* [ISSUE] `jupyter lab` not working in virtual enviroment
@ 2023-11-09 14:36 Eloitor
2023-11-09 15:21 ` Eloitor
` (4 more replies)
0 siblings, 5 replies; 6+ messages in thread
From: Eloitor @ 2023-11-09 14:36 UTC (permalink / raw)
To: ml
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New issue by Eloitor on void-packages repository
https://github.com/void-linux/void-packages/issues/47135
Description:
### Is this a new report?
Yes
### System Info
Void 6.5.9_1 x86_64 GenuineIntel uptodate rFFFFFFFFFFFFFFFFFFFFFFFFFFF
### Package(s) Affected
sagemath-10.1_4 jupyterlab-4.0.7_1
### Does a report exist for this bug with the project's home (upstream) and/or another distro?
_No response_
### Expected behaviour
I can use sagemath in a virtual environment in `jupyter lab`.
### Actual behaviour
I can use sagemath in a virtualenvironment in the repl, but not with `jupyer lab`.
### Steps to reproduce
1. Install `sagemath` and `jupyterlab`
2. Create a python virtual environment: `python3 -m venv /path/to/venv`
3. Activate the virtual environment: `. /path/to/venv/bin/activate`
4. Run `sage`, output is
```
$ sage
┌────────────────────────────────────────────────────────────────────┐
│ SageMath version 10.1, Release Date: 2023-08-20 │
│ Using Python 3.12.0. Type "help()" for help. │
└────────────────────────────────────────────────────────────────────┘
/usr/lib/python3.12/site-packages/IPython/core/interactiveshell.py:913: UserWarning: Attempting to work in a virtualenv. If you encounter problems, please install IPython inside the virtualenv.
warn(
sage:
```
After this, sage works as expected.
5. Quit sage with `Control + D`.
6. run `jupyter lab`, and create a new sagemath notebook.
The notebook does not work (computations get stuck forever).
```
/path/to/venv/bin/python3: Error while finding module specification for 'sage.repl.ipython_kernel' (ModuleNotFoundError: No module named 'sage')
```
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: `jupyter lab` not working in virtual enviroment
2023-11-09 14:36 [ISSUE] `jupyter lab` not working in virtual enviroment Eloitor
@ 2023-11-09 15:21 ` Eloitor
2023-11-26 16:29 ` tornaria
` (3 subsequent siblings)
4 siblings, 0 replies; 6+ messages in thread
From: Eloitor @ 2023-11-09 15:21 UTC (permalink / raw)
To: ml
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New comment by Eloitor on void-packages repository
https://github.com/void-linux/void-packages/issues/47135#issuecomment-1804034798
Comment:
Maybe this is easier to debug:
```
$ . /path/to/venv/bin/activate
$ jupyter console --kernel=sagemath
/path/to/venv/bin/python3: Error while finding module specification for 'sage.repl.ipython_kernel' (ModuleNotFoundError: No module named 'sage.repl')
```
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: `jupyter lab` not working in virtual enviroment
2023-11-09 14:36 [ISSUE] `jupyter lab` not working in virtual enviroment Eloitor
2023-11-09 15:21 ` Eloitor
@ 2023-11-26 16:29 ` tornaria
2023-11-27 8:27 ` Eloitor
` (2 subsequent siblings)
4 siblings, 0 replies; 6+ messages in thread
From: tornaria @ 2023-11-26 16:29 UTC (permalink / raw)
To: ml
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New comment by tornaria on void-packages repository
https://github.com/void-linux/void-packages/issues/47135#issuecomment-1826828577
Comment:
Of course this is expected and how venv works afaik:
```
$ python -m venv bad-venv
$ . bad-venv/bin/activate
(bad-venv) $ python -m sage
.../bad-venv/bin/python: No module named sage
(bad-venv) $
```
What you want can be acomplished with `--system-site-packages`:
```
$ python -m venv --system-site-packages good-venv
$ . good-venv/bin/activate
(good-venv) $ python -m sage
.../good-venv/bin/python: No module named sage.__main__; 'sage' is a package and cannot be directly executed
(good-venv) $ jupyter console --kernel=sagemath
[IPKernelApp] WARNING | debugpy_stream undefined, debugging will not be enabled
Jupyter console 6.6.3
┌────────────────────────────────────────────────────────────────────┐
│ SageMath version 10.2.rc4, Release Date: 2023-11-17 │
│ Using Python 3.12.0. Type "help()" for help. │
└────────────────────────────────────────────────────────────────────┘
┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
┃ Warning: this is a prerelease version, and it may be unstable. ┃
┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛
In [1]:
```
Please check if this works for you. Note that running sage like this is unsupported upstream. They really want you to build the whole kitchen sink.
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: `jupyter lab` not working in virtual enviroment
2023-11-09 14:36 [ISSUE] `jupyter lab` not working in virtual enviroment Eloitor
2023-11-09 15:21 ` Eloitor
2023-11-26 16:29 ` tornaria
@ 2023-11-27 8:27 ` Eloitor
2023-11-28 2:25 ` tornaria
2023-11-28 2:31 ` [ISSUE] [CLOSED] " classabbyamp
4 siblings, 0 replies; 6+ messages in thread
From: Eloitor @ 2023-11-27 8:27 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 205 bytes --]
New comment by Eloitor on void-packages repository
https://github.com/void-linux/void-packages/issues/47135#issuecomment-1827352492
Comment:
This works for me! Thank you. It also works in `jupyter lab`.
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: `jupyter lab` not working in virtual enviroment
2023-11-09 14:36 [ISSUE] `jupyter lab` not working in virtual enviroment Eloitor
` (2 preceding siblings ...)
2023-11-27 8:27 ` Eloitor
@ 2023-11-28 2:25 ` tornaria
2023-11-28 2:31 ` [ISSUE] [CLOSED] " classabbyamp
4 siblings, 0 replies; 6+ messages in thread
From: tornaria @ 2023-11-28 2:25 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 293 bytes --]
New comment by tornaria on void-packages repository
https://github.com/void-linux/void-packages/issues/47135#issuecomment-1828958746
Comment:
> This works for me! Thank you. It also works in `jupyter lab`.
If it's fixed, please close the issue as solved (I don't have permission myself).
^ permalink raw reply [flat|nested] 6+ messages in thread
* Re: [ISSUE] [CLOSED] `jupyter lab` not working in virtual enviroment
2023-11-09 14:36 [ISSUE] `jupyter lab` not working in virtual enviroment Eloitor
` (3 preceding siblings ...)
2023-11-28 2:25 ` tornaria
@ 2023-11-28 2:31 ` classabbyamp
4 siblings, 0 replies; 6+ messages in thread
From: classabbyamp @ 2023-11-28 2:31 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 2027 bytes --]
Closed issue by Eloitor on void-packages repository
https://github.com/void-linux/void-packages/issues/47135
Description:
### Is this a new report?
Yes
### System Info
Void 6.5.9_1 x86_64 GenuineIntel uptodate rFFFFFFFFFFFFFFFFFFFFFFFFFFF
### Package(s) Affected
sagemath-10.1_4 jupyterlab-4.0.7_1
### Does a report exist for this bug with the project's home (upstream) and/or another distro?
_No response_
### Expected behaviour
I can use sagemath in a virtual environment in `jupyter lab`.
### Actual behaviour
I can use sagemath in a virtualenvironment in the repl, but not with `jupyer lab`.
### Steps to reproduce
1. Install `sagemath` and `jupyterlab`
2. Create a python virtual environment: `python3 -m venv /path/to/venv`
3. Activate the virtual environment: `. /path/to/venv/bin/activate`
4. Run `sage`, output is
```
$ sage
┌────────────────────────────────────────────────────────────────────┐
│ SageMath version 10.1, Release Date: 2023-08-20 │
│ Using Python 3.12.0. Type "help()" for help. │
└────────────────────────────────────────────────────────────────────┘
/usr/lib/python3.12/site-packages/IPython/core/interactiveshell.py:913: UserWarning: Attempting to work in a virtualenv. If you encounter problems, please install IPython inside the virtualenv.
warn(
sage:
```
After this, sage works as expected.
5. Quit sage with `Control + D`.
6. run `jupyter lab`, and create a new sagemath notebook.
The notebook does not work (computations get stuck forever).
```
/path/to/venv/bin/python3: Error while finding module specification for 'sage.repl.ipython_kernel' (ModuleNotFoundError: No module named 'sage')
```
^ permalink raw reply [flat|nested] 6+ messages in thread
end of thread, other threads:[~2023-11-28 2:31 UTC | newest]
Thread overview: 6+ messages (download: mbox.gz / follow: Atom feed)
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2023-11-09 14:36 [ISSUE] `jupyter lab` not working in virtual enviroment Eloitor
2023-11-09 15:21 ` Eloitor
2023-11-26 16:29 ` tornaria
2023-11-27 8:27 ` Eloitor
2023-11-28 2:25 ` tornaria
2023-11-28 2:31 ` [ISSUE] [CLOSED] " classabbyamp
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