* [PR PATCH] R: Use OpenBLAS where available
@ 2021-01-14 0:59 olafmersmann
2021-01-14 1:00 ` [PR PATCH] [Updated] " olafmersmann
` (2 more replies)
0 siblings, 3 replies; 4+ messages in thread
From: olafmersmann @ 2021-01-14 0:59 UTC (permalink / raw)
To: ml
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There is a new pull request by olafmersmann against master on the void-packages repository
https://github.com/olafmersmann/void-packages R
https://github.com/void-linux/void-packages/pull/27908
R: Use OpenBLAS where available
Also fixes building of manuals and checks.
A patch file from https://github.com/void-linux/void-packages/pull/27908.patch is attached
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[-- Attachment #2: github-pr-R-27908.patch --]
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From a6100a633810442b347764b809d097b62e0114da Mon Sep 17 00:00:00 2001
From: Olaf Mersmann <olafm@p-value.net>
Date: Sun, 10 Jan 2021 00:20:12 +0100
Subject: [PATCH] R: Use OpenBLAS where available
Also fixes building of manuals and checks.
---
srcpkgs/R/template | 23 +++++++++++++++++++----
1 file changed, 19 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/R/template b/srcpkgs/R/template
index def4ddaa50e..104a5a7b295 100644
--- a/srcpkgs/R/template
+++ b/srcpkgs/R/template
@@ -1,17 +1,21 @@
# Template file for 'R'
pkgname=R
version=4.0.3
-revision=1
+revision=2
build_style=gnu-configure
configure_args="--docdir=/usr/share/doc/R rdocdir=/usr/share/doc/R
- --with-lapack --with-blas --enable-R-shlib --with-tcltk
+ --with-blas$(vopt_if openblas '="-lopenblas"') --with-lapack
+ --enable-R-shlib --with-tcltk
--enable-memory-profiling
LIBnn=lib"
hostmakedepends="gcc-fortran pkg-config perl less which"
makedepends="libgomp-devel readline-devel libXmu-devel libXt-devel
libpng-devel libjpeg-turbo-devel tiff-devel cairo-devel icu-devel
- lapack-devel blas-devel zlib-devel bzip2-devel pcre2-devel liblzma-devel
- libcurl-devel tcl-devel tk-devel libxml2-devel"
+ zlib-devel bzip2-devel pcre2-devel liblzma-devel
+ libcurl-devel tcl-devel tk-devel libxml2-devel
+ texlive texlive-fontsextra texinfo
+ $(vopt_if openblas openblas-devel 'blas-devel lapack-devel')"
+checkdepends="tzdata tar"
depends="xdg-utils less which"
short_desc="System for statistical computation and graphics"
maintainer="Florian Wagner <florian@wagner-flo.net>"
@@ -23,6 +27,17 @@ checksum=09983a8a78d5fb6bc45d27b1c55f9ba5265f78fa54a55c13ae691f87c5bb9e0d
nocross=yes
shlib_provides="libR.so"
+build_options="openblas"
+desc_option_openblas="Enable support for openblas accelerated linear algebra"
+
+case "$XBPS_TARGET_MACHINE" in
+ x86_64*|i686*|aarch64*|armv[67]*|ppc64*)
+ # Prefer accelerated routines where available
+ build_options_default="openblas"
+ ;;
+ *) ;;
+esac
+
pre_configure() {
export R_BROWSER=/usr/bin/xdg-open
export R_PDFVIEWER=/usr/bin/xdg-open
^ permalink raw reply [flat|nested] 4+ messages in thread* Re: [PR PATCH] [Updated] R: Use OpenBLAS where available
2021-01-14 0:59 [PR PATCH] R: Use OpenBLAS where available olafmersmann
@ 2021-01-14 1:00 ` olafmersmann
2021-01-21 22:21 ` olafmersmann
2021-01-22 4:26 ` [PR PATCH] [Merged]: " ericonr
2 siblings, 0 replies; 4+ messages in thread
From: olafmersmann @ 2021-01-14 1:00 UTC (permalink / raw)
To: ml
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There is an updated pull request by olafmersmann against master on the void-packages repository
https://github.com/olafmersmann/void-packages R
https://github.com/void-linux/void-packages/pull/27908
R: Use OpenBLAS where available
Also fixes building of manuals and checks.
A patch file from https://github.com/void-linux/void-packages/pull/27908.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-R-27908.patch --]
[-- Type: text/x-diff, Size: 2110 bytes --]
From d7fa9cac13c6700c0bc1ad3bd21b2fb8846c28e4 Mon Sep 17 00:00:00 2001
From: Olaf Mersmann <olafm@p-value.net>
Date: Sun, 10 Jan 2021 00:20:12 +0100
Subject: [PATCH] R: Use OpenBLAS where available
Also fixes building of manuals and checks.
---
srcpkgs/R/template | 23 +++++++++++++++++++----
1 file changed, 19 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/R/template b/srcpkgs/R/template
index def4ddaa50e..eb0befab4c0 100644
--- a/srcpkgs/R/template
+++ b/srcpkgs/R/template
@@ -1,18 +1,22 @@
# Template file for 'R'
pkgname=R
version=4.0.3
-revision=1
+revision=2
build_style=gnu-configure
configure_args="--docdir=/usr/share/doc/R rdocdir=/usr/share/doc/R
- --with-lapack --with-blas --enable-R-shlib --with-tcltk
+ --with-blas$(vopt_if openblas '="-lopenblas"') --with-lapack
+ --enable-R-shlib --with-tcltk
--enable-memory-profiling
LIBnn=lib"
hostmakedepends="gcc-fortran pkg-config perl less which"
makedepends="libgomp-devel readline-devel libXmu-devel libXt-devel
libpng-devel libjpeg-turbo-devel tiff-devel cairo-devel icu-devel
- lapack-devel blas-devel zlib-devel bzip2-devel pcre2-devel liblzma-devel
- libcurl-devel tcl-devel tk-devel libxml2-devel"
+ zlib-devel bzip2-devel pcre2-devel liblzma-devel
+ libcurl-devel tcl-devel tk-devel libxml2-devel
+ texlive texlive-fontsextra texinfo
+ $(vopt_if openblas openblas-devel 'blas-devel lapack-devel')"
depends="xdg-utils less which"
+checkdepends="tzdata tar"
short_desc="System for statistical computation and graphics"
maintainer="Florian Wagner <florian@wagner-flo.net>"
license="GPL-2.0-or-later"
@@ -23,6 +27,17 @@ checksum=09983a8a78d5fb6bc45d27b1c55f9ba5265f78fa54a55c13ae691f87c5bb9e0d
nocross=yes
shlib_provides="libR.so"
+build_options="openblas"
+desc_option_openblas="Enable support for openblas accelerated linear algebra"
+
+case "$XBPS_TARGET_MACHINE" in
+ x86_64*|i686*|aarch64*|armv[67]*|ppc64*)
+ # Prefer accelerated routines where available
+ build_options_default="openblas"
+ ;;
+ *) ;;
+esac
+
pre_configure() {
export R_BROWSER=/usr/bin/xdg-open
export R_PDFVIEWER=/usr/bin/xdg-open
^ permalink raw reply [flat|nested] 4+ messages in thread* Re: [PR PATCH] [Updated] R: Use OpenBLAS where available
2021-01-14 0:59 [PR PATCH] R: Use OpenBLAS where available olafmersmann
2021-01-14 1:00 ` [PR PATCH] [Updated] " olafmersmann
@ 2021-01-21 22:21 ` olafmersmann
2021-01-22 4:26 ` [PR PATCH] [Merged]: " ericonr
2 siblings, 0 replies; 4+ messages in thread
From: olafmersmann @ 2021-01-21 22:21 UTC (permalink / raw)
To: ml
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There is an updated pull request by olafmersmann against master on the void-packages repository
https://github.com/olafmersmann/void-packages R
https://github.com/void-linux/void-packages/pull/27908
R: Use OpenBLAS where available
Also fixes building of manuals and checks.
A patch file from https://github.com/void-linux/void-packages/pull/27908.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-R-27908.patch --]
[-- Type: text/x-diff, Size: 2303 bytes --]
From cdea21623b9b59959f88f4c6f5ce621dfc87e2aa Mon Sep 17 00:00:00 2001
From: Olaf Mersmann <olafm@p-value.net>
Date: Sun, 10 Jan 2021 00:20:12 +0100
Subject: [PATCH] R: Use OpenBLAS where available
Also fixes building of manuals and checks.
---
srcpkgs/R/template | 28 ++++++++++++++++++++++++----
1 file changed, 24 insertions(+), 4 deletions(-)
diff --git a/srcpkgs/R/template b/srcpkgs/R/template
index def4ddaa50e..1ac1b9667a2 100644
--- a/srcpkgs/R/template
+++ b/srcpkgs/R/template
@@ -1,18 +1,22 @@
# Template file for 'R'
pkgname=R
version=4.0.3
-revision=1
+revision=2
build_style=gnu-configure
configure_args="--docdir=/usr/share/doc/R rdocdir=/usr/share/doc/R
- --with-lapack --with-blas --enable-R-shlib --with-tcltk
+ --with-blas$(vopt_if openblas '="-lopenblas"') --with-lapack
+ --enable-R-shlib --with-tcltk
--enable-memory-profiling
LIBnn=lib"
hostmakedepends="gcc-fortran pkg-config perl less which"
makedepends="libgomp-devel readline-devel libXmu-devel libXt-devel
libpng-devel libjpeg-turbo-devel tiff-devel cairo-devel icu-devel
- lapack-devel blas-devel zlib-devel bzip2-devel pcre2-devel liblzma-devel
- libcurl-devel tcl-devel tk-devel libxml2-devel"
+ zlib-devel bzip2-devel pcre2-devel liblzma-devel
+ libcurl-devel tcl-devel tk-devel libxml2-devel
+ texlive texlive-fontsextra texinfo
+ $(vopt_if openblas openblas-devel 'blas-devel lapack-devel')"
depends="xdg-utils less which"
+checkdepends="tzdata tar"
short_desc="System for statistical computation and graphics"
maintainer="Florian Wagner <florian@wagner-flo.net>"
license="GPL-2.0-or-later"
@@ -23,11 +27,27 @@ checksum=09983a8a78d5fb6bc45d27b1c55f9ba5265f78fa54a55c13ae691f87c5bb9e0d
nocross=yes
shlib_provides="libR.so"
+build_options="openblas"
+
+case "$XBPS_TARGET_MACHINE" in
+ x86_64*|i686*|aarch64*|armv[67]*|ppc64*)
+ # Prefer accelerated routines where available
+ build_options_default="openblas"
+ ;;
+ *) ;;
+esac
+
pre_configure() {
export R_BROWSER=/usr/bin/xdg-open
export R_PDFVIEWER=/usr/bin/xdg-open
}
+do_check() {
+ if [ "${XBPS_CHECK_PKGS}" = full ]; then
+ ( TEST_MC_CORES=${XBPS_MAKEJOBS} make check )
+ fi
+}
+
post_install() {
# Sanitize Makeconf flags
vsed -i -e 's/^\(CFLAGS\|CXXFLAGS\|CXX1XFLAGS\|FFLAGS\|SAFE_FFLAGS\) = .*/\1 = -O2 -g $(LTO)/' \
^ permalink raw reply [flat|nested] 4+ messages in thread* Re: [PR PATCH] [Merged]: R: Use OpenBLAS where available
2021-01-14 0:59 [PR PATCH] R: Use OpenBLAS where available olafmersmann
2021-01-14 1:00 ` [PR PATCH] [Updated] " olafmersmann
2021-01-21 22:21 ` olafmersmann
@ 2021-01-22 4:26 ` ericonr
2 siblings, 0 replies; 4+ messages in thread
From: ericonr @ 2021-01-22 4:26 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 207 bytes --]
There's a merged pull request on the void-packages repository
R: Use OpenBLAS where available
https://github.com/void-linux/void-packages/pull/27908
Description:
Also fixes building of manuals and checks.
^ permalink raw reply [flat|nested] 4+ messages in thread
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Thread overview: 4+ messages (download: mbox.gz / follow: Atom feed)
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2021-01-14 0:59 [PR PATCH] R: Use OpenBLAS where available olafmersmann
2021-01-14 1:00 ` [PR PATCH] [Updated] " olafmersmann
2021-01-21 22:21 ` olafmersmann
2021-01-22 4:26 ` [PR PATCH] [Merged]: " ericonr
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