Citeproc/Order of filters being called

Citeproc/Order of filters being called

['Thomas J.' via pandoc-discuss]

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Hi everyone,

Since pandoc-fignos isn't working anymore (at least, with my Pandoc 
version), I have written a Lua filter that basically does what fignos does, 
namely replacing tags such as @fig:fig1 with anchors/refs to the figures in 
html/latex. Now, if I am trying to use this filter without citeproc, 
everthing works as expected. The moment I use --citeproc, I get the error 
message "fig:fig1 citation not found" and I have no link in my output file. 
I am actually calling the lua filter BEFORE --citeproc in the command 
line... 

pandoc --lua-filter=filter/pandoc-figref.lua --citeproc --number-sections 
--from markdown --template=templates/phimisci-1-5.html --bibliography=
$BIBLIOGRAPHY --csl=csl/apa7-single-spaced.csl yaml/gen-metadata.yaml 
article/$1 article/$2 -o $HTMLFILE

What am I missing? Thanks for the help!

Best wishes,
Thomas

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Re: Citeproc/Order of filters being called

['William Lupton' via pandoc-discuss]

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From the information given, I think that the AST must still contain a
fig:fig1 citation after your filter has run. Are you able to share your
filter?

On Wed, 29 Nov 2023 at 13:28, 'Thomas J.' via pandoc-discuss <
pandoc-discuss-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> wrote:

> Hi everyone,
>
> Since pandoc-fignos isn't working anymore (at least, with my Pandoc
> version), I have written a Lua filter that basically does what fignos does,
> namely replacing tags such as @fig:fig1 with anchors/refs to the figures in
> html/latex. Now, if I am trying to use this filter without citeproc,
> everthing works as expected. The moment I use --citeproc, I get the error
> message "fig:fig1 citation not found" and I have no link in my output file.
> I am actually calling the lua filter BEFORE --citeproc in the command
> line...
>
> pandoc --lua-filter=filter/pandoc-figref.lua --citeproc --number-sections
> --from markdown --template=templates/phimisci-1-5.html --bibliography=
> $BIBLIOGRAPHY --csl=csl/apa7-single-spaced.csl yaml/gen-metadata.yaml
> article/$1 article/$2 -o $HTMLFILE
>
> What am I missing? Thanks for the help!
>
> Best wishes,
> Thomas
>
> --
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> .
>

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Re: Citeproc/Order of filters being called

['Thomas J.' via pandoc-discuss]

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Thanks for the feedback! I simply was not aware of the fact that every 
@<WORD> string is apparently automatically converted into a Cite block in 
the AST, even without using citeproc (?). Anyhow, being aware of this fixed 
the problem. I've attached the filter, if someone is interested. It is 
still very raw and only for HTML (adding latex shouldnt be a huge problem 
though).

Thanks again for the help!

With best wishes,
Thomas

William Lupton schrieb am Mittwoch, 29. November 2023 um 15:49:45 UTC+1:

> From the information given, I think that the AST must still contain a 
> fig:fig1 citation after your filter has run. Are you able to share your 
> filter?
>
> On Wed, 29 Nov 2023 at 13:28, 'Thomas J.' via pandoc-discuss <
> pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> wrote:
>
>> Hi everyone,
>>
>> Since pandoc-fignos isn't working anymore (at least, with my Pandoc 
>> version), I have written a Lua filter that basically does what fignos does, 
>> namely replacing tags such as @fig:fig1 with anchors/refs to the figures in 
>> html/latex. Now, if I am trying to use this filter without citeproc, 
>> everthing works as expected. The moment I use --citeproc, I get the error 
>> message "fig:fig1 citation not found" and I have no link in my output file. 
>> I am actually calling the lua filter BEFORE --citeproc in the command 
>> line... 
>>
>> pandoc --lua-filter=filter/pandoc-figref.lua --citeproc --number-sections 
>> --from markdown --template=templates/phimisci-1-5.html --bibliography=
>> $BIBLIOGRAPHY --csl=csl/apa7-single-spaced.csl yaml/gen-metadata.yaml 
>> article/$1 article/$2 -o $HTMLFILE
>>
>> What am I missing? Thanks for the help!
>>
>> Best wishes,
>> Thomas
>>
>> -- 
>> You received this message because you are subscribed to the Google Groups 
>> "pandoc-discuss" group.
>> To unsubscribe from this group and stop receiving emails from it, send an 
>> email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org
>> To view this discussion on the web visit 
>> https://groups.google.com/d/msgid/pandoc-discuss/15e09292-83a1-4e28-ba84-d0c518be709dn%40googlegroups.com 
>> <https://groups.google.com/d/msgid/pandoc-discuss/15e09292-83a1-4e28-ba84-d0c518be709dn%40googlegroups.com?utm_medium=email&utm_source=footer>
>> .
>>
>

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-- filter to reference images/figures in text
-- inspired by pandoc-fignos (works with fignos @fig:<label> syntax)
-- currently only conversion to PDF & HTML
-- tested with Pandoc 3.1
-- written by Thomas Jurczyk

-- GLOBAL VARIABLES
-- table to store fig-refs found
Figref_Table = {}
-- counter for figure numbering
Counter = 1

-- HELPER FUNCTIONS

--- Function to add a Figure str pandoc.Inline Element to a pandoc.Caption
-- @param caption The pandoc.Plain block from the figure.caption.long element.
-- @return The new figure.caption.long.Plain block now starting with with 'Figure <NUMBER>: '.
function addFigureTagToCaption(plain)
    -- add a "Figure <NUMBER>:" tag at the beginning of a caption
    table.insert(plain.content, 1, pandoc.Str("Figure"))
    table.insert(plain.content, 2, pandoc.Space())
    table.insert(plain.content, 3, pandoc.Str(Counter .. ":"))
    table.insert(plain.content, 4 ,pandoc.Space())
    return plain
end

--- Function to find the index of an element in a table. This function is used in setRefsToFigure().
-- @param element The element searched for in the table.
-- @param table The table in which the element is searched for.
-- @return (str|nil) The index as a STRING. nil if element has not been found.
function findIndex(element, table)
    for index, entry in ipairs(table) do
        if entry == element then
            return tostring(index)
        end
    end
    return nil
end

---Function to replace a string that matches a figure id with HTML/LaTeX links/refs.
-- @param The plain string from Cite.citations[1].id
-- @return (pandoc.RawInline|nil) 
function stringReplacementRef(word)
    if tableContains(Figref_Table, word) then
        local referenceNumber = findIndex(word, Figref_Table)
        if FORMAT:match "html" then
            return pandoc.RawInline('html', '<a href="#'..word..'">'..referenceNumber..'</a>')
        --TODO: add LaTeX reference
        end
    else
        return nil
    end
end

--- Function to check if an element (here: the identifier used in the fig-reference) is in a table (here: the globale table with all found figure identifiers).
-- @param table The table (= global Figref_Table).
-- @param element The element to search for (=the identifier used in the in-text reference).
-- @return (bool) true or false
function tableContains(table, element)
    for _,value in ipairs(table) do
        if value == element then
            return true
        end
    end
    return false
end

-- MAIN FUNCTIONS

--- Checks every pandoc.Figure for identifiers; if one was found, add it to global Figref_Table
-- @param figure The pandoc.Figure element.
-- @return (nil | pandoc.Figure). New pandoc.Figure element if identifier was found, else nil.
function figureParser(figure)
    -- only exchange caption if output format is 'html' -> LaTeX automatically adds figure-tags like "Figure 1:" to captions
    if figure.identifier then
        -- add identifier to global id-collection (used to find in-text refs)
        table.insert(Figref_Table, Counter, figure.identifier)
        -- change figure caption in AST: add "Figure <NO>: " to caption
        if FORMAT:match "html" then 
            figure.caption.long = figure.caption.long:walk {
                Plain=addFigureTagToCaption
            }
        end
        -- increase global Counter
        Counter = Counter + 1
        return figure
    else
        return nil
    end
end

--- Function to replace the in-text figure reference (such as @fig:fig1), which is wrapped in a pandoc.Cite element, with the matching link syntax of the output format (HTML/LaTeX).
-- @param word The pandoc.Cite element.
-- @return (nil|pandoc.RawInline) pandoc.RawInline if reference was found. Else nil.
function setRefsToFigure(cite)
    return stringReplacementRef(cite.citations[1].id)
end

return {
    {Figure=figureParser},
    {Cite=setRefsToFigure}
  }
  

Re: Citeproc/Order of filters being called

['Thomas J.' via pandoc-discuss]

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Just a quick update: Adding references to LaTeX/PDF should now work as 
well. I've also refactored parts of the code/docs and put everything into a 
github repo:

https://github.com/thomjur/pandoc-figref

Thomas J. schrieb am Mittwoch, 29. November 2023 um 19:29:15 UTC+1:

> Thanks for the feedback! I simply was not aware of the fact that every 
> @<WORD> string is apparently automatically converted into a Cite block in 
> the AST, even without using citeproc (?). Anyhow, being aware of this fixed 
> the problem. I've attached the filter, if someone is interested. It is 
> still very raw and only for HTML (adding latex shouldnt be a huge problem 
> though).
>
> Thanks again for the help!
>
> With best wishes,
> Thomas
>
> William Lupton schrieb am Mittwoch, 29. November 2023 um 15:49:45 UTC+1:
>
>> From the information given, I think that the AST must still contain a 
>> fig:fig1 citation after your filter has run. Are you able to share your 
>> filter?
>>
>> On Wed, 29 Nov 2023 at 13:28, 'Thomas J.' via pandoc-discuss <
>> pandoc-...-/JYPxA39Uh5TLH3MbocFFw@public.gmane.org> wrote:
>>
>>> Hi everyone,
>>>
>>> Since pandoc-fignos isn't working anymore (at least, with my Pandoc 
>>> version), I have written a Lua filter that basically does what fignos does, 
>>> namely replacing tags such as @fig:fig1 with anchors/refs to the figures in 
>>> html/latex. Now, if I am trying to use this filter without citeproc, 
>>> everthing works as expected. The moment I use --citeproc, I get the error 
>>> message "fig:fig1 citation not found" and I have no link in my output file. 
>>> I am actually calling the lua filter BEFORE --citeproc in the command 
>>> line... 
>>>
>>> pandoc --lua-filter=filter/pandoc-figref.lua --citeproc 
>>> --number-sections --from markdown --template=templates/phimisci-1-5.html 
>>> --bibliography=$BIBLIOGRAPHY --csl=csl/apa7-single-spaced.csl 
>>> yaml/gen-metadata.yaml article/$1 article/$2 -o $HTMLFILE
>>>
>>> What am I missing? Thanks for the help!
>>>
>>> Best wishes,
>>> Thomas
>>>
>>> -- 
>>> You received this message because you are subscribed to the Google 
>>> Groups "pandoc-discuss" group.
>>> To unsubscribe from this group and stop receiving emails from it, send 
>>> an email to pandoc-discus...-/JYPxA39Uh5TLH3MbocFF+G/Ez6ZCGd0@public.gmane.org
>>> To view this discussion on the web visit 
>>> https://groups.google.com/d/msgid/pandoc-discuss/15e09292-83a1-4e28-ba84-d0c518be709dn%40googlegroups.com 
>>> <https://groups.google.com/d/msgid/pandoc-discuss/15e09292-83a1-4e28-ba84-d0c518be709dn%40googlegroups.com?utm_medium=email&utm_source=footer>
>>> .
>>>
>>

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