void-packages/pull/51077
[WIP] NumPy 2.0
This update removes a lot of long-deprecated interfaces and probably breaks several dependants. It will need careful testing.
[ci skip]
The following packages ship shared libraries; most require a rebuild to even be importable, and the rest are included just to be sure (each will be ticked as it is tested for compatibility):
- [ ] gnuradio
- [ ] mypaint
- [ ] opencv
- [ ] plplot
- [x] python3-Bottleneck (a single test failure for memory leaks appears unrelated to NumPy)
- [x] python3-PyOpenGL-accelerate (its only dependant doesn't require NumPy support, so I'll rebuild without support)
- [x] python3-h5py
- [x] python3-matplotlib (basic use seems to work)
- [x] python3-numexpr
- [ ] python3-numpy-stl (several test failures related to closeness tests that aren't quite as close as expected; also, a few interface changes leak into tests)
- [ ] python3-pandas
- [ ] python3-pyFFTW (several test failures, with implications beyond NumPy; needs more investigation)
- [ ] python3-pyopencl
- [x] python3-pywt
- [ ] python3-scikit-image
- [ ] python3-scikit-learn
- [ ] python3-scipy
- [ ] python3-tables
- [ ] python3-vispy
- [ ] urh
- [x] wxPython (doesn't actually depend on NumPy, so it will be rebuilt to correct dependencies)
The following package may or may not break with new NumPy, but is already broken because it requires Python < 3.12:
- DisplayCAL
The following packages do not appear to build Python extensions and should not require a rebuild, but some tests should be performed to ensure basic functionality with NumPy 2.0:
- [ ] bCNC
- [ ] flowblade
- [ ] grass
- [ ] hydrus
- [ ] inkscape
- [ ] openrazer-meta
- [ ] pymol
- [ ] python3-bokeh
- [ ] python3-imageio
- [ ] python3-joblib
- [ ] python3-niapy
- [ ] python3-openai
- [ ] python3-pgzero
- [ ] python3-pycollada
- [ ] python3-pyqtgraph
- [x] python3-pytools
- [ ] python3-seaborn
- [ ] python3-tifffile
- [ ] python3-trimesh
- [x] pythran (compiles python3-scipy and python3-scikit-image just fine)
- [ ] qgis
- [ ] xdot
A patch file from https://github.com/void-linux/void-packages/pull/51077.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-numpy-51077.patch --]
[-- Type: text/x-diff, Size: 35767 bytes --]
From f264b56e491cd4f89458b643286bcaf03b96b311 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:07:16 -0400
Subject: [PATCH 01/24] python3-numpy: update to 2.0.0.
---
.../python3-numpy/files/fenv-constants.patch | 10 ++++-----
.../patches/fix-pytest-warning.patch | 8 -------
.../patches/version-relaxation.patch | 14 ------------
srcpkgs/python3-numpy/template | 22 +++++++++++--------
4 files changed, 18 insertions(+), 36 deletions(-)
delete mode 100644 srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
delete mode 100644 srcpkgs/python3-numpy/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-numpy/files/fenv-constants.patch b/srcpkgs/python3-numpy/files/fenv-constants.patch
index 987ad4e346ffa5..075cac8a0820c6 100644
--- a/srcpkgs/python3-numpy/files/fenv-constants.patch
+++ b/srcpkgs/python3-numpy/files/fenv-constants.patch
@@ -1,11 +1,11 @@
---- numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:53:51.998825328 +1000
-+++ numpy/core/src/npymath/ieee754.c.src 2020-09-20 14:54:03.611889518 +1000
+--- numpy/_core/src/npymath/ieee754.c.src.orig 2024-07-02 11:50:48.519261116 -0400
++++ numpy/_core/src/npymath/ieee754.c.src 2024-07-02 11:51:06.336360850 -0400
@@ -8,6 +8,8 @@
#include "npy_math_private.h"
#include "numpy/utils.h"
+#include "fenv-constants.h"
+
- #ifndef HAVE_COPYSIGN
- double npy_copysign(double x, double y)
- {
+ /*
+ The below code is provided for compilers which do not yet provide C11 compatibility (gcc 4.5 and older)
+ */
diff --git a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch b/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
deleted file mode 100644
index 990ab80197542c..00000000000000
--- a/srcpkgs/python3-numpy/patches/fix-pytest-warning.patch
+++ /dev/null
@@ -1,8 +0,0 @@
---- a/pytest.ini 2023-06-16 22:48:37.211072200 -0300
-+++ b/pytest.ini 2023-06-19 22:52:00.230063231 -0300
-@@ -27,3 +27,5 @@
- ignore:\n\n `numpy.distutils`:DeprecationWarning
- # Ignore mypy >= 0.971 DeprecationWarnings
- ignore:path is deprecated\. Use files\(\) instead:DeprecationWarning:mypy
-+# Ignore warning raised when importing setuptools.command.
-+ ignore:pkg_resources is deprecated as an API:DeprecationWarning
diff --git a/srcpkgs/python3-numpy/patches/version-relaxation.patch b/srcpkgs/python3-numpy/patches/version-relaxation.patch
deleted file mode 100644
index f36972e5cc96a7..00000000000000
--- a/srcpkgs/python3-numpy/patches/version-relaxation.patch
+++ /dev/null
@@ -1,14 +0,0 @@
-As with SciPy, NumPy abuses specifications of *build requirements* as a means
-to control the environment under which wheels are built for distribution.
-
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -2,7 +2,7 @@
- build-backend = "mesonpy"
- requires = [
- "Cython>=0.29.34,<3.1",
-- "meson-python>=0.15.0,<0.16.0",
-+ "meson-python>=0.15.0",
- ]
-
- [project]
diff --git a/srcpkgs/python3-numpy/template b/srcpkgs/python3-numpy/template
index e6b6accb42ab4a..2adde47160b768 100644
--- a/srcpkgs/python3-numpy/template
+++ b/srcpkgs/python3-numpy/template
@@ -1,6 +1,6 @@
# Template file for 'python3-numpy'
pkgname=python3-numpy
-version=1.26.4
+version=2.0.0
revision=1
build_style=python3-pep517
build_helper="meson qemu"
@@ -19,7 +19,7 @@ license="BSD-3-Clause"
homepage="https://www.numpy.org/"
changelog="https://github.com/numpy/numpy/releases"
distfiles="${PYPI_SITE}/n/numpy/numpy-${version}.tar.gz"
-checksum=2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+checksum=cf5d1c9e6837f8af9f92b6bd3e86d513cdc11f60fd62185cc49ec7d1aba34864
alternatives="numpy:f2py:/usr/bin/f2py3"
build_options="openblas"
@@ -42,14 +42,10 @@ fi
post_patch() {
case "${XBPS_TARGET_MACHINE}" in
armv5tel-musl)
- cp "${FILESDIR}/fenv-constants.h" numpy/core/src/npymath/
+ cp "${FILESDIR}/fenv-constants.h" numpy/_core/src/npymath/
patch -Np0 -i "${FILESDIR}/fenv-constants.patch"
;;
esac
-
- if [ "$XBPS_TARGET_LIBC" = musl ] ; then
- vsed -i 's|"backtrace",||' numpy/core/setup_common.py
- fi
}
do_check() {
@@ -77,9 +73,17 @@ do_check() {
local testdir="${wrksrc}/.xbps-testdir/$(date +%s)"
python3 -m installer --destdir "${testdir}" dist/numpy*.whl
+ cd "${testdir}"
PATH="${testdir}/usr/bin:${PATH}" PYTHONPATH="${testdir}/${py3_sitelib}" \
- python3 runtests.py --no-build -- \
- -n "${XBPS_MAKEJOBS}" ${_skip+-k "not(${_skip#or})"}
+ python3 <<-EOF
+ import numpy
+ numpy.test(
+ extra_argv=[
+ '-n', '${XBPS_MAKEJOBS}',
+ ${_skip+'-k', 'not(${_skip#or})'}
+ ],
+ )
+ EOF
}
post_install() {
From bb8c03aa3585bb2c5b418c5724de26e92a1fafbd Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 15:09:53 -0400
Subject: [PATCH 02/24] common/build-helper/numpy.sh: update paths for
python3-numpy-2.0.0
---
common/build-helper/numpy.sh | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/common/build-helper/numpy.sh b/common/build-helper/numpy.sh
index e0856dbca7cf3c..0adce85e151fde 100644
--- a/common/build-helper/numpy.sh
+++ b/common/build-helper/numpy.sh
@@ -19,8 +19,8 @@ fi
# python3-setuptools finds numpy libs and headers on the host first;
# adding search paths up front allows the target to take priority
-CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
-LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/lib"
+CFLAGS+=" -I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
+LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/lib"
LDFLAGS+=" -L${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/random/lib"
# distutils from python3-numpy looks to environment variables F77 and
@@ -45,7 +45,7 @@ if [[ "${build_helper}" = *meson* ]]; then
mkdir -p "${XBPS_WRAPPERDIR}/meson"
cat > "${_npy_meson_cross}" <<-EOF
[properties]
- numpy-include-dir = '${_cross_py_site}/numpy/core/include'
+ numpy-include-dir = '${_cross_py_site}/numpy/_core/include'
pythran-include-dir = '${_cross_py_site}/pythran'
EOF
fi
From 8a7f40ee4e5fb74063153a7e6a02b203693b2ab1 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:18:04 -0400
Subject: [PATCH 03/24] gnuradio: rebuild against python3-numpy-2.0.0
---
srcpkgs/gnuradio/template | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/gnuradio/template b/srcpkgs/gnuradio/template
index 58127cedd3ddc6..f512f953f07137 100644
--- a/srcpkgs/gnuradio/template
+++ b/srcpkgs/gnuradio/template
@@ -1,8 +1,9 @@
# Template file for 'gnuradio'
pkgname=gnuradio
version=3.10.8.0
-revision=1
+revision=2
build_style=cmake
+build_helper="python3"
conf_files="/etc/gnuradio/conf.d/*"
configure_args="-DMATHJAX2_USE_ROOT=/usr/share/mathjax
-DZEROMQ_INCLUDE_DIRS=${XBPS_CROSS_BASE}/usr/include
@@ -27,7 +28,7 @@ python_version=3
if [ "$CROSS_BUILD" ]; then
# CMake fails when cross-compiling.
- configure_args+=" -DENABLE_TESTING=OFF"
+ configure_args+=" -DENABLE_TESTING=OFF -DPYBIND11_USE_CROSSCOMPILING=ON"
fi
if [ "${XBPS_TARGET_MACHINE%-musl}" = "i686" ]; then
From 941e75eaaf6cc8450876d250a40b3bf8f3b375e7 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:13:46 -0400
Subject: [PATCH 04/24] mypaint: rebuild against python3-numpy-2.0.0
---
srcpkgs/mypaint/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/mypaint/template b/srcpkgs/mypaint/template
index 1a1d995bd7e7cd..d5fdb8d67cf5ca 100644
--- a/srcpkgs/mypaint/template
+++ b/srcpkgs/mypaint/template
@@ -1,7 +1,7 @@
# Template file for 'mypaint'
pkgname=mypaint
version=2.0.1
-revision=5
+revision=6
build_style=python3-module
pycompile_dirs="/usr/share/mypaint"
hostmakedepends="swig pkg-config gettext python3-setuptools python3-numpy python3"
From d1857ba895065fa7eb7966e27c3f54f350c55b2e Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 05/24] opencv: rebuild against python3-numpy-2.0.0
---
srcpkgs/opencv/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/opencv/template b/srcpkgs/opencv/template
index aea4bfc3a265cf..0022fd863cc192 100644
--- a/srcpkgs/opencv/template
+++ b/srcpkgs/opencv/template
@@ -1,7 +1,7 @@
# Template file for 'opencv'
pkgname=opencv
version=4.6.0
-revision=6
+revision=7
create_wrksrc=yes
build_wrksrc=${pkgname}-${version}
build_style=cmake
@@ -33,7 +33,7 @@ make_check=no
if [ "$CROSS_BUILD" ]; then
# Tell opencv where to find python and numpy
configure_args+=" -DPYTHON3_INCLUDE_PATH=${XBPS_CROSS_BASE}/${py3_inc}
- -DPYTHON3_NUMPY_INCLUDE_DIRS=${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/core/include"
+ -DPYTHON3_NUMPY_INCLUDE_DIRS=${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include"
fi
case "$XBPS_TARGET_MACHINE" in
From 29adcf396c8c2fa259c88b78372d773bd8cd128b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:12:42 -0400
Subject: [PATCH 06/24] plplot: rebuild against python3-numpy-2.0.0
---
srcpkgs/plplot/template | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/plplot/template b/srcpkgs/plplot/template
index a80e12310e9338..b17eee96f21240 100644
--- a/srcpkgs/plplot/template
+++ b/srcpkgs/plplot/template
@@ -1,11 +1,14 @@
# Template file for 'plplot'
pkgname=plplot
version=5.15.0
-revision=5
+revision=6
build_style=cmake
-build_helper="qemu"
-configure_args="-DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
- -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3"
+build_helper="qemu numpy"
+configure_args="
+ -DPL_FREETYPE_FONT_PATH=/usr/share/fonts/TTF
+ -DCMAKE_NATIVE_BINARY_DIR=/usr -DPREBUILT_DOC=ON -DLUA_DIR=/usr/lib/lua/5.3
+ -DCMAKE_C_FLAGS=-I${XBPS_CROSS_BASE}/${py3_sitelib}/numpy/_core/include
+"
hostmakedepends="pkg-config gcc-fortran swig freefont-ttf
lua53 python3-numpy python3-setuptools plplot-devel"
makedepends="pango-devel cairo-devel freetype-devel libqhull-devel
From f1cd72946d8aa440b1bc1d602667d9bc7a7d83b4 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:07:21 -0400
Subject: [PATCH 07/24] python3-Bottleneck: update to 1.4.0.
---
srcpkgs/python3-Bottleneck/template | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/srcpkgs/python3-Bottleneck/template b/srcpkgs/python3-Bottleneck/template
index afafcd572ddb58..1c9400da55a2ec 100644
--- a/srcpkgs/python3-Bottleneck/template
+++ b/srcpkgs/python3-Bottleneck/template
@@ -1,9 +1,10 @@
# Template file for 'python3-Bottleneck'
pkgname=python3-Bottleneck
-version=1.3.7
+version=1.4.0
revision=1
-build_style=python3-module
-hostmakedepends="python3-setuptools python3-numpy"
+build_style=python3-pep517
+make_check_target=".xbps-testdir/*/${py3_sitelib}/bottleneck/tests"
+hostmakedepends="python3-setuptools python3-versioneer python3-wheel python3-numpy"
makedepends="python3-devel"
depends="python3-numpy"
checkdepends="python3-pytest-xdist $depends"
@@ -11,8 +12,8 @@ short_desc="Fast NumPy array functions written in C (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-2-Clause"
homepage="https://github.com/kwgoodman/bottleneck"
-distfiles="${PYPI_SITE}/B/Bottleneck/Bottleneck-${version}.tar.gz"
-checksum=e1467e373ad469da340ed0ff283214d6531cc08bfdca2083361a3aa6470681f8
+distfiles="${PYPI_SITE}/b/bottleneck/bottleneck-${version}.tar.gz"
+checksum=beb36df519b8709e7d357c0c9639b03b885ca6355bbf5e53752c685de51605b8
post_install() {
rm -f ${DESTDIR}/usr/lib/python*/site-packages/bottleneck/LICENSE
From 071233fd3b7f0531217a627a3b798a491c456537 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 14:06:53 -0400
Subject: [PATCH 08/24] python3-PyOpenGL-accelerate: rebuild without
python3-numpy
---
srcpkgs/python3-PyOpenGL-accelerate/template | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/srcpkgs/python3-PyOpenGL-accelerate/template b/srcpkgs/python3-PyOpenGL-accelerate/template
index cec8b8c0bc6f4d..2161cd9b433d47 100644
--- a/srcpkgs/python3-PyOpenGL-accelerate/template
+++ b/srcpkgs/python3-PyOpenGL-accelerate/template
@@ -1,11 +1,11 @@
# Template file for 'python3-PyOpenGL-accelerate'
pkgname=python3-PyOpenGL-accelerate
version=3.1.7
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython"
-makedepends="python3-devel python3-numpy"
-depends="python3-numpy"
+makedepends="python3-devel"
+depends="python3"
short_desc="Acceleration code for PyOpenGL (Python3)"
maintainer="Alain Kalker <a.c.kalker@gmail.com>"
license="BSD-3-Clause"
From 0312a48a1ff85cbb6614d303b174dba09281a702 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:33:54 -0400
Subject: [PATCH 09/24] python3-h5py: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-h5py/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-h5py/template b/srcpkgs/python3-h5py/template
index e71350fbf60ecb..c77df7c1123719 100644
--- a/srcpkgs/python3-h5py/template
+++ b/srcpkgs/python3-h5py/template
@@ -1,7 +1,7 @@
# Template file for 'python3-h5py'
pkgname=python3-h5py
version=3.11.0
-revision=1
+revision=2
build_style=python3-module
build_helper="numpy"
hostmakedepends="python3-setuptools python3-Cython0.29 python3-pkgconfig"
From 882825a4580cce56d05e59329ef2c01ef7417b2b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 12:56:19 -0400
Subject: [PATCH 10/24] python3-matplotlib: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-matplotlib/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-matplotlib/template b/srcpkgs/python3-matplotlib/template
index d82d890245dd88..56af299ac222f2 100644
--- a/srcpkgs/python3-matplotlib/template
+++ b/srcpkgs/python3-matplotlib/template
@@ -1,7 +1,7 @@
# Template file for 'python3-matplotlib'
pkgname=python3-matplotlib
version=3.9.1
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_build_args="-Csetup-args=-Dsystem-freetype=true
From 6a5244971e73bc9680f1c223eda060fa0e007df0 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 11/24] python3-numexpr: update to 2.10.1.
---
srcpkgs/python3-numexpr/template | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/srcpkgs/python3-numexpr/template b/srcpkgs/python3-numexpr/template
index 4e4b9dc3177840..d148218d101708 100644
--- a/srcpkgs/python3-numexpr/template
+++ b/srcpkgs/python3-numexpr/template
@@ -1,19 +1,20 @@
# Template file for 'python3-numexpr'
pkgname=python3-numexpr
-version=2.8.3
-revision=3
-build_style=python3-module
-build_helper=numpy
-hostmakedepends="python3-wheel"
+version=2.10.1
+revision=1
+build_style=python3-pep517
+build_helper="numpy"
+make_check_args="-k not(test_max_threads_unset)"
+hostmakedepends="python3-setuptools python3-wheel"
makedepends="python3-devel python3-numpy"
-depends="python3-numpy python3-packaging"
-checkdepends="${depends} python3-pytest-xdist"
+depends="python3-numpy"
+checkdepends="${depends} python3-pytest"
short_desc="Fast numerical expression evaluator for NumPy (Python3)"
maintainer="Orphaned <orphan@voidlinux.org>"
license="MIT"
homepage="https://github.com/pydata/numexpr"
distfiles="https://github.com/pydata/numexpr/archive/v${version}.tar.gz"
-checksum=389ceefca74eff30ec3fd03fc4c3b7ab3df8f22d1f235117a392ce702ed208c0
+checksum=e499bd19a7fd9803d5ec1b2cff2e0a11a2f01a109d5326e5a09eff590448c793
pre_check() {
python3 setup.py build_ext --inplace
From 333d4f29f53e13995d2ff28edd0e2fb472eea26a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:03 -0400
Subject: [PATCH 12/24] python3-numpy-stl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-numpy-stl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-numpy-stl/template b/srcpkgs/python3-numpy-stl/template
index 9257dca68817b6..72a7448c990aad 100644
--- a/srcpkgs/python3-numpy-stl/template
+++ b/srcpkgs/python3-numpy-stl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-numpy-stl'
pkgname=python3-numpy-stl
version=2.17.1
-revision=3
+revision=4
build_style=python3-module
build_helper="numpy"
# skip flake8 tests
From 11cbee9f4ed3562b0ae39bf289207ad761ad3a70 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:58:02 -0400
Subject: [PATCH 13/24] python3-pandas: update to 2.2.2.
---
.../patches/version-relaxation.patch | 24 -------------------
srcpkgs/python3-pandas/template | 10 ++++----
2 files changed, 6 insertions(+), 28 deletions(-)
delete mode 100644 srcpkgs/python3-pandas/patches/version-relaxation.patch
diff --git a/srcpkgs/python3-pandas/patches/version-relaxation.patch b/srcpkgs/python3-pandas/patches/version-relaxation.patch
deleted file mode 100644
index c94e5fa170eebe..00000000000000
--- a/srcpkgs/python3-pandas/patches/version-relaxation.patch
+++ /dev/null
@@ -1,24 +0,0 @@
---- ./pyproject.toml.orig 2023-10-02 14:33:56.359267774 -0400
-+++ ./pyproject.toml 2023-10-02 14:35:29.662565059 -0400
-@@ -2,8 +2,8 @@
- # Minimum requirements for the build system to execute.
- # See https://github.com/scipy/scipy/pull/12940 for the AIX issue.
- requires = [
-- "meson-python==0.13.1",
-- "meson==1.2.1",
-+ "meson-python",
-+ "meson",
- "wheel",
- "Cython>=0.29.33,<3", # Note: sync with setup.py, environment.yml and asv.conf.json
- # Note: numpy 1.25 has a backwards compatible C API by default
---- ./meson.build.orig 2023-10-02 14:42:02.161816469 -0400
-+++ ./meson.build 2023-09-20 15:24:13.000000000 -0400
-@@ -4,7 +4,7 @@
- 'c', 'cpp', 'cython',
- version: run_command(['generate_version.py', '--print'], check: true).stdout().strip(),
- license: 'BSD-3',
-- meson_version: '>=1.2.1',
-+ meson_version: '>=1.2.0',
- default_options: [
- 'buildtype=release',
- 'c_std=c99'
diff --git a/srcpkgs/python3-pandas/template b/srcpkgs/python3-pandas/template
index c8e610dee33729..79e6f8462349cd 100644
--- a/srcpkgs/python3-pandas/template
+++ b/srcpkgs/python3-pandas/template
@@ -1,10 +1,12 @@
# Template file for 'python3-pandas'
pkgname=python3-pandas
-version=2.1.4
-revision=1
+version=2.2.2
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
-hostmakedepends="python3-meson-python python3-wheel python3-Cython0.29
+# Pandas imposes strict and unnecessary restrictions on build dependencies
+make_build_args="--skip-dependency-check"
+hostmakedepends="python3-meson-python python3-wheel python3-Cython
python3-numpy python3-versioneer pkg-config"
makedepends="python3-devel python3-numpy python3-dateutil python3-pytz"
depends="python3-numpy python3-dateutil python3-pytz"
@@ -14,7 +16,7 @@ license="BSD-3-Clause"
homepage="https://pandas.pydata.org/"
changelog="https://pandas.pydata.org/pandas-docs/stable/whatsnew/index.html"
distfiles="https://github.com/pandas-dev/pandas/archive/v${version}.tar.gz"
-checksum=00e0b049bac3d60c5701cae1f2fe57314f6ab8ae302b28953d4f9337817f6fc1
+checksum=79bc6fb5505afd27875c93fec27cece74318470c4e274ec7ef48b16f046dc006
# Builds seem to sometimes have missing symbol problems;
# the intermittent nature suggests this might be a race
disable_parallel_build=yes
From 996d39bcd2b33d5f19fd686efcfe4f37122213c0 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:15:55 -0400
Subject: [PATCH 14/24] python3-pyFFTW: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyFFTW/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyFFTW/template b/srcpkgs/python3-pyFFTW/template
index ba1f6fc9e158ab..414b77b639ada5 100644
--- a/srcpkgs/python3-pyFFTW/template
+++ b/srcpkgs/python3-pyFFTW/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyFFTW'
pkgname=python3-pyFFTW
version=0.13.1
-revision=2
+revision=3
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="fftw-devel python3-devel"
From c4e078bac1225e4bcc28f6d8218e932bd34977c7 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 15/24] python3-pyopencl: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pyopencl/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pyopencl/template b/srcpkgs/python3-pyopencl/template
index f57ba9421ed35a..09320616592f80 100644
--- a/srcpkgs/python3-pyopencl/template
+++ b/srcpkgs/python3-pyopencl/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pyopencl'
pkgname=python3-pyopencl
version=2024.2.7
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel python3-numpy
python3-scikit-build-core cmake ninja python3-nanobind"
From 72c19286f15b0e3d784e52635e6d678b33c2f1a5 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 16/24] python3-pywt: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-pywt/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-pywt/template b/srcpkgs/python3-pywt/template
index b4890de4450b45..9930684cedcff0 100644
--- a/srcpkgs/python3-pywt/template
+++ b/srcpkgs/python3-pywt/template
@@ -1,7 +1,7 @@
# Template file for 'python3-pywt'
pkgname=python3-pywt
version=1.6.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
make_check_target=".xbps-testdir/*/${py3_sitelib}/pywt/tests"
From 4f2b51f1c6118dd2f1058c484bcdad6906c6dfab Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 17:03:26 -0400
Subject: [PATCH 17/24] pythran: fix required gast version
---
srcpkgs/pythran/patches/gast-0.6.patch | 76 ++++++++++++++++++++++++++
srcpkgs/pythran/template | 2 +-
2 files changed, 77 insertions(+), 1 deletion(-)
create mode 100644 srcpkgs/pythran/patches/gast-0.6.patch
diff --git a/srcpkgs/pythran/patches/gast-0.6.patch b/srcpkgs/pythran/patches/gast-0.6.patch
new file mode 100644
index 00000000000000..87dfcdcf450bce
--- /dev/null
+++ b/srcpkgs/pythran/patches/gast-0.6.patch
@@ -0,0 +1,76 @@
+From 840a0e706ec39963aec6bcd1f118bf33177c20b4 Mon Sep 17 00:00:00 2001
+From: serge-sans-paille <serge.guelton@telecom-bretagne.eu>
+Date: Sat, 29 Jun 2024 19:13:02 +0200
+Subject: [PATCH] Bump gast requirement to 0.6.0
+
+This mostly helps for harmonious behavior wrt. gast.dump
+---
+ docs/TUTORIAL.rst | 8 ++++----
+ pythran/utils.py | 2 +-
+ requirements.txt | 2 +-
+ 3 files changed, 6 insertions(+), 6 deletions(-)
+
+diff --git a/docs/TUTORIAL.rst b/docs/TUTORIAL.rst
+index 09f6902f9..7692547eb 100644
+--- a/docs/TUTORIAL.rst
++++ b/docs/TUTORIAL.rst
+@@ -20,7 +20,7 @@ Python ships a standard module, ``ast`` to turn Python code into an AST. For ins
+ >>> code = "a=1"
+ >>> tree = ast.parse(code) # turn the code into an AST
+ >>> print(ast.dump(tree)) # view it as a string
+- Module(body=[Assign(targets=[Name(id='a', ctx=Store(), annotation=None, type_comment=None)], value=Constant(value=1, kind=None), type_comment=None)], type_ignores=[])
++ Module(body=[Assign(targets=[Name(id='a', ctx=Store())], value=Constant(value=1, kind=None))])
+
+ Deciphering the above line, one learns that the single assignment is parsed as
+ a module containing a single statement, which is an assignment to a single
+@@ -33,7 +33,7 @@ Eventually, one needs to parse more complex codes, and things get a bit more cry
+ ... return n if n< 2 else fib(n-1) + fib(n-2)"""
+ >>> tree = ast.parse(fib_src)
+ >>> print(ast.dump(tree))
+- Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param(), annotation=None, type_comment=None)], posonlyargs=[], vararg=None, kwonlyargs=[], kw_defaults=[], kwarg=None, defaults=[]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load(), annotation=None, type_comment=None), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=1, kind=None))], keywords=[]), op=Add(), right=Call(func=Name(id='fib', ctx=Load(), annotation=None, type_comment=None), args=[BinOp(left=Name(id='n', ctx=Load(), annotation=None, type_comment=None), op=Sub(), right=Constant(value=2, kind=None))], keywords=[]))))], decorator_list=[], returns=None, type_comment=None)], type_ignores=[])
++ Module(body=[FunctionDef(name='fib', args=arguments(args=[Name(id='n', ctx=Param())]), body=[Return(value=IfExp(test=Compare(left=Name(id='n', ctx=Load()), ops=[Lt()], comparators=[Constant(value=2, kind=None)]), body=Name(id='n', ctx=Load()), orelse=BinOp(left=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=1, kind=None))]), op=Add(), right=Call(func=Name(id='fib', ctx=Load()), args=[BinOp(left=Name(id='n', ctx=Load()), op=Sub(), right=Constant(value=2, kind=None))]))))])])
+
+ The idea remains the same. The whole Python syntax is described in
+ http://docs.python.org/2/library/ast.html and is worth a glance, otherwise
+@@ -199,7 +199,7 @@ constant expressions. In the previous code, there is only two constant
+
+ >>> ce = pm.gather(analyses.ConstantExpressions, tree)
+ >>> sorted(map(ast.dump, ce))
+- ["Attribute(value=Name(id='math', ctx=Load(), annotation=None, type_comment=None), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
++ ["Attribute(value=Name(id='math', ctx=Load()), attr='cos', ctx=Load())", 'Constant(value=3, kind=None)']
+
+ One of the most critical analyse of Pythran is the points-to analysis. There
+ are two flavors of this analyse, one that computes an over-set of the aliased
+@@ -210,7 +210,7 @@ variable, and one that computes an under set. ``Aliases`` computes an over-set::
+ >>> al = pm.gather(analyses.Aliases, tree)
+ >>> returned = tree.body[-1].body[-1].value
+ >>> print(ast.dump(returned))
+- Name(id='b', ctx=Load(), annotation=None, type_comment=None)
++ Name(id='b', ctx=Load())
+ >>> sorted(a.id for a in al[returned])
+ ['c', 'd']
+
+diff --git a/pythran/utils.py b/pythran/utils.py
+index 2d7a67327..55a7e8ad6 100644
+--- a/pythran/utils.py
++++ b/pythran/utils.py
+@@ -106,7 +106,7 @@ def get_variable(assignable):
+ ... slice=ast.Name('j', ast.Load(), None, None),
+ ... ctx=ast.Load())
+ >>> ast.dump(get_variable(ref))
+- "Name(id='a', ctx=Load(), annotation=None, type_comment=None)"
++ "Name(id='a', ctx=Load())"
+ """
+ msg = "Only name and subscript can be assigned."
+ assert isinstance(assignable, (ast.Name, ast.Subscript)), msg
+diff --git a/requirements.txt b/requirements.txt
+index fd6a738e5..c7a25c52a 100644
+--- a/requirements.txt
++++ b/requirements.txt
+@@ -1,5 +1,5 @@
+ ply>=3.4
+ setuptools
+-gast~=0.5.0
++gast~=0.6.0
+ numpy
+ beniget~=0.4.0
diff --git a/srcpkgs/pythran/template b/srcpkgs/pythran/template
index a717256074d6d3..9a8761a767f67e 100644
--- a/srcpkgs/pythran/template
+++ b/srcpkgs/pythran/template
@@ -1,7 +1,7 @@
# Template file for 'pythran'
pkgname=pythran
version=0.16.1
-revision=1
+revision=2
build_style=python3-pep517
hostmakedepends="python3-setuptools python3-wheel"
depends="python3-ply python3-gast python3-beniget python3-numpy
From 32b016de7d4814cc97a5f0d05576bd63e0474979 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 18/24] python3-scikit-image: rebuild against
python3-numpy-2.0.0
---
srcpkgs/python3-scikit-image/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scikit-image/template b/srcpkgs/python3-scikit-image/template
index 144193cd39b330..914aa23ce673f2 100644
--- a/srcpkgs/python3-scikit-image/template
+++ b/srcpkgs/python3-scikit-image/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scikit-image'
pkgname=python3-scikit-image
version=0.24.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
hostmakedepends="python3-build python3-installer python3-meson-python
From a977e0a1c713cc60ef10de9ca05d04a6cb70dc28 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:49:07 -0400
Subject: [PATCH 19/24] python3-scikit-learn: update to 1.5.0.
---
.../patches/numpy-version.patch | 11 ----------
srcpkgs/python3-scikit-learn/template | 20 +++++++------------
2 files changed, 7 insertions(+), 24 deletions(-)
delete mode 100644 srcpkgs/python3-scikit-learn/patches/numpy-version.patch
diff --git a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch b/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
deleted file mode 100644
index 0ffb53e3433e9b..00000000000000
--- a/srcpkgs/python3-scikit-learn/patches/numpy-version.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- a/pyproject.toml
-+++ b/pyproject.toml
-@@ -9,7 +9,7 @@
- # wheels on PyPI
- #
- # see: https://github.com/scipy/oldest-supported-numpy/blob/main/setup.cfg
-- "oldest-supported-numpy; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
-+ "numpy>=1.23.2; python_version!='3.10' or platform_system!='Windows' or platform_python_implementation=='PyPy'",
- # For CPython 3.10 under Windows, SciPy requires NumPy 1.22.3 while the
- # oldest supported NumPy is defined as 1.21.6. We therefore need to force
- # it for this specific configuration. For details, see
diff --git a/srcpkgs/python3-scikit-learn/template b/srcpkgs/python3-scikit-learn/template
index a6364f089c4f4d..c0983fe4624dd3 100644
--- a/srcpkgs/python3-scikit-learn/template
+++ b/srcpkgs/python3-scikit-learn/template
@@ -1,27 +1,21 @@
# Template file for 'python3-scikit-learn'
pkgname=python3-scikit-learn
-version=1.3.0
-revision=2
+version=1.5.0
+revision=1
build_style=python3-pep517
-hostmakedepends="python3-setuptools python3-Cython python3-numpy python3-scipy
- python3-wheel"
-makedepends="python3-devel libgomp-devel"
+build_helper="numpy meson"
+hostmakedepends="python3-Cython python3-numpy python3-scipy
+ python3-meson-python pkg-config"
+makedepends="python3-devel python3-numpy libgomp-devel"
depends="python3-numpy python3-scipy python3-joblib python3-threadpoolctl"
short_desc="Python3 modules for machine learning and data mining"
maintainer="Orphaned <orphan@voidlinux.org>"
license="BSD-3-Clause"
homepage="https://scikit-learn.org/"
distfiles="https://github.com/scikit-learn/scikit-learn/archive/${version}.tar.gz"
-checksum=ead129f466a0859555ce4f41280ae06623ef3255efff0b1692c57f15e39767b5
+checksum=cd2aac2b566c7e740d34aabb4737864c74ba33c29aad7101fbf1bab2931c02dc
make_check=no # tests don't work properly unless package is installed
-export SKLEARN_BUILD_PARALLEL="${XBPS_MAKEJOBS}"
-
-if [ "$CROSS_BUILD" ]; then
- # Without this, setup.py tries to run a target executable
- export PYTHON_CROSSENV=1
-fi
-
post_install() {
vlicense COPYING
}
From 1d129267e323990b25b183186cba948a688cc873 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:10:18 -0400
Subject: [PATCH 20/24] python3-scipy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-scipy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-scipy/template b/srcpkgs/python3-scipy/template
index 41cf9ddb873aab..e35cd25b4595c6 100644
--- a/srcpkgs/python3-scipy/template
+++ b/srcpkgs/python3-scipy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-scipy'
pkgname=python3-scipy
version=1.14.0
-revision=1
+revision=2
build_style=python3-pep517
build_helper="meson numpy"
# SciPy imposes strict and unnecessary restrictions on build dependencies
From 5a3cc617209e75477aabb8ceb5153ae473ff4458 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 21/24] python3-tables: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-tables/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-tables/template b/srcpkgs/python3-tables/template
index 81b7351b972649..38c93292ea4bf8 100644
--- a/srcpkgs/python3-tables/template
+++ b/srcpkgs/python3-tables/template
@@ -1,7 +1,7 @@
# Template file for 'python3-tables'
pkgname=python3-tables
version=3.7.0
-revision=3
+revision=4
build_style=python3-module
build_helper=numpy
# XXX: c-blosc (using internal for now)
From aedec26a750aa65e34eeed0ba0d0403845796026 Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 22/24] python3-vispy: rebuild against python3-numpy-2.0.0
---
srcpkgs/python3-vispy/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/python3-vispy/template b/srcpkgs/python3-vispy/template
index 60dc8ae4b82996..6411756abc3b71 100644
--- a/srcpkgs/python3-vispy/template
+++ b/srcpkgs/python3-vispy/template
@@ -1,7 +1,7 @@
# Template file for 'python3-vispy'
pkgname=python3-vispy
version=0.6.1
-revision=8
+revision=9
build_style=python3-module
build_helper=numpy
hostmakedepends="python3-setuptools python3-Cython python3-numpy"
From d9fc89930af39973c1c48240b3ef7b6917e9500b Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:57:27 -0400
Subject: [PATCH 23/24] urh: rebuild against python3-numpy-2.0.0
---
srcpkgs/urh/template | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/srcpkgs/urh/template b/srcpkgs/urh/template
index f86a7ea530c762..7c109b044b1462 100644
--- a/srcpkgs/urh/template
+++ b/srcpkgs/urh/template
@@ -1,7 +1,7 @@
# Template file for 'urh'
pkgname=urh
version=2.9.6
-revision=1
+revision=2
build_style=python3-module
hostmakedepends="python3-setuptools python3-Cython0.29 python3-numpy"
makedepends="python3-devel python3-PyQt5 libairspy-devel librtlsdr-devel
From 383c029963c4ad8b8da4e3b3b6ea184288870d5a Mon Sep 17 00:00:00 2001
From: "Andrew J. Hesford" <ajh@sideband.org>
Date: Mon, 1 Jul 2024 13:08:40 -0400
Subject: [PATCH 24/24] wxPython: fix runtime dependencies
---
srcpkgs/wxPython/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/wxPython/template b/srcpkgs/wxPython/template
index 7f4c8a21e18589..0d29630771a48f 100644
--- a/srcpkgs/wxPython/template
+++ b/srcpkgs/wxPython/template
@@ -1,14 +1,14 @@
# Template file for 'wxPython'
pkgname=wxPython
version=4.2.1
-revision=4
+revision=5
build_style=python3-module
make_build_args="--skip-build"
make_install_args="--skip-build"
hostmakedepends="pkg-config python3-setuptools python3-pathlib2 python3-Cython0.29"
makedepends="python3-devel wxWidgets-gtk3-devel SDL2-devel
gst-plugins-base1-devel"
-depends="python3 python3-six python3-numpy python3-Pillow"
+depends="python3-six"
short_desc="Python bindings for wxWidgets"
maintainer="Orphaned <orphan@voidlinux.org>"
license="custom:wxWindows"
^ permalink raw reply [flat|nested] 13+ messages in thread