From 6b7c66b20e56a10b2bfb2a0fd5d9a2fdf6a45ad2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Sun, 8 Oct 2023 19:40:27 -0300 Subject: [PATCH 1/5] python3-cysignals: update to 1.11.4, fix cross-build. --- .../python3-cysignals/patches/fix-cross.patch | 23 +++++++++++++++++++ srcpkgs/python3-cysignals/template | 22 ++++++++++++++---- 2 files changed, 40 insertions(+), 5 deletions(-) create mode 100644 srcpkgs/python3-cysignals/patches/fix-cross.patch diff --git a/srcpkgs/python3-cysignals/patches/fix-cross.patch b/srcpkgs/python3-cysignals/patches/fix-cross.patch new file mode 100644 index 0000000000000..8d08c516e0eb1 --- /dev/null +++ b/srcpkgs/python3-cysignals/patches/fix-cross.patch @@ -0,0 +1,23 @@ +diff --git a/configure.ac b/configure.ac +index d0624ec..f5a6786 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -48,7 +48,7 @@ fi + AC_MSG_CHECKING([for emms instruction]) + # We add the "leal" instruction to reduce false positives in case some + # non-x86 architecture also has an "emms" instruction. +-AC_RUN_IFELSE([AC_LANG_PROGRAM([[]], [[asm("leal (%eax), %eax; emms");]])], ++AC_COMPILE_IFELSE([AC_LANG_PROGRAM([[]], [[asm("leal (%eax), %eax; emms");]])], + dnl YES + [AC_MSG_RESULT([yes])] + AC_DEFINE(HAVE_EMMS, 1, [Define to 1 if your processor understands the "emms" instruction.]) +@@ -84,6 +84,9 @@ AC_RUN_IFELSE([AC_LANG_PROGRAM( + , + dnl NO + [AC_MSG_RESULT([no])] ++ , ++ [AC_MSG_RESULT([cross, assume yes])] ++ sigsetjmp=yes + ) + + AC_MSG_CHECKING([for GNU libc]) diff --git a/srcpkgs/python3-cysignals/template b/srcpkgs/python3-cysignals/template index da80babe1fcb1..492ae7ba59d22 100644 --- a/srcpkgs/python3-cysignals/template +++ b/srcpkgs/python3-cysignals/template @@ -1,18 +1,30 @@ # Template file for 'python3-cysignals' pkgname=python3-cysignals -version=1.11.3 +version=1.11.4 revision=1 -build_style=python3-module -hostmakedepends="python3-setuptools python3-Cython autoconf" +build_style=python3-pep517 +hostmakedepends="python3-setuptools python3-wheel python3-Cython" makedepends="python3-devel pari-devel" depends="python3" short_desc="Interrupt and signal handling for Cython" maintainer="Gonzalo Tornaría " license="LGPL-3.0-or-later" homepage="https://github.com/sagemath/cysignals" +changelog="https://github.com/sagemath/cysignals/releases" distfiles="${PYPI_SITE}/c/cysignals/cysignals-${version}.tar.gz" -checksum=c2c01f666e5904948952a2250548d8c36ccedd640383791feacf26ea2b958365 -nocross=yes # runs binaries built for target +checksum=0f1e321e55a07f901c86a36a1e4497f6ff9dfe700681d0130a38c36e4eb238c3 + +# run autoconf after patching configure.ac +hostmakedepends+=" autoconf" +post_patch() { + autoconf +} + +do_configure() { + # set up configure_args with common settings as in build-style=gnu-configure + build_style=gnu-configure source /void-packages/common/environment/configure/gnu-configure-args.sh + ./configure ${configure_args} +} do_check() { make check From 6ab8bd2c523868c3b1a0810d9baf74078c5918b1 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Mon, 16 Oct 2023 16:47:38 -0300 Subject: [PATCH 2/5] python3-cypari2: update to 2.1.4, fix cross-build. --- .../patches/cython3-legacy.patch | 32 --- .../python3-cypari2/patches/python312.patch | 214 ------------------ srcpkgs/python3-cypari2/template | 14 +- 3 files changed, 8 insertions(+), 252 deletions(-) delete mode 100644 srcpkgs/python3-cypari2/patches/cython3-legacy.patch delete mode 100644 srcpkgs/python3-cypari2/patches/python312.patch diff --git a/srcpkgs/python3-cypari2/patches/cython3-legacy.patch b/srcpkgs/python3-cypari2/patches/cython3-legacy.patch deleted file mode 100644 index 41392fe80d736..0000000000000 --- a/srcpkgs/python3-cypari2/patches/cython3-legacy.patch +++ /dev/null @@ -1,32 +0,0 @@ -commit 8ef356a4eb936c37f55a5c501f3a955e6740c0c5 -Author: Gonzalo Tornaría -Date: Wed Jul 19 19:45:23 2023 -0300 - - cython3 support using legacy directives - -diff --git a/cypari2/gen.pyx b/cypari2/gen.pyx -index 247b1ad..75050a0 100644 ---- a/cypari2/gen.pyx -+++ b/cypari2/gen.pyx -@@ -329,7 +329,7 @@ cdef class Gen(Gen_base): - >>> pari = Pari() - >>> L = pari("vector(10,i,i^2)") - >>> L.__iter__() -- -+ <...generator object at ...> - >>> [x for x in L] - [1, 4, 9, 16, 25, 36, 49, 64, 81, 100] - >>> list(L) -diff --git a/setup.py b/setup.py -index 2188711..455337f 100755 ---- a/setup.py -+++ b/setup.py -@@ -36,6 +36,8 @@ class build_ext(_build_ext): - "binding": True, - "cdivision": True, - "language_level": 2, -+ "legacy_implicit_noexcept": True, -+ "c_api_binop_methods": True, - } - - _build_ext.finalize_options(self) diff --git a/srcpkgs/python3-cypari2/patches/python312.patch b/srcpkgs/python3-cypari2/patches/python312.patch deleted file mode 100644 index 255cfb9f1fb75..0000000000000 --- a/srcpkgs/python3-cypari2/patches/python312.patch +++ /dev/null @@ -1,214 +0,0 @@ -From 0c7e9a1749d67ef1b880283112e968f644e24341 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= -Date: Mon, 2 Oct 2023 07:47:14 -0300 -Subject: [PATCH] Support python 3.12 - ---- - cypari2/Py_SET_SIZE.h | 8 ---- - cypari2/convert.pyx | 27 ++++-------- - cypari2/pycore_long.h | 98 +++++++++++++++++++++++++++++++++++++++++ - cypari2/pycore_long.pxd | 9 ++++ - 4 files changed, 116 insertions(+), 26 deletions(-) - delete mode 100644 cypari2/Py_SET_SIZE.h - create mode 100644 cypari2/pycore_long.h - create mode 100644 cypari2/pycore_long.pxd - -diff --git a/cypari2/Py_SET_SIZE.h b/cypari2/Py_SET_SIZE.h -deleted file mode 100644 -index 5f18ab0..0000000 ---- a/cypari2/Py_SET_SIZE.h -+++ /dev/null -@@ -1,8 +0,0 @@ --#include "Python.h" -- --#if (PY_MAJOR_VERSION == 3) && (PY_MINOR_VERSION < 9) --// The function Py_SET_SIZE is defined starting with python 3.9. --void Py_SET_SIZE(PyVarObject *o, Py_ssize_t size){ -- Py_SIZE(o) = size; --} --#endif -diff --git a/cypari2/convert.pyx b/cypari2/convert.pyx -index 7c2ed24..8d39c3c 100644 ---- a/cypari2/convert.pyx -+++ b/cypari2/convert.pyx -@@ -54,14 +54,8 @@ from libc.math cimport INFINITY - from .paridecl cimport * - from .stack cimport new_gen, reset_avma - from .string_utils cimport to_string, to_bytes -- --cdef extern from *: -- ctypedef struct PyLongObject: -- digit* ob_digit -- --cdef extern from "Py_SET_SIZE.h": -- void Py_SET_SIZE(py_long o, Py_ssize_t size) -- -+from .pycore_long cimport (ob_digit, _PyLong_IsZero, _PyLong_IsNegative, -+ _PyLong_IsPositive, _PyLong_DigitCount, _PyLong_SetSignAndDigitCount) - - ######################################################################## - # Conversion PARI -> Python -@@ -424,7 +418,7 @@ cdef PyLong_FromINT(GEN g): - cdef Py_ssize_t sizedigits_final = 0 - - cdef py_long x = _PyLong_New(sizedigits) -- cdef digit* D = x.ob_digit -+ cdef digit* D = ob_digit(x) - - cdef digit d - cdef ulong w -@@ -452,10 +446,7 @@ cdef PyLong_FromINT(GEN g): - sizedigits_final = i+1 - - # Set correct size -- if signe(g) > 0: -- Py_SET_SIZE(x, sizedigits_final) -- else: -- Py_SET_SIZE(x, -sizedigits_final) -+ _PyLong_SetSignAndDigitCount(x, signe(g), sizedigits_final) - - return x - -@@ -465,18 +456,18 @@ cdef PyLong_FromINT(GEN g): - ######################################################################## - - cdef GEN PyLong_AS_GEN(py_long x): -- cdef const digit* D = x.ob_digit -+ cdef const digit* D = ob_digit(x) - - # Size of the input - cdef size_t sizedigits - cdef long sgn -- if Py_SIZE(x) == 0: -+ if _PyLong_IsZero(x): - return gen_0 -- elif Py_SIZE(x) > 0: -- sizedigits = Py_SIZE(x) -+ elif _PyLong_IsPositive(x): -+ sizedigits = _PyLong_DigitCount(x) - sgn = evalsigne(1) - else: -- sizedigits = -Py_SIZE(x) -+ sizedigits = _PyLong_DigitCount(x) - sgn = evalsigne(-1) - - # Size of the output, in bits and in words -diff --git a/cypari2/pycore_long.h b/cypari2/pycore_long.h -new file mode 100644 -index 0000000..ff1a73d ---- /dev/null -+++ b/cypari2/pycore_long.h -@@ -0,0 +1,98 @@ -+#include "Python.h" -+#include -+ -+#if PY_VERSION_HEX >= 0x030C00A5 -+#define ob_digit(o) (((PyLongObject*)o)->long_value.ob_digit) -+#else -+#define ob_digit(o) (((PyLongObject*)o)->ob_digit) -+#endif -+ -+#if PY_VERSION_HEX >= 0x030C00A7 -+// taken from cpython:Include/internal/pycore_long.h @ 3.12 -+ -+/* Long value tag bits: -+ * 0-1: Sign bits value = (1-sign), ie. negative=2, positive=0, zero=1. -+ * 2: Reserved for immortality bit -+ * 3+ Unsigned digit count -+ */ -+#define SIGN_MASK 3 -+#define SIGN_ZERO 1 -+#define SIGN_NEGATIVE 2 -+#define NON_SIZE_BITS 3 -+ -+static inline bool -+_PyLong_IsZero(const PyLongObject *op) -+{ -+ return (op->long_value.lv_tag & SIGN_MASK) == SIGN_ZERO; -+} -+ -+static inline bool -+_PyLong_IsNegative(const PyLongObject *op) -+{ -+ return (op->long_value.lv_tag & SIGN_MASK) == SIGN_NEGATIVE; -+} -+ -+static inline bool -+_PyLong_IsPositive(const PyLongObject *op) -+{ -+ return (op->long_value.lv_tag & SIGN_MASK) == 0; -+} -+ -+static inline Py_ssize_t -+_PyLong_DigitCount(const PyLongObject *op) -+{ -+ assert(PyLong_Check(op)); -+ return op->long_value.lv_tag >> NON_SIZE_BITS; -+} -+ -+#define TAG_FROM_SIGN_AND_SIZE(sign, size) ((1 - (sign)) | ((size) << NON_SIZE_BITS)) -+ -+static inline void -+_PyLong_SetSignAndDigitCount(PyLongObject *op, int sign, Py_ssize_t size) -+{ -+ assert(size >= 0); -+ assert(-1 <= sign && sign <= 1); -+ assert(sign != 0 || size == 0); -+ op->long_value.lv_tag = TAG_FROM_SIGN_AND_SIZE(sign, (size_t)size); -+} -+ -+#else -+// fallback for < 3.12 -+ -+static inline bool -+_PyLong_IsZero(const PyLongObject *op) -+{ -+ return Py_SIZE(op) == 0; -+} -+ -+static inline bool -+_PyLong_IsNegative(const PyLongObject *op) -+{ -+ return Py_SIZE(op) < 0; -+} -+ -+static inline bool -+_PyLong_IsPositive(const PyLongObject *op) -+{ -+ return Py_SIZE(op) > 0; -+} -+ -+static inline Py_ssize_t -+_PyLong_DigitCount(const PyLongObject *op) -+{ -+ Py_ssize_t size = Py_SIZE(op); -+ return size < 0 ? -size : size; -+} -+ -+static inline void -+_PyLong_SetSignAndDigitCount(PyLongObject *op, int sign, Py_ssize_t size) -+{ -+#if (PY_MAJOR_VERSION == 3) && (PY_MINOR_VERSION < 9) -+// The function Py_SET_SIZE is defined starting with python 3.9. -+ Py_SIZE(o) = size; -+#else -+ Py_SET_SIZE(op, sign < 0 ? -size : size); -+#endif -+} -+ -+#endif -diff --git a/cypari2/pycore_long.pxd b/cypari2/pycore_long.pxd -new file mode 100644 -index 0000000..41de637 ---- /dev/null -+++ b/cypari2/pycore_long.pxd -@@ -0,0 +1,9 @@ -+from cpython.longintrepr cimport py_long, digit -+ -+cdef extern from "pycore_long.h": -+ digit* ob_digit(py_long o) -+ bint _PyLong_IsZero(py_long o) -+ bint _PyLong_IsNegative(py_long o) -+ bint _PyLong_IsPositive(py_long o) -+ Py_ssize_t _PyLong_DigitCount(py_long o) -+ void _PyLong_SetSignAndDigitCount(py_long o, int sign, Py_ssize_t size) diff --git a/srcpkgs/python3-cypari2/template b/srcpkgs/python3-cypari2/template index c93052ba52bce..7e359e790f57e 100644 --- a/srcpkgs/python3-cypari2/template +++ b/srcpkgs/python3-cypari2/template @@ -1,18 +1,20 @@ # Template file for 'python3-cypari2' pkgname=python3-cypari2 -version=2.1.3 -revision=5 -build_style=python3-module -hostmakedepends="python3-setuptools python3-Cython pari perl" -makedepends="python3-devel python3-cysignals pari-devel gmp-devel" +version=2.1.4 +revision=1 +build_style=python3-pep517 +hostmakedepends="python3-setuptools python3-wheel python3-Cython + python3-cysignals pari perl" +makedepends="python3-devel pari-devel gmp-devel" depends="python3-cysignals" checkdepends="${depends} python3-pytest" short_desc="Python interface to the number theory library PARI/GP" maintainer="Gonzalo Tornaría " license="GPL-2.0-or-later" homepage="https://github.com/sagemath/cypari2" +changelog="https://github.com/sagemath/cypari2/releases" distfiles="https://github.com/sagemath/cypari2/archive/refs/tags/${version}.tar.gz" -checksum=6f6f6ca2b2c2dbef4444727e8fb8652b090cfac4297ba959e94b3a91bbd86548 +checksum=95daf1a74275a35730bbca75144776c1bb0594dd90af82ebf7bf96bb1a52c3d8 do_check() { # Please do not disable this custom check; From 6fa2f52941e77720d403f95088d8196a2d8d2437 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Mon, 16 Oct 2023 17:36:36 -0300 Subject: [PATCH 3/5] python3-fpylll: fix check and cross-build. --- srcpkgs/python3-fpylll/patches/fix-test.patch | 22 +++++++++++++++++++ srcpkgs/python3-fpylll/template | 13 +++++------ 2 files changed, 27 insertions(+), 8 deletions(-) create mode 100644 srcpkgs/python3-fpylll/patches/fix-test.patch diff --git a/srcpkgs/python3-fpylll/patches/fix-test.patch b/srcpkgs/python3-fpylll/patches/fix-test.patch new file mode 100644 index 0000000000000..bf7990cf7b234 --- /dev/null +++ b/srcpkgs/python3-fpylll/patches/fix-test.patch @@ -0,0 +1,22 @@ +From e95aeb62cd63b53f3eaca02505c81836b6a12146 Mon Sep 17 00:00:00 2001 +From: "Martin R. Albrecht" +Date: Mon, 16 Oct 2023 11:02:42 +0100 +Subject: [PATCH] Python 3.12 has ideas about printing + +--- + src/fpylll/fplll/bkz_param.pyx | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/src/fpylll/fplll/bkz_param.pyx b/src/fpylll/fplll/bkz_param.pyx +index c7205dd1..da3c1827 100644 +--- a/src/fpylll/fplll/bkz_param.pyx ++++ b/src/fpylll/fplll/bkz_param.pyx +@@ -96,7 +96,7 @@ cdef class Strategy: + + >>> from fpylll import load_strategies_json, BKZ + >>> print(load_strategies_json(BKZ.DEFAULT_STRATEGY)[50].dict()) # doctest: +ELLIPSIS +- OrderedDict([('block_size', 50), ('preprocessing_block_sizes', (26,)), ('pruning_parameters', ...)]) ++ OrderedDict... + >>> print(load_strategies_json(BKZ.DEFAULT_STRATEGY)[50]) + Strategy< 50, (26), 0.52-0.55, {}> + diff --git a/srcpkgs/python3-fpylll/template b/srcpkgs/python3-fpylll/template index adff12e05ae3a..c5e51642c9511 100644 --- a/srcpkgs/python3-fpylll/template +++ b/srcpkgs/python3-fpylll/template @@ -2,10 +2,10 @@ pkgname=python3-fpylll version=0.5.9 revision=3 -build_style=python3-module -hostmakedepends="python3-Cython" -makedepends="python3-cysignals python3-devel gmp-devel mpfr-devel fplll-devel - pari-devel" +build_style=python3-pep517 +hostmakedepends="python3-setuptools python3-wheel python3-Cython + python3-cysignals" +makedepends="python3-devel gmp-devel mpfr-devel fplll-devel pari-devel" depends="python3" checkdepends="python3-pytest python3-numpy" short_desc="Python wrapper to fplll (floating point lattice algorithms)" @@ -15,12 +15,9 @@ homepage="https://github.com/fplll/fpylll" changelog="https://github.com/fplll/fpylll/releases" distfiles="${PYPI_SITE}/f/fpylll/fpylll-${version}.tar.gz" checksum=be16d40fd94ddea771ccef44434732dfbf9a88cf15cd5f9020ec7a8197f16358 +make_check_pre="env PY_IGNORE_IMPORTMISMATCH=1" case $XBPS_TARGET_MACHINE in # skip a test with numerical noise on 32 bit i686*) make_check_args="-k not(averaged_simulate_prob)" ;; esac - -pre_check() { - export PY_IGNORE_IMPORTMISMATCH=1 -} From 79c9de0fed611d27dd346d5b3d5754e84d4b8436 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Mon, 16 Oct 2023 18:11:02 -0300 Subject: [PATCH 4/5] python3-primecountpy: fix cross-build. --- srcpkgs/python3-primecountpy/template | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/srcpkgs/python3-primecountpy/template b/srcpkgs/python3-primecountpy/template index 886e5d67c512a..eb3587dbb29c8 100644 --- a/srcpkgs/python3-primecountpy/template +++ b/srcpkgs/python3-primecountpy/template @@ -2,9 +2,10 @@ pkgname=python3-primecountpy version=0.1.0 revision=4 -build_style=python3-module -hostmakedepends="python3-setuptools python3-Cython" -makedepends="python3-cysignals python3-devel primecount-devel pari-devel" +build_style=python3-pep517 +hostmakedepends="python3-setuptools python3-wheel python3-Cython + python3-cysignals" +makedepends="python3-devel primecount-devel pari-devel" depends="python3" short_desc="Python interface to the C++ library primecount" maintainer="Gonzalo Tornaría " From 62ebb553292f40608033b63efede2b14fa99fecb Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= Date: Mon, 16 Oct 2023 18:13:34 -0300 Subject: [PATCH 5/5] python3-pplpy: update to 0.8.9, fix cross-build. --- .../patches/dont-depend-on-sphinx.patch | 7 +++++++ srcpkgs/python3-pplpy/template | 19 ++++++++++--------- 2 files changed, 17 insertions(+), 9 deletions(-) create mode 100644 srcpkgs/python3-pplpy/patches/dont-depend-on-sphinx.patch diff --git a/srcpkgs/python3-pplpy/patches/dont-depend-on-sphinx.patch b/srcpkgs/python3-pplpy/patches/dont-depend-on-sphinx.patch new file mode 100644 index 0000000000000..65c5cf40d73bd --- /dev/null +++ b/srcpkgs/python3-pplpy/patches/dont-depend-on-sphinx.patch @@ -0,0 +1,7 @@ +--- a/pyproject.toml ++++ b/pyproject.toml +@@ -1,3 +1,3 @@ + [build-system] +-requires = ["setuptools", "wheel", "Cython", "cysignals", "sphinx", "gmpy2>=2.1.0b1"] ++requires = ["setuptools", "wheel", "Cython", "cysignals", "gmpy2>=2.1.0b1"] + build-backend = "setuptools.build_meta" diff --git a/srcpkgs/python3-pplpy/template b/srcpkgs/python3-pplpy/template index fe6b08dba40f2..4a9c987b2a859 100644 --- a/srcpkgs/python3-pplpy/template +++ b/srcpkgs/python3-pplpy/template @@ -1,19 +1,20 @@ # Template file for 'python3-pplpy' pkgname=python3-pplpy -version=0.8.7 -revision=4 -build_style=python3-module -hostmakedepends="python3-setuptools python3-Cython0.29" -makedepends="python3-cysignals python3-gmpy2 python3-devel gmp-devel - gmpxx-devel ppl-devel mpfr-devel libmpc-devel pari-devel" +version=0.8.9 +revision=1 +build_style=python3-pep517 +hostmakedepends="python3-setuptools python3-wheel python3-Cython0.29 + python3-cysignals python3-gmpy2" +makedepends="python3-devel gmp-devel gmpxx-devel ppl-devel mpfr-devel + libmpc-devel pari-devel" depends="python3" short_desc="Python wrapper to the C++ Parma Polyhedra Library (PPL)" maintainer="Gonzalo Tornaría " license="GPL-3.0-or-later" -homepage="https://gitlab.com/videlec/pplpy" -changelog="https://gitlab.com/videlec/pplpy/-/raw/master/CHANGES.txt" +homepage="https://github.com/sagemath/pplpy" +changelog="https://raw.githubusercontent.com/sagemath/pplpy/master/CHANGES.txt" distfiles="${PYPI_SITE}/p/pplpy/pplpy-${version}.tar.gz" -checksum=500bd0f4ae1a76956fae7fcba77854f5ec3e64fce76803664983763c3f2bd8bd +checksum=db7a3b571d6ef053f75137975e947c3a1c1e45a30bab90eaf215b4e5cc15797e do_check() { PYTHONPATH=$(cd build/lib* && pwd) python3 setup.py test