* Re: [PR PATCH] [Updated] igraph: update to 0.10.7.
2023-09-07 0:57 [PR PATCH] igraph: update to 0.10.7 tornaria
@ 2023-10-17 1:50 ` tornaria
2023-10-20 0:38 ` [PR PATCH] [Merged]: " ahesford
1 sibling, 0 replies; 3+ messages in thread
From: tornaria @ 2023-10-17 1:50 UTC (permalink / raw)
To: ml
[-- Attachment #1: Type: text/plain, Size: 1247 bytes --]
There is an updated pull request by tornaria against master on the void-packages repository
https://github.com/tornaria/void-packages igraph
https://github.com/void-linux/void-packages/pull/45950
igraph: update to 0.10.7.
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#### Testing the changes
- I tested the changes in this PR: **briefly**
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A patch file from https://github.com/void-linux/void-packages/pull/45950.patch is attached
[-- Warning: decoded text below may be mangled, UTF-8 assumed --]
[-- Attachment #2: github-pr-igraph-45950.patch --]
[-- Type: text/x-diff, Size: 19191 bytes --]
From 91920105813a6b78c78f78ad8d2b2abde42386c0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Mon, 16 Oct 2023 22:35:35 -0300
Subject: [PATCH 1/2] arpack-ng: update to 3.9.1, adopt.
---
srcpkgs/arpack-ng/patches/b3fe4ad7.patch | 518 -----------------------
srcpkgs/arpack-ng/template | 8 +-
2 files changed, 4 insertions(+), 522 deletions(-)
delete mode 100644 srcpkgs/arpack-ng/patches/b3fe4ad7.patch
diff --git a/srcpkgs/arpack-ng/patches/b3fe4ad7.patch b/srcpkgs/arpack-ng/patches/b3fe4ad7.patch
deleted file mode 100644
index b3ba91397ec49..0000000000000
--- a/srcpkgs/arpack-ng/patches/b3fe4ad7.patch
+++ /dev/null
@@ -1,518 +0,0 @@
-From b3fe4ad7fa875d192071972ee8523cbc149e8221 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Szabolcs=20Horva=CC=81t?= <szhorvat@gmail.com>
-Date: Sun, 9 Apr 2023 16:36:35 +0200
-Subject: [PATCH] fix: ensure that LAPACK RNG state is propagated
-
- - fixes #401, #410, #411
- - restores 'inits' variable removed in ce2e69a849da1d10dad5d6d3ec4db6120b3ecf50, ensuring that the RNG state is propagated
- - reverts e0d67054f573da351f12a226f7c7cc65a690ef3d to ensure that seed is different on each parallel thread
- - updates seed initialization of parallel pdgetv0/psgetv0 so that they match that of pzgetv0/pcgetv0
----
- PARPACK/SRC/MPI/pcgetv0.f | 48 +++++++++++++++++++++++----------------
- PARPACK/SRC/MPI/pdgetv0.f | 40 ++++++++++++++++++++++++++------
- PARPACK/SRC/MPI/psgetv0.f | 43 ++++++++++++++++++++++++++---------
- PARPACK/SRC/MPI/pzgetv0.f | 48 +++++++++++++++++++++++----------------
- SRC/cgetv0.f | 21 ++++++++++++-----
- SRC/dgetv0.f | 21 ++++++++++++-----
- SRC/sgetv0.f | 21 ++++++++++++-----
- SRC/zgetv0.f | 21 ++++++++++++-----
- 8 files changed, 183 insertions(+), 80 deletions(-)
-
-diff --git a/PARPACK/SRC/MPI/pcgetv0.f b/PARPACK/SRC/MPI/pcgetv0.f
-index 59e3d1658..24fe8a0f1 100644
---- a/PARPACK/SRC/MPI/pcgetv0.f
-+++ b/PARPACK/SRC/MPI/pcgetv0.f
-@@ -176,13 +176,13 @@ subroutine pcgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-+ logical first, inits, orth
- integer idist, iseed(4), iter, msglvl, jj, myid, igen
- Real
- & rnorm0
- Complex
- & cnorm, cnorm2
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- Complex
- & cnorm_buf, buf2(1)
-@@ -203,6 +203,12 @@ subroutine pcgetv0
- & ccdotc
- external ccdotc, pscnorm2, slapy2
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
-@@ -213,26 +219,30 @@ subroutine pcgetv0
- c | random number generator |
- c %-----------------------------------%
- c
-+ if (inits) then
- c
--c %-----------------------------------%
--c | Generate a seed on each processor |
--c | using process id (myid). |
--c | Note: the seed must be between 1 |
--c | and 4095. iseed(4) must be odd. |
--c %-----------------------------------%
-+c %-----------------------------------%
-+c | Generate a seed on each processor |
-+c | using process id (myid). |
-+c | Note: the seed must be between 1 |
-+c | and 4095. iseed(4) must be odd. |
-+c %-----------------------------------%
- c
-- call MPI_COMM_RANK(comm, myid, ierr)
-- igen = 1000 + 2*myid + 1
-- if (igen .gt. 4095) then
-- write(0,*) 'Error in p_getv0: seed exceeds 4095!'
-- end if
-+ call MPI_COMM_RANK(comm, myid, ierr)
-+ igen = 1000 + 2*myid + 1
-+ if (igen .gt. 4095) then
-+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
-+ end if
-+c
-+ iseed(1) = igen/1000
-+ igen = mod(igen,1000)
-+ iseed(2) = igen/100
-+ igen = mod(igen,100)
-+ iseed(3) = igen/10
-+ iseed(4) = mod(igen,10)
- c
-- iseed(1) = igen/1000
-- igen = mod(igen,1000)
-- iseed(2) = igen/100
-- igen = mod(igen,100)
-- iseed(3) = igen/10
-- iseed(4) = 7
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
-diff --git a/PARPACK/SRC/MPI/pdgetv0.f b/PARPACK/SRC/MPI/pdgetv0.f
-index 0f348b820..5a1956997 100644
---- a/PARPACK/SRC/MPI/pdgetv0.f
-+++ b/PARPACK/SRC/MPI/pdgetv0.f
-@@ -177,11 +177,11 @@ subroutine pdgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-- integer idist, iseed(4), iter, msglvl, jj
-+ logical first, inits, orth
-+ integer idist, iseed(4), iter, msglvl, jj, myid, igen
- Double precision
- & rnorm0, buf2(1)
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- Double precision
- & rnorm_buf
-@@ -206,6 +206,12 @@ subroutine pdgetv0
- c
- intrinsic abs, sqrt
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
-@@ -216,10 +222,30 @@ subroutine pdgetv0
- c | random number generator |
- c %-----------------------------------%
- c
-- iseed(1) = 1
-- iseed(2) = 3
-- iseed(3) = 5
-- iseed(4) = 7
-+ if (inits) then
-+c
-+c %-----------------------------------%
-+c | Generate a seed on each processor |
-+c | using process id (myid). |
-+c | Note: the seed must be between 1 |
-+c | and 4095. iseed(4) must be odd. |
-+c %-----------------------------------%
-+c
-+ call MPI_COMM_RANK(comm, myid, ierr)
-+ igen = 1000 + 2*myid + 1
-+ if (igen .gt. 4095) then
-+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
-+ end if
-+c
-+ iseed(1) = igen/1000
-+ igen = mod(igen,1000)
-+ iseed(2) = igen/100
-+ igen = mod(igen,100)
-+ iseed(3) = igen/10
-+ iseed(4) = mod(igen,10)
-+c
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
-diff --git a/PARPACK/SRC/MPI/psgetv0.f b/PARPACK/SRC/MPI/psgetv0.f
-index d79a513b2..078e4fa8c 100644
---- a/PARPACK/SRC/MPI/psgetv0.f
-+++ b/PARPACK/SRC/MPI/psgetv0.f
-@@ -177,11 +177,11 @@ subroutine psgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-- integer idist, iseed(4), iter, msglvl, jj
-+ logical first, inits, orth
-+ integer idist, iseed(4), iter, msglvl, jj, myid, igen
- Real
- & rnorm0
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- Real
- & rnorm_buf
-@@ -206,20 +206,41 @@ subroutine psgetv0
- c
- intrinsic abs, sqrt
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
- c
- c
--c %-----------------------------------%
--c | Initialize the seed of the LAPACK |
--c | random number generator |
--c %-----------------------------------%
-+ if (inits) then
- c
-- iseed(1) = 1
-- iseed(2) = 3
-- iseed(3) = 5
-- iseed(4) = 7
-+c %-----------------------------------%
-+c | Generate a seed on each processor |
-+c | using process id (myid). |
-+c | Note: the seed must be between 1 |
-+c | and 4095. iseed(4) must be odd. |
-+c %-----------------------------------%
-+c
-+ call MPI_COMM_RANK(comm, myid, ierr)
-+ igen = 1000 + 2*myid + 1
-+ if (igen .gt. 4095) then
-+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
-+ end if
-+c
-+ iseed(1) = igen/1000
-+ igen = mod(igen,1000)
-+ iseed(2) = igen/100
-+ igen = mod(igen,100)
-+ iseed(3) = igen/10
-+ iseed(4) = mod(igen,10)
-+c
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
-diff --git a/PARPACK/SRC/MPI/pzgetv0.f b/PARPACK/SRC/MPI/pzgetv0.f
-index 731fb319f..94fb705f3 100644
---- a/PARPACK/SRC/MPI/pzgetv0.f
-+++ b/PARPACK/SRC/MPI/pzgetv0.f
-@@ -176,13 +176,13 @@ subroutine pzgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-+ logical first, inits, orth
- integer idist, iseed(4), iter, msglvl, jj, myid, igen
- Double precision
- & rnorm0
- Complex*16
- & cnorm, cnorm2
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- Complex*16
- & cnorm_buf, buf2(1)
-@@ -203,6 +203,12 @@ subroutine pzgetv0
- & zzdotc
- external zzdotc , pdznorm2 , dlapy2
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
-@@ -213,26 +219,30 @@ subroutine pzgetv0
- c | random number generator |
- c %-----------------------------------%
- c
-+ if (inits) then
- c
--c %-----------------------------------%
--c | Generate a seed on each processor |
--c | using process id (myid). |
--c | Note: the seed must be between 1 |
--c | and 4095. iseed(4) must be odd. |
--c %-----------------------------------%
-+c %-----------------------------------%
-+c | Generate a seed on each processor |
-+c | using process id (myid). |
-+c | Note: the seed must be between 1 |
-+c | and 4095. iseed(4) must be odd. |
-+c %-----------------------------------%
- c
-- call MPI_COMM_RANK(comm, myid, ierr)
-- igen = 1000 + 2*myid + 1
-- if (igen .gt. 4095) then
-- write(0,*) 'Error in p_getv0: seed exceeds 4095!'
-- end if
-+ call MPI_COMM_RANK(comm, myid, ierr)
-+ igen = 1000 + 2*myid + 1
-+ if (igen .gt. 4095) then
-+ write(0,*) 'Error in p_getv0: seed exceeds 4095!'
-+ end if
-+c
-+ iseed(1) = igen/1000
-+ igen = mod(igen,1000)
-+ iseed(2) = igen/100
-+ igen = mod(igen,100)
-+ iseed(3) = igen/10
-+ iseed(4) = mod(igen,10)
- c
-- iseed(1) = igen/1000
-- igen = mod(igen,1000)
-- iseed(2) = igen/100
-- igen = mod(igen,100)
-- iseed(3) = igen/10
-- iseed(4) = 7
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
-diff --git a/SRC/cgetv0.f b/SRC/cgetv0.f
-index b49e66708..c231eadcb 100644
---- a/SRC/cgetv0.f
-+++ b/SRC/cgetv0.f
-@@ -156,13 +156,13 @@ subroutine cgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-+ logical first, inits, orth
- integer idist, iseed(4), iter, msglvl, jj
- Real
- & rnorm0
- Complex
- & cnorm
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- c %----------------------%
- c | External Subroutines |
-@@ -180,6 +180,12 @@ subroutine cgetv0
- & ccdotc
- external ccdotc, scnrm2, slapy2
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
-@@ -190,10 +196,13 @@ subroutine cgetv0
- c | random number generator |
- c %-----------------------------------%
- c
-- iseed(1) = 1
-- iseed(2) = 3
-- iseed(3) = 5
-- iseed(4) = 7
-+ if (inits) then
-+ iseed(1) = 1
-+ iseed(2) = 3
-+ iseed(3) = 5
-+ iseed(4) = 7
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
-diff --git a/SRC/dgetv0.f b/SRC/dgetv0.f
-index 8be4fa26d..1d6dc01bd 100644
---- a/SRC/dgetv0.f
-+++ b/SRC/dgetv0.f
-@@ -157,11 +157,11 @@ subroutine dgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-+ logical first, inits, orth
- integer idist, iseed(4), iter, msglvl, jj
- Double precision
- & rnorm0
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- c %----------------------%
- c | External Subroutines |
-@@ -183,6 +183,12 @@ subroutine dgetv0
- c
- intrinsic abs, sqrt
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
-@@ -193,10 +199,13 @@ subroutine dgetv0
- c | random number generator |
- c %-----------------------------------%
- c
-- iseed(1) = 1
-- iseed(2) = 3
-- iseed(3) = 5
-- iseed(4) = 7
-+ if (inits) then
-+ iseed(1) = 1
-+ iseed(2) = 3
-+ iseed(3) = 5
-+ iseed(4) = 7
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
-diff --git a/SRC/sgetv0.f b/SRC/sgetv0.f
-index 26130a014..d861b2d6d 100644
---- a/SRC/sgetv0.f
-+++ b/SRC/sgetv0.f
-@@ -157,11 +157,11 @@ subroutine sgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-+ logical first, inits, orth
- integer idist, iseed(4), iter, msglvl, jj
- Real
- & rnorm0
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- c %----------------------%
- c | External Subroutines |
-@@ -183,6 +183,12 @@ subroutine sgetv0
- c
- intrinsic abs, sqrt
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
-@@ -193,10 +199,13 @@ subroutine sgetv0
- c | random number generator |
- c %-----------------------------------%
- c
-- iseed(1) = 1
-- iseed(2) = 3
-- iseed(3) = 5
-- iseed(4) = 7
-+ if (inits) then
-+ iseed(1) = 1
-+ iseed(2) = 3
-+ iseed(3) = 5
-+ iseed(4) = 7
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
-diff --git a/SRC/zgetv0.f b/SRC/zgetv0.f
-index cc13c3cfb..1fbd50851 100644
---- a/SRC/zgetv0.f
-+++ b/SRC/zgetv0.f
-@@ -156,13 +156,13 @@ subroutine zgetv0
- c | Local Scalars & Arrays |
- c %------------------------%
- c
-- logical first, orth
-+ logical first, inits, orth
- integer idist, iseed(4), iter, msglvl, jj
- Double precision
- & rnorm0
- Complex*16
- & cnorm
-- save first, iseed, iter, msglvl, orth, rnorm0
-+ save first, iseed, inits, iter, msglvl, orth, rnorm0
- c
- c %----------------------%
- c | External Subroutines |
-@@ -180,6 +180,12 @@ subroutine zgetv0
- & zzdotc
- external zzdotc, dznrm2, dlapy2
- c
-+c %-----------------%
-+c | Data Statements |
-+c %-----------------%
-+c
-+ data inits /.true./
-+c
- c %-----------------------%
- c | Executable Statements |
- c %-----------------------%
-@@ -190,10 +196,13 @@ subroutine zgetv0
- c | random number generator |
- c %-----------------------------------%
- c
-- iseed(1) = 1
-- iseed(2) = 3
-- iseed(3) = 5
-- iseed(4) = 7
-+ if (inits) then
-+ iseed(1) = 1
-+ iseed(2) = 3
-+ iseed(3) = 5
-+ iseed(4) = 7
-+ inits = .false.
-+ end if
- c
- if (ido .eq. 0) then
- c
diff --git a/srcpkgs/arpack-ng/template b/srcpkgs/arpack-ng/template
index 82940ff2bdf9e..2b6e02e7e98df 100644
--- a/srcpkgs/arpack-ng/template
+++ b/srcpkgs/arpack-ng/template
@@ -1,17 +1,17 @@
# Template file for 'arpack-ng'
pkgname=arpack-ng
-version=3.9.0
+version=3.9.1
revision=1
build_style=gnu-configure
hostmakedepends="automake libtool gcc-fortran pkg-config"
makedepends="eigen"
short_desc="Collection of Fortran77 subroutines"
-maintainer="Orphaned <orphan@voidlinux.org>"
+maintainer="Gonzalo Tornaría <tornaria@cmat.edu.uy>"
license="BSD-3-Clause"
homepage="https://github.com/opencollab/arpack-ng"
changelog="https://raw.githubusercontent.com/opencollab/arpack-ng/master/CHANGES"
distfiles="https://github.com/opencollab/arpack-ng/archive/${version}.tar.gz"
-checksum=24f2a2b259992d3c797d80f626878aa8e2ed5009d549dad57854bbcfb95e1ed0
+checksum=f6641deb07fa69165b7815de9008af3ea47eb39b2bb97521fbf74c97aba6e844
# As of 2021-01-03 arpack-ng is only used by octave which includes openblas as
# its BLAS implementation. So if openblas is available for XBPS_TARGET_MACHINE,
@@ -40,7 +40,7 @@ arpack-ng-devel_package() {
depends="${makedepends} ${sourcepkg}>=${version}_${revision}"
pkg_install() {
vmove usr/lib/pkgconfig
- vmove usr/include/arpack-ng
+ vmove usr/include/arpack
vmove "usr/lib/*.so"
}
}
From 977152ced2f3639a55690201c8d8f7513ffa2d68 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Gonzalo=20Tornar=C3=ADa?= <tornaria@cmat.edu.uy>
Date: Mon, 4 Sep 2023 22:56:05 -0300
Subject: [PATCH 2/2] igraph: update to 0.10.7.
---
srcpkgs/igraph/template | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/srcpkgs/igraph/template b/srcpkgs/igraph/template
index 0da33e2ebe649..549f302530c0c 100644
--- a/srcpkgs/igraph/template
+++ b/srcpkgs/igraph/template
@@ -1,6 +1,6 @@
# Template file for 'igraph'
pkgname=igraph
-version=0.10.6
+version=0.10.7
revision=1
build_style=cmake
configure_args="-DIGRAPH_ENABLE_TLS=on -DIGRAPH_ENABLE_LTO=on -DBUILD_SHARED_LIBS=ON
@@ -14,7 +14,7 @@ license="GPL-2.0-or-later"
homepage="https://igraph.org/c/"
changelog="https://github.com/igraph/igraph/releases"
distfiles="https://github.com/igraph/igraph/releases/download/${version}/igraph-${version}.tar.gz"
-checksum=99bf91ee90febeeb9a201f3e0c1d323c09214f0b5f37a4290dc3b63f52839d6d
+checksum=b9e2a46b70896a379d784ea227f076b59750cc7411463b1d4accbf9e38b361ad
build_options="openblas"
^ permalink raw reply [flat|nested] 3+ messages in thread