So basically my problem is described here: https://github.com/robbyrussell/oh-my-zsh/issues/6712 tl;dr: I had oh-my-zsh install itself, the zsh is the default shell, the $PATH is ok, but for some reason zsh doesn't find it. sudo usermod raitaro -s $(which zsh) $PATH zsh: no such file or directory So in the terminal I can run any ~/bin script, but outside of the terminal none of those work which it's extremely annoying. Yeah, also on another note, I am using the hack nerd font for the terminal, but for some reason Konsole and Yakuake just don't quite display the folder icon right, it is a bit chopped. I would assume is a terminal issue, not that huge of a deal, just mentioning in case maybe you've seen something similar.