From mboxrd@z Thu Jan 1 00:00:00 1970 X-Spam-Checker-Version: SpamAssassin 3.4.4 (2020-01-24) on inbox.vuxu.org X-Spam-Level: X-Spam-Status: No, score=-3.4 required=5.0 tests=DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,FREEMAIL_FROM,MAILING_LIST_MULTI,RCVD_IN_DNSWL_MED, UNPARSEABLE_RELAY autolearn=ham autolearn_force=no version=3.4.4 Received: (qmail 26384 invoked from network); 3 Aug 2022 00:13:18 -0000 Received: from zero.zsh.org (2a02:898:31:0:48:4558:7a:7368) by inbox.vuxu.org with ESMTPUTF8; 3 Aug 2022 00:13:18 -0000 ARC-Seal: i=1; cv=none; a=rsa-sha256; d=zsh.org; s=rsa-20210803; t=1659485598; b=kVvJhil1ADbnZzHz2ZHDs5vZ+0F6GQetr94+aU13fcNzG1OAIDgShYCp/Gn52+UbO6GIcb4RaW EHXQ2U2gZOilxCMab2QYssp9oTYlggnuC/AgIU4MUrgHVG11gY1YGWAB3f0PTqQUHUGk1lHo6g /mOLXrPNbOP7Sqs6ERKkSCDnf2JM3Van34Ukh3PRO1CDxFEs4EL8vOqDad3o3HLlws0ui9Ex3K Apa7zinFV/K4cm1j8akyk5aRd0hr87xTHfT5z9xh4ksQw16TURbRhNvWXqTDCh46cbzyMwVC05 Gin8v753YK9WHdbm77Jy/nbBw/iVZWoxr0Na5gAy5imqRQ==; ARC-Authentication-Results: i=1; zsh.org; iprev=pass (mail-io1-f48.google.com) smtp.remote-ip=209.85.166.48; dkim=pass header.d=gmail.com header.s=20210112 header.a=rsa-sha256; dmarc=pass header.from=gmail.com; arc=none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed; d=zsh.org; s=rsa-20210803; t=1659485598; bh=pDofEsIxrjqoA0oitP8JKhWVKNTTKmwVT8rUgoFhca4=; h=List-Archive:List-Owner:List-Post:List-Unsubscribe:List-Subscribe:List-Help: List-Id:Sender:To:Date:Message-ID:Subject:MIME-Version: Content-Transfer-Encoding:Content-Type:From:DKIM-Signature:DKIM-Signature; b=Mqs1L46JV6PwEs3VeuhhG/TjhOiar9O8S5IAyHxevRAbowHeT3qzJIrm7G/eQKrLNRrTE+aZTI x2pD6GqMsXLtkgfTlow7VERA30YvS0TsJpL7ZjhG3VB7z6d8dJIf8qxGzfTQ3n9U03k2rEDkIB r2p0EuF7STzgAXF90laoCBg/IyP0Kix7n3Ma4Jk+Yd9ogPBM7tNuviIEV38+OSl41lRVGgi9Wu r692M4+Gdm0Tso4NajbB6CATWJjbkxCbUEqAcOMbcDdBGZmYKZYhhLPQZE1eokQ+9i1IsL3qkI QXOOEsaQ/Pq5UHFC/B9dXUfDZk2eTlLDwJtL9a5RJTDTCQ==; DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=zsh.org; s=rsa-20210803; h=List-Archive:List-Owner:List-Post:List-Unsubscribe: List-Subscribe:List-Help:List-Id:Sender:To:Date:Message-Id:Subject: Mime-Version:Content-Transfer-Encoding:Content-Type:From:Reply-To:Cc: Content-ID:Content-Description:Resent-Date:Resent-From:Resent-Sender: Resent-To:Resent-Cc:Resent-Message-ID:In-Reply-To:References; bh=E8OZwHhGIqgNpj+BsTHFneLbm3HSvEJraygz4o/7Cig=; b=SEv+ivlpnTEDFuf584ozjqAH8h cqnog4WWlWuwCHcSt89sFRGN/gVvWALiPpYPmJtWbdyu9i05oy0qohWjeMlg2j8tPNu1dEoq1kwbZ 25Rj+XXNVqjTh+m134sEAoUGaeU84nLYFWhLIiN2iCnBhhl+zwg9HQny4PI721LWZn7c1Yj4IXH2e O/qOK3Fx0FGtmTIjWEKVdJuetuCgiwlfigfN9S0+G18VSKHZC34AIraXaDSkkHDe/B5I+CTbUE35O JDQRDnEHpW+HZWsen8cJndNlDxDvwgpm26q7wDPn3nKz2UQzNylwwWC4YwXhkfV/Crlxl4ydMdhvy UY02cr4g==; Received: from authenticated user by zero.zsh.org with local id 1oJ20j-0004ns-8w; Wed, 03 Aug 2022 00:13:17 +0000 Authentication-Results: zsh.org; iprev=pass (mail-io1-f48.google.com) smtp.remote-ip=209.85.166.48; dkim=pass header.d=gmail.com header.s=20210112 header.a=rsa-sha256; dmarc=pass header.from=gmail.com; arc=none Received: from mail-io1-f48.google.com ([209.85.166.48]:35591) by zero.zsh.org with esmtps (TLS1.3:TLS_AES_128_GCM_SHA256:128) id 1oJ204-00047a-VT; Wed, 03 Aug 2022 00:12:37 +0000 Received: by mail-io1-f48.google.com with SMTP id p81so11894759iod.2 for ; Tue, 02 Aug 2022 17:12:36 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20210112; h=from:content-transfer-encoding:mime-version:subject:message-id:date :to; bh=E8OZwHhGIqgNpj+BsTHFneLbm3HSvEJraygz4o/7Cig=; b=WU0Ji0DwKVZNJ+KsnkxMmuMVgh2AdZ477CkE96tev3N/ozdsvMGDHzEGZuh/pPoA+d e2/drEEadlRvZvrCXHUFaXqXEYNjFHexRzWApBHV8z/PPwGFOYQ6kgES0ymDbefPOXGw jddbRR8Y7mliCgYl6tFm2we7Yk70THy/kdHKiFIR0zZ5TIbu4FoOlHWJziXdz+Gt0VuH 2k5tQZEmtdk8mjZ5XM/Ma/ogToD129Vn67lk0mh0Eocy6FAZcrLN5Jzyuw/U6im1t5Zg yxnZXTvuyZeQO7FvH6QcoAawKswpExwAc6B83tKXH3yQMqP+fwzAMRFQDdT4NavHNt4g Cfcw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20210112; h=x-gm-message-state:from:content-transfer-encoding:mime-version :subject:message-id:date:to; bh=E8OZwHhGIqgNpj+BsTHFneLbm3HSvEJraygz4o/7Cig=; b=vNsex8r/Aj/OO90xtvexUPLfReevrcXRZmbamWjY5EL6zHUJ4bOV1vhUJO0uGol/6L YuPTkp5g9f7lB2YWbrwbORhZuU1Q1dMTGyKJwnBSsq0jfG8AsZrlHNP6RpgIZB+4/cze DZL6y2aProSj1ePl5BKubUHyQMbUERthZjsOxYPZYlQa/0jYutrBw5nSoDMxxNtc96iJ HkZ/LGKsPlN1wENamOc26f4T1ooN5sLryXwXjgkgd2TPuy++1HM+M2KkJVAcO3lIXYG1 +SLosauU+Ud82b0aRKwZiXCcXLGL3n+9c9KCy6C8tUhMwKb/tpO+I63bItlyIgBQPje7 FJXQ== X-Gm-Message-State: ACgBeo0pZqsOuDkOHzUu+6tP0bLFdN/Ydodu1FRxl7tz5Th0MFnmW0bA l2QBF4/Gd7BDT53JgSjUuoR5woFm4LhwGA== X-Google-Smtp-Source: AA6agR4z0ef6jaGQJYgew0lNeaFKQEdembNVNDgs/gBlqy8PNe+kUviOS5NTpgqpYFlxTQTM78tHyA== X-Received: by 2002:a05:6638:1a90:b0:342:80ea:943 with SMTP id ce16-20020a0566381a9000b0034280ea0943mr2507395jab.312.1659485555255; Tue, 02 Aug 2022 17:12:35 -0700 (PDT) Received: from smtpclient.apple (2603-900a-1402-f33b-f1fb-2837-4af8-f55a.inf6.spectrum.com. [2603:900a:1402:f33b:f1fb:2837:4af8:f55a]) by smtp.gmail.com with ESMTPSA id u18-20020a92d1d2000000b002dc0c1b8edbsm6316415ilg.83.2022.08.02.17.12.34 for (version=TLS1_2 cipher=ECDHE-ECDSA-AES128-GCM-SHA256 bits=128/128); Tue, 02 Aug 2022 17:12:34 -0700 (PDT) From: Aki Hoji Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Mime-Version: 1.0 (Mac OS X Mail 16.0 \(3696.120.41.1.1\)) Subject: Sed error Message-Id: <39BA2F80-DBD0-4626-A57D-58109078CFD5@gmail.com> Date: Tue, 2 Aug 2022 20:12:33 -0400 To: zsh-users@zsh.org X-Mailer: Apple Mail (2.3696.120.41.1.1) X-Seq: 27923 Archived-At: X-Loop: zsh-users@zsh.org Errors-To: zsh-users-owner@zsh.org Precedence: list Precedence: bulk Sender: zsh-users-request@zsh.org X-no-archive: yes List-Id: List-Help: List-Subscribe: List-Unsubscribe: List-Post: List-Owner: List-Archive: HI,=20 I get the error message (sed: -e expression #1, char 2: invalid usage of = line address 0) when I run a following; parallel -a temp3.fq -k --block 50M --pipe-part 'sed -e = "$!N;/\nXQ@A00165/!P;D"' > temp4.fq When I run this one liner in bash, it works just fine but under zsh. = Apprently, zsh does not like =E2=80=9C!=E2=80=9D. Isn=E2=80=99t = =E2=80=9C!=E2=80=9D in the script not compatible with zsh and is there = any work around for this ?=20 I am using my institution=E2=80=99s cluster; 3.10.0-1160.71.1.el7.x86_64 x86_64 x86_64 x86_64 GNU/Linu Thanks.=20=